pycom13g15410

methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0010744
Physical Location & Seq
Reverse (-)
11228169 .. 11229518
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g15410.1

Sequence Viewer

Length: 423 bp
ATGGCTGCACCTACACCTGCACCGCCAGGTTCAGTTCAGAAAACTGAGGAAGAATGGCGGGCTGTTCTCTCCCCGGAACAGTTCAGGATTCTACGCGAGAAAGGAACTGAGCTAAAATTCACTGGGGAATATGACAAGGTTTTTGAAGAAGGGGTTTACAAATGTGCTGGTTGTGGAACACCGCTTTATAAGTCAACTACCAAGTTTGATTCCGGATGCGGTTGGCCTGCATTCTACGAGGGTCTGCCTGGAGCCATAAACCGATCGCCTGACCCAGATGGGAGGAGAACTGAGATCACATGTGCAGCTTGTGGCGGTCACTTGGGGCATGTTTTTAAAGGGGAAGGGCACAAGGTGCCGACAGATGAACGCCACTGTGTCAACAGCGTTTCCATCAAGCTTGTTCCTGAAACGTCTGCATGA

Protein Analysis

141

Amino Acids

15.2

Weight (kDa)

6.09

Isoelectric Point (pI)

54.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelR PF01641 23 - 135 6.8e-44 SelR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010744)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04810 AT4G04810 AT4G04830 AT4G04830
fragaria_vesca FvH4_4g13910
malus_domestica MD13G1177800.v1.1
prunus_persica Prupe.1G147300_v2.0.a1
pyrus_communis pycom13g15410
rosa_chinensis RchiOBHm_Chr4g0395581 RchiOBHm_Chr4g0419881
rosa_laevigata RLG00000007797
rosa_multiflora Rmu_sc0000720.1_g000015 Rmu_sc0003990.1_g000001
rosa_roxburghii Rroxscaffold_5G00362640
rosa_rugosa Rorug04G0161000
rosa_samantha Rh4AG222100 Rh4BG224300 Rh4CG235400 Rh4DG221100
rosa_wichuraiana Rw4G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 189
AarI CACCTGC 1 cut(s) 25
Acc36I ACCTGC 1 cut(s) 25
AccB1I GGYRCC 1 cut(s) 355
AccII CGCG 1 cut(s) 96
AccIII TCCGGA 1 cut(s) 212
AciI CCGC 5 cut(s) 23, 58, 182, 219, 315
AcsI RAATTY 1 cut(s) 116
AdeI CACNNNGTG 1 cut(s) 355
AflIII ACRYGT 1 cut(s) 299
AgsI TTSAA 1 cut(s) 146
AjnI CCWGG 2 cut(s) 25, 247
AluBI AGCT 3 cut(s) 112, 308, 400
AluI AGCT 3 cut(s) 112, 308, 400
Aor13HI TCCGGA 1 cut(s) 212
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 2 cut(s) 5, 305
ApoI RAATTY 1 cut(s) 116
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AsuC2I CCSGG 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 351
BanI GGYRCC 1 cut(s) 355
BbvI GCAGC 1 cut(s) 317
BccI CCATC 2 cut(s) 272, 401
BciT130I CCWGG 2 cut(s) 27, 249
BcnI CCSGG 1 cut(s) 74
BfuAI ACCTGC 1 cut(s) 25
BisI GCNGC 2 cut(s) 6, 306
BlsI GCNGC 2 cut(s) 7, 307
Bme1390I CCNGG 3 cut(s) 27, 74, 249
BmiI GGNNCC 2 cut(s) 253, 357
BmrFI CCNGG 3 cut(s) 27, 74, 249
BmrI ACTGGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 206
BmuI ACTGGG 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 127
BseAI TCCGGA 1 cut(s) 212
BseBI CCWGG 2 cut(s) 27, 249
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 221
BseMII CTCAG 3 cut(s) 36, 99, 282
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 298
BseSI GKGCMC 1 cut(s) 351
BseXI GCAGC 1 cut(s) 317
BsgI GTGCAG 1 cut(s) 324
Bsh1236I CGCG 1 cut(s) 96
Bsh1285I CGRYCG 1 cut(s) 266
BshFI GGCC 1 cut(s) 226
BshNI GGYRCC 1 cut(s) 355
BsiEI CGRYCG 1 cut(s) 266
BsiSI CCGG 2 cut(s) 74, 213
BsmI GAATGC 1 cut(s) 230
BsnI GGCC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 351
Bsp13I TCCGGA 1 cut(s) 212
Bsp143I GATC 2 cut(s) 263, 294
BspACI CCGC 5 cut(s) 23, 58, 182, 219, 315
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 3 cut(s) 37, 100, 283
BspEI TCCGGA 1 cut(s) 212
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 253, 357
BspMI ACCTGC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 355
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 2 cut(s) 263, 294
Bst2UI CCWGG 2 cut(s) 27, 249
Bst4CI ACNGT 2 cut(s) 81, 377
BstAPI GCANNNNNTGC 1 cut(s) 355
BstC8I GCNNGC 2 cut(s) 60, 228
BstDEI CTNAG 3 cut(s) 45, 108, 291
BstF5I GGATG 1 cut(s) 221
BstFNI CGCG 1 cut(s) 96
BstKTI GATC 2 cut(s) 266, 297
BstMBI GATC 2 cut(s) 263, 294
BstMCI CGRYCG 1 cut(s) 266
BstMWI GCNNNNNNNGC 1 cut(s) 355
BstNI CCWGG 2 cut(s) 27, 249
BstNSI RCATGY 2 cut(s) 303, 332
BstSCI CCNGG 3 cut(s) 25, 72, 247
BstSLI GKGCMC 1 cut(s) 351
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 317
BsuRI GGCC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 221
BtsIMutI CAGTG 2 cut(s) 120, 373
BveI ACCTGC 1 cut(s) 25
Cac8I GCNNGC 2 cut(s) 60, 228
CviAII CATG 3 cut(s) 300, 329, 420
CviJI RGCY 7 cut(s) 5, 62, 112, 226, 254, 308, 400
CviKI_1 RGCY 7 cut(s) 5, 62, 112, 226, 254, 308, 400
DdeI CTNAG 3 cut(s) 45, 108, 291
DpnI GATC 2 cut(s) 265, 296
DpnII GATC 2 cut(s) 263, 294
DraI TTTAAA 1 cut(s) 337
DraIII CACNNNGTG 1 cut(s) 355
EcoRII CCWGG 2 cut(s) 25, 247
FaeI CATG 3 cut(s) 303, 332, 423
FaiI YATR 6 cut(s) 132, 189, 257, 301, 330, 421
FatI CATG 3 cut(s) 299, 328, 419
FauI CCCGC 1 cut(s) 51
Fnu4HI GCNGC 2 cut(s) 6, 306
FokI GGATG 1 cut(s) 228
Fsp4HI GCNGC 2 cut(s) 6, 306
GluI GCNGC 2 cut(s) 6, 306
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 1 cut(s) 226
HapII CCGG 2 cut(s) 74, 213
Hin1II CATG 3 cut(s) 303, 332, 423
HincII GTYRAC 2 cut(s) 195, 382
HindII GTYRAC 2 cut(s) 195, 382
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 2 cut(s) 88, 209
HpaII CCGG 2 cut(s) 74, 213
Hpy166II GTNNAC 3 cut(s) 157, 195, 382
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 3 cut(s) 85, 213, 407
Hpy8I GTNNAC 3 cut(s) 157, 195, 382
HpyAV CCTTC 2 cut(s) 143, 338
HpyCH4III ACNGT 2 cut(s) 81, 377
HpyCH4IV ACGT 1 cut(s) 413
HpyCH4V TGCA 5 cut(s) 8, 20, 230, 305, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 355
HpyF3I CTNAG 3 cut(s) 45, 108, 291
HpySE526I ACGT 1 cut(s) 413
Hsp92II CATG 3 cut(s) 303, 332, 423
Kpn2I TCCGGA 1 cut(s) 212
Kzo9I GATC 2 cut(s) 263, 294
LmnI GCTCC 1 cut(s) 251
Lsp1109I GCAGC 1 cut(s) 317
LweI GCATC 1 cut(s) 206
MaeII ACGT 1 cut(s) 413
MaeIII GTNAC 1 cut(s) 317
MalI GATC 2 cut(s) 265, 296
MboI GATC 2 cut(s) 263, 294
MboII GAAGA 2 cut(s) 62, 158
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 1 cut(s) 116
MnlI CCTC 3 cut(s) 40, 232, 276
MroI TCCGGA 1 cut(s) 212
MseI TTAA 1 cut(s) 336
MspI CCGG 2 cut(s) 74, 213
MspR9I CCNGG 3 cut(s) 27, 74, 249
Mva1269I GAATGC 1 cut(s) 230
MvaI CCWGG 2 cut(s) 27, 249
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 355
NciI CCSGG 1 cut(s) 74
NdeII GATC 2 cut(s) 263, 294
NlaIII CATG 3 cut(s) 303, 332, 423
NlaIV GGNNCC 2 cut(s) 253, 357
NmuCI GTSAC 1 cut(s) 317
NspI RCATGY 2 cut(s) 303, 332
PaqCI CACCTGC 1 cut(s) 25
PciI ACATGT 1 cut(s) 299
PctI GAATGC 1 cut(s) 230
PfeI GAWTC 2 cut(s) 88, 209
PkrI GCNGC 2 cut(s) 7, 307
Ple19I CGATCG 1 cut(s) 266
PscI ACATGT 1 cut(s) 299
PsiI TTATAA 1 cut(s) 189
Psp6I CCWGG 2 cut(s) 25, 247
PspGI CCWGG 2 cut(s) 25, 247
PspN4I GGNNCC 2 cut(s) 253, 357
PvuI CGATCG 1 cut(s) 266
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 6, 306
Sau3AI GATC 2 cut(s) 263, 294
ScrFI CCNGG 3 cut(s) 27, 74, 249
SduI GDGCHC 1 cut(s) 351
SetI ASST 9 cut(s) 13, 19, 31, 114, 141, 310, 357, 402, 416
SfaNI GCATC 1 cut(s) 206
Sse9I AATT 1 cut(s) 116
SsiI CCGC 5 cut(s) 23, 58, 182, 219, 315
StyD4I CCNGG 3 cut(s) 25, 72, 247
TaaI ACNGT 2 cut(s) 81, 377
TaiI ACGT 1 cut(s) 416
TasI AATT 1 cut(s) 116
TfiI GAWTC 2 cut(s) 88, 209
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 2 cut(s) 127, 380
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 2 cut(s) 5, 305
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 1 cut(s) 381
TspRI CASTG 2 cut(s) 127, 380
XapI RAATTY 1 cut(s) 116
XceI RCATGY 2 cut(s) 303, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.