Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0010744

Physical Location & Seq

Genomic Coordinates Forward (+)

47902418 .. 47904718

Gene Structure 2301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG235400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTGCACCAGGTTCAGTTCAGAAGGCCGAGGAAGAGTGGCAGGCTATTCTCTCCCCTGAACAGTTCAGGATTCTACGCCAGAAAGGGACAGAGCCAAAATTCACTGGGGAATATGACAAGGTTTTCGAAGACGGGGTTTATACTTGTGCTGGTTGTGGAACACCACTTTACAAGTCTTCAACCAAGTTTAACTCTGGATGTGGTTGGCCTGCATTCTATGAGGGTTTGCCTGGAGCCATTAATCGTTCTCCGGATCCGGATGGCAGGAGAACGGAGATTACCTGTGCCGCTTGTGGTGGTCACTTGGGACATGTTTTCAAATGGGAGGGGACTAAGGTGCCGACAGATGAACGCCACTGTGTCAACAGCGTTTCGATTAAGCTTGTTCCAGAAAATTCTGCATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009987 GO:0012505 GO:0016491 GO:0016667 GO:0016671 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070191 GO:0070887

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

136

Amino Acids

14.81

Weight (kDa)

5.91

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelR	PF01641	18 - 130	3.7e-44	SelR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0010744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04810 AT4G04810 AT4G04830 AT4G04830
fragaria_vesca	FvH4_4g13910
malus_domestica	MD13G1177800.v1.1
prunus_persica	Prupe.1G147300_v2.0.a1
pyrus_communis	pycom13g15410
rosa_chinensis	RchiOBHm_Chr4g0395581 RchiOBHm_Chr4g0419881
rosa_laevigata	RLG00000007797
rosa_multiflora	Rmu_sc0000720.1_g000015 Rmu_sc0003990.1_g000001
rosa_roxburghii	Rroxscaffold_5G00362640
rosa_rugosa	Rorug04G0161000
rosa_samantha	Rh4AG222100 Rh4BG224300 Rh4CG235400 Rh4DG221100
rosa_wichuraiana	Rw4G019130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	340
AccIII	TCCGGA	2 cut(s)	253, 259
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	2 cut(s)	251, 264
AcsI	RAATTY	2 cut(s)	101, 397
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	183, 322
AjnI	CCWGG	2 cut(s)	10, 232
AluBI	AGCT	1 cut(s)	385
AluI	AGCT	1 cut(s)	385
AlwI	GGATC	2 cut(s)	251, 264
Aor13HI	TCCGGA	2 cut(s)	253, 259
AoxI	GGCC	2 cut(s)	27, 209
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	101, 397
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AseI	ATTAAT	1 cut(s)	243
AsuII	TTCGAA	1 cut(s)	129
BamHI	GGATCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	340
BbsI	GAAGAC	2 cut(s)	138, 171
BccI	CCATC	1 cut(s)	257
BciT130I	CCWGG	2 cut(s)	12, 234
BisI	GCNGC	2 cut(s)	6, 291
BlsI	GCNGC	2 cut(s)	7, 292
Bme1390I	CCNGG	2 cut(s)	12, 234
BmiI	GGNNCC	3 cut(s)	238, 258, 342
BmrFI	CCNGG	2 cut(s)	12, 234
BmrI	ACTGGG	1 cut(s)	117
BmuI	ACTGGG	1 cut(s)	117
BpiI	GAAGAC	2 cut(s)	138, 171
BpmI	CTGGAG	1 cut(s)	255
Bpu14I	TTCGAA	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	30
BsaWI	WCCGGW	2 cut(s)	253, 259
Bse1I	ACTGG	1 cut(s)	112
BseAI	TCCGGA	2 cut(s)	253, 259
BseBI	CCWGG	2 cut(s)	12, 234
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	206, 268
BseNI	ACTGG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	29, 211
BshNI	GGYRCC	1 cut(s)	340
BsiSI	CCGG	2 cut(s)	254, 260
BslFI	GGGAC	3 cut(s)	103, 324, 346
BsmFI	GGGAC	3 cut(s)	103, 324, 346
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	29, 211
Bsp119I	TTCGAA	1 cut(s)	129
Bsp13I	TCCGGA	2 cut(s)	253, 259
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	2 cut(s)	29, 211
BspEI	TCCGGA	2 cut(s)	253, 259
BspLI	GGNNCC	3 cut(s)	238, 258, 342
BspPI	GGATC	2 cut(s)	251, 264
BspT104I	TTCGAA	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	1 cut(s)	256
Bst2UI	CCWGG	2 cut(s)	12, 234
Bst4CI	ACNGT	2 cut(s)	66, 362
Bst6I	CTCTTC	1 cut(s)	30
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	45, 213
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	206, 268
BstKTI	GATC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	256
BstNI	CCWGG	2 cut(s)	12, 234
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	2 cut(s)	10, 232
BstV2I	GAAGAC	2 cut(s)	138, 171
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	29, 211
BtsCI	GGATG	2 cut(s)	206, 268
BtsIMutI	CAGTG	2 cut(s)	105, 358
Cac8I	GCNNGC	2 cut(s)	45, 213
CsiI	ACCWGGT	1 cut(s)	10
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	7 cut(s)	5, 29, 47, 97, 211, 239, 385
CviKI_1	RGCY	7 cut(s)	5, 29, 47, 97, 211, 239, 385
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
EcoRII	CCWGG	2 cut(s)	10, 232
FaeI	CATG	1 cut(s)	317
FaiI	YATR	4 cut(s)	117, 144, 222, 315
FaqI	GGGAC	3 cut(s)	103, 324, 346
FatI	CATG	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	6, 291
FokI	GGATG	2 cut(s)	213, 275
Fsp4HI	GCNGC	2 cut(s)	6, 291
GluI	GCNGC	2 cut(s)	6, 291
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	29, 211
HapII	CCGG	2 cut(s)	254, 260
Hin1II	CATG	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	2 cut(s)	254, 260
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	6 cut(s)	70, 198, 254, 260, 392, 408
Hpy8I	GTNNAC	1 cut(s)	367
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	66, 362
HpyCH4V	TGCA	3 cut(s)	8, 215, 404
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	317
Kpn2I	TCCGGA	2 cut(s)	253, 259
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	236
MabI	ACCWGGT	1 cut(s)	10
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	3 cut(s)	47, 143, 171
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	2 cut(s)	101, 397
MnlI	CCTC	3 cut(s)	25, 217, 322
MroI	TCCGGA	2 cut(s)	253, 259
MseI	TTAA	3 cut(s)	192, 243, 381
MspI	CCGG	2 cut(s)	254, 260
MspR9I	CCNGG	2 cut(s)	12, 234
Mva1269I	GAATGC	1 cut(s)	215
MvaI	CCWGG	2 cut(s)	12, 234
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	3 cut(s)	238, 258, 342
NmeAIII	GCCGAG	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	302
NspI	RCATGY	1 cut(s)	317
NspV	TTCGAA	1 cut(s)	129
PciI	ACATGT	1 cut(s)	313
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	7, 292
PscI	ACATGT	1 cut(s)	313
PshBI	ATTAAT	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	10, 232
PspGI	CCWGG	2 cut(s)	10, 232
PspN4I	GGNNCC	3 cut(s)	238, 258, 342
PsrI	GAACNNNNNNTAC	2 cut(s)	265, 297
PsuI	RGATCY	1 cut(s)	256
SaqAI	TTAA	3 cut(s)	192, 243, 381
SatI	GCNGC	2 cut(s)	6, 291
Sau3AI	GATC	1 cut(s)	256
ScrFI	CCNGG	2 cut(s)	12, 234
SetI	ASST	5 cut(s)	16, 126, 287, 342, 387
SexAI	ACCWGGT	1 cut(s)	10
SfuI	TTCGAA	1 cut(s)	129
Sse9I	AATT	2 cut(s)	101, 397
SsiI	CCGC	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	10, 232
TaaI	ACNGT	2 cut(s)	66, 362
TaqI	TCGA	2 cut(s)	129, 377
TasI	AATT	2 cut(s)	101, 397
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	3 cut(s)	192, 243, 381
Tru9I	TTAA	3 cut(s)	192, 243, 381
TscAI	CASTG	2 cut(s)	112, 365
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	366
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	2 cut(s)	112, 365
VspI	ATTAAT	1 cut(s)	243
XapI	RAATTY	2 cut(s)	101, 397
XceI	RCATGY	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.