Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010744

Physical Location & Seq

Genomic Coordinates Reverse (-)

17436143 .. 17437781

Gene Structure 1639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCTGCTCCAGGTTCAGTTCAGAAATCCGAGGAAGAATGGCAGGCTATTCTCTCCCCTGAACAGTTCAGGATTCTACGCCAGAAAGGGACAGAGCCAAAATTCACTGGGGAATATGACAAGGTTTTCGAAGAAGGGGTTTATACTTGTGCCGGTTGCGGAACACCAATTTACAAGTCTTCAACCAAGTTTAACTCTGGATGTGGTTGGCCTGCATTCTATGAGGGTTTGCCTGGAGCCATAAATCGTTCTCCGGACCCAGATGGCAGGAGAACTGAGATTACCTGTGCAGCTTGTGGTGGTCACTTGGGACATGTTTTCAAATGGGAAGGGACTAAGGTGCCAACAGATGAACGCCACTGTGTCAACAGTGTTTCGATTAAGCTTGTTCCCGAAAATTCTGCATCAAGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009987 GO:0012505 GO:0016491 GO:0016667 GO:0016671 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070191 GO:0070887

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

139

Amino Acids

15.11

Weight (kDa)

6.3

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelR	PF01641	18 - 130	9.1e-44	SelR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04810 AT4G04810 AT4G04830 AT4G04830
fragaria_vesca	FvH4_4g13910
malus_domestica	MD13G1177800.v1.1
prunus_persica	Prupe.1G147300_v2.0.a1
pyrus_communis	pycom13g15410
rosa_chinensis	RchiOBHm_Chr4g0395581 RchiOBHm_Chr4g0419881
rosa_laevigata	RLG00000007797
rosa_multiflora	Rmu_sc0000720.1_g000015 Rmu_sc0003990.1_g000001
rosa_roxburghii	Rroxscaffold_5G00362640
rosa_rugosa	Rorug04G0161000
rosa_samantha	Rh4AG222100 Rh4BG224300 Rh4CG235400 Rh4DG221100
rosa_wichuraiana	Rw4G019130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	340
AccIII	TCCGGA	1 cut(s)	253
AciI	CCGC	1 cut(s)	159
AcsI	RAATTY	3 cut(s)	101, 397, 411
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	183, 322
AjnI	CCWGG	2 cut(s)	10, 232
AluBI	AGCT	2 cut(s)	293, 385
AluI	AGCT	2 cut(s)	293, 385
Aor13HI	TCCGGA	1 cut(s)	253
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	5, 290
ApoI	RAATTY	3 cut(s)	101, 397, 411
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspS9I	GGNCC	1 cut(s)	256
AsuII	TTCGAA	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	1 cut(s)	257
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	2 cut(s)	12, 234
BisI	GCNGC	2 cut(s)	6, 291
BlsI	GCNGC	2 cut(s)	7, 292
Bme1390I	CCNGG	2 cut(s)	12, 234
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	3 cut(s)	238, 258, 342
BmrFI	CCNGG	2 cut(s)	12, 234
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	413
BmuI	ACTGGG	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	255
Bpu14I	TTCGAA	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	253
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	112
BseAI	TCCGGA	1 cut(s)	253
BseBI	CCWGG	2 cut(s)	12, 234
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	302
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	211
BshNI	GGYRCC	1 cut(s)	340
BsiSI	CCGG	2 cut(s)	153, 254
BslFI	GGGAC	3 cut(s)	103, 324, 346
BsmFI	GGGAC	3 cut(s)	103, 324, 346
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	211
Bsp119I	TTCGAA	1 cut(s)	129
Bsp13I	TCCGGA	1 cut(s)	253
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	268
BspEI	TCCGGA	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	238, 258, 342
BspT104I	TTCGAA	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	340
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	30
Bst2UI	CCWGG	2 cut(s)	12, 234
Bst4CI	ACNGT	3 cut(s)	66, 362, 371
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	45, 213
BstDEI	CTNAG	2 cut(s)	276, 336
BstF5I	GGATG	1 cut(s)	206
BstNI	CCWGG	2 cut(s)	12, 234
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	2 cut(s)	10, 232
BstV1I	GCAGC	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	206
BtsIMutI	CAGTG	3 cut(s)	105, 358, 376
Cac8I	GCNNGC	2 cut(s)	45, 213
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	256
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	7 cut(s)	5, 47, 97, 211, 239, 293, 385
CviKI_1	RGCY	7 cut(s)	5, 47, 97, 211, 239, 293, 385
DdeI	CTNAG	2 cut(s)	276, 336
Eco47I	GGWCC	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	10, 232
FaeI	CATG	1 cut(s)	317
FaiI	YATR	5 cut(s)	117, 144, 222, 242, 315
FaqI	GGGAC	3 cut(s)	103, 324, 346
FatI	CATG	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	6, 291
FokI	GGATG	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	6, 291
GluI	GCNGC	2 cut(s)	6, 291
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	2 cut(s)	153, 254
Hin1II	CATG	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	2 cut(s)	153, 254
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	24, 31
Hpy188III	TCNNGA	5 cut(s)	70, 198, 254, 392, 408
Hpy8I	GTNNAC	1 cut(s)	367
HpyAV	CCTTC	2 cut(s)	128, 323
HpyCH4III	ACNGT	3 cut(s)	66, 362, 371
HpyCH4V	TGCA	3 cut(s)	215, 290, 404
HpyF3I	CTNAG	2 cut(s)	276, 336
Hsp92II	CATG	1 cut(s)	317
Kpn2I	TCCGGA	1 cut(s)	253
LmnI	GCTCC	2 cut(s)	13, 236
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	1 cut(s)	413
MaeIII	GTNAC	1 cut(s)	302
MboII	GAAGA	3 cut(s)	47, 143, 171
MluCI	AATT	4 cut(s)	101, 168, 397, 411
MnlI	CCTC	2 cut(s)	25, 217
MroI	TCCGGA	1 cut(s)	253
MseI	TTAA	3 cut(s)	192, 381, 415
MspI	CCGG	2 cut(s)	153, 254
MspR9I	CCNGG	2 cut(s)	12, 234
Mva1269I	GAATGC	1 cut(s)	215
MvaI	CCWGG	2 cut(s)	12, 234
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	3 cut(s)	238, 258, 342
NmuCI	GTSAC	1 cut(s)	302
NspI	RCATGY	1 cut(s)	317
NspV	TTCGAA	1 cut(s)	129
PciI	ACATGT	1 cut(s)	313
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	7, 292
PscI	ACATGT	1 cut(s)	313
Psp6I	CCWGG	2 cut(s)	10, 232
PspGI	CCWGG	2 cut(s)	10, 232
PspN4I	GGNNCC	3 cut(s)	238, 258, 342
PspPI	GGNCC	1 cut(s)	256
PsrI	GAACNNNNNNTAC	2 cut(s)	265, 297
SaqAI	TTAA	3 cut(s)	192, 381, 415
SatI	GCNGC	2 cut(s)	6, 291
Sau96I	GGNCC	1 cut(s)	256
ScrFI	CCNGG	2 cut(s)	12, 234
SetI	ASST	6 cut(s)	16, 126, 287, 295, 342, 387
SfaNI	GCATC	1 cut(s)	413
SfuI	TTCGAA	1 cut(s)	129
SinI	GGWCC	1 cut(s)	256
Sse9I	AATT	4 cut(s)	101, 168, 397, 411
SsiI	CCGC	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	10, 232
TaaI	ACNGT	3 cut(s)	66, 362, 371
TaqI	TCGA	2 cut(s)	129, 377
TasI	AATT	4 cut(s)	101, 168, 397, 411
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	3 cut(s)	192, 381, 415
Tru9I	TTAA	3 cut(s)	192, 381, 415
TscAI	CASTG	3 cut(s)	112, 365, 376
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	2 cut(s)	5, 290
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	366
TspRI	CASTG	3 cut(s)	112, 365, 376
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	3 cut(s)	101, 397, 411
XceI	RCATGY	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.