AT4G04830

methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010744
Physical Location & Seq
Forward (+)
2445775 .. 2447086
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G04830.1

Sequence Viewer

Length: 420 bp
ATGGCGGCTTCTCCGTTGGTGGTTCAGAAAACAGAGGAGGAGTGGCGTGCGGTTCTTTCTCCGGAGCAGTTTCGTATTCTTCGTCAAAAAGGCACTGAAAAGCCAGGAACTGGAGAATATGACAAGTTTTTCGAGGAAGGAATCTTCGATTGCGTAGGATGCAAGACTCCTCTTTATAAATCAACCACGAAGTTCGATTCCGGATGTGGCTGGCCAGCTTTCTTTGAAGGACTCCCTGGTGCCATAAACCGAACCCCTGATCCAGATGGGAGAAGAACTGAGATCACTTGTGCTGCGTGCGATGGACATTTAGGCCATGTTTTCAAAGGAGAAGGTTACGGTAATCCAACCGATGAACGTCATTGCGTTAACAGTGTTTCGATCAGTTTTAACCCGGCAAAATCTTCCTCTATAATCTGA

Protein Analysis

139

Amino Acids

15.25

Weight (kDa)

5.62

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelR PF01641 19 - 132 1.7e-44 SelR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010744)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04810 AT4G04810 AT4G04830 AT4G04830
fragaria_vesca FvH4_4g13910
malus_domestica MD13G1177800.v1.1
prunus_persica Prupe.1G147300_v2.0.a1
pyrus_communis pycom13g15410
rosa_chinensis RchiOBHm_Chr4g0395581 RchiOBHm_Chr4g0419881
rosa_laevigata RLG00000007797
rosa_multiflora Rmu_sc0000720.1_g000015 Rmu_sc0003990.1_g000001
rosa_roxburghii Rroxscaffold_5G00362640
rosa_rugosa Rorug04G0161000
rosa_samantha Rh4AG222100 Rh4BG224300 Rh4CG235400 Rh4DG221100
rosa_wichuraiana Rw4G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AccB1I GGYRCC 1 cut(s) 239
AccB7I CCANNNNNTGG 1 cut(s) 110
AccIII TCCGGA 2 cut(s) 61, 200
AciI CCGC 2 cut(s) 5, 50
AclWI GGATC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 2 cut(s) 227, 325
AjnI CCWGG 2 cut(s) 103, 235
AloI GAACNNNNNNTCC 2 cut(s) 244, 276
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
AlwI GGATC 1 cut(s) 254
AlwNI CAGNNNCTG 1 cut(s) 110
Aor13HI TCCGGA 2 cut(s) 61, 200
AoxI GGCC 2 cut(s) 212, 313
ApeKI GCWGC 1 cut(s) 293
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
AsuC2I CCSGG 1 cut(s) 395
BalI TGGCCA 1 cut(s) 214
BanI GGYRCC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 280
BccI CCATC 2 cut(s) 260, 296
BciT130I CCWGG 2 cut(s) 105, 237
BcnI CCSGG 1 cut(s) 395
BisI GCNGC 2 cut(s) 6, 294
BlsI GCNGC 2 cut(s) 7, 295
Bme1390I CCNGG 3 cut(s) 105, 237, 395
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 3 cut(s) 105, 237, 395
BmsI GCATC 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 132
BpuMI CCSGG 1 cut(s) 395
BsaJI CCNNGG 1 cut(s) 235
BsaWI WCCGGW 2 cut(s) 61, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 361
BseAI TCCGGA 2 cut(s) 61, 200
BseBI CCWGG 2 cut(s) 105, 237
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 2 cut(s) 164, 209
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 3 cut(s) 50, 53, 159
BseXI GCAGC 1 cut(s) 280
BshFI GGCC 2 cut(s) 214, 315
BshNI GGYRCC 1 cut(s) 239
BsiSI CCGG 3 cut(s) 62, 201, 395
BslI CCNNNNNNNGG 1 cut(s) 110
BsnI GGCC 2 cut(s) 214, 315
Bsp13I TCCGGA 2 cut(s) 61, 200
Bsp143I GATC 3 cut(s) 259, 282, 381
BspACI CCGC 2 cut(s) 5, 50
BspANI GGCC 2 cut(s) 214, 315
BspCNI CTCAG 1 cut(s) 271
BspEI TCCGGA 2 cut(s) 61, 200
BspLI GGNNCC 1 cut(s) 241
BspPI GGATC 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 361
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 3 cut(s) 259, 282, 381
Bst2UI CCWGG 2 cut(s) 105, 237
Bst4CI ACNGT 2 cut(s) 341, 374
BstC8I GCNNGC 4 cut(s) 48, 212, 216, 298
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 2 cut(s) 164, 209
BstKTI GATC 3 cut(s) 262, 285, 384
BstMBI GATC 3 cut(s) 259, 282, 381
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 2 cut(s) 105, 237
BstSCI CCNGG 3 cut(s) 103, 235, 393
BstV1I GCAGC 1 cut(s) 280
BsuRI GGCC 2 cut(s) 214, 315
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 2 cut(s) 164, 209
BtsIMutI CAGTG 2 cut(s) 93, 379
Cac8I GCNNGC 4 cut(s) 48, 212, 216, 298
CaiI CAGNNNCTG 1 cut(s) 110
CviAII CATG 1 cut(s) 317
CviJI RGCY 6 cut(s) 8, 103, 210, 214, 218, 315
CviKI_1 RGCY 6 cut(s) 8, 103, 210, 214, 218, 315
DdeI CTNAG 1 cut(s) 279
DpnI GATC 3 cut(s) 261, 284, 383
DpnII GATC 3 cut(s) 259, 282, 381
EaeI YGGCCR 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 103, 235
FaeI CATG 1 cut(s) 320
FaiI YATR 5 cut(s) 120, 177, 245, 318, 413
FatI CATG 1 cut(s) 316
Fnu4HI GCNGC 2 cut(s) 6, 294
FokI GGATG 2 cut(s) 171, 216
Fsp4HI GCNGC 2 cut(s) 6, 294
GluI GCNGC 2 cut(s) 6, 294
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 2 cut(s) 214, 315
HapII CCGG 3 cut(s) 62, 201, 395
Hin1II CATG 1 cut(s) 320
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 4 cut(s) 141, 166, 197, 231
HpaI GTTAAC 1 cut(s) 370
HpaII CCGG 3 cut(s) 62, 201, 395
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 2 cut(s) 27, 419
Hpy188III TCNNGA 3 cut(s) 62, 201, 263
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 3 cut(s) 131, 221, 326
HpyCH4III ACNGT 2 cut(s) 341, 374
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 358
Hsp92II CATG 1 cut(s) 320
Kpn2I TCCGGA 2 cut(s) 61, 200
KspAI GTTAAC 1 cut(s) 370
Kzo9I GATC 3 cut(s) 259, 282, 381
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 1 cut(s) 149
MaeII ACGT 1 cut(s) 358
MaeIII GTNAC 1 cut(s) 335
MalI GATC 3 cut(s) 261, 284, 383
MboI GATC 3 cut(s) 259, 282, 381
MboII GAAGA 4 cut(s) 71, 136, 285, 396
MlsI TGGCCA 1 cut(s) 214
MluNI TGGCCA 1 cut(s) 214
MlyI GAGTC 2 cut(s) 160, 225
MmeI TCCRAC 1 cut(s) 371
MnlI CCTC 5 cut(s) 28, 31, 127, 180, 418
Mox20I TGGCCA 1 cut(s) 214
MroI TCCGGA 2 cut(s) 61, 200
MscI TGGCCA 1 cut(s) 214
MseI TTAA 2 cut(s) 369, 390
Msp20I TGGCCA 1 cut(s) 214
MspI CCGG 3 cut(s) 62, 201, 395
MspR9I CCNGG 3 cut(s) 105, 237, 395
MvaI CCWGG 2 cut(s) 105, 237
MwoI GCNNNNNNNGC 1 cut(s) 159
NciI CCSGG 1 cut(s) 395
NdeII GATC 3 cut(s) 259, 282, 381
NlaIII CATG 1 cut(s) 320
NlaIV GGNNCC 1 cut(s) 241
PcsI WCGNNNNNNNCGW 1 cut(s) 79
PfeI GAWTC 2 cut(s) 141, 197
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 2 cut(s) 7, 295
PleI GAGTC 2 cut(s) 160, 225
PpsI GAGTC 2 cut(s) 160, 225
PsiI TTATAA 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 103, 235
PspGI CCWGG 2 cut(s) 103, 235
PspN4I GGNNCC 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 110
SaqAI TTAA 2 cut(s) 369, 390
SatI GCNGC 2 cut(s) 6, 294
Sau3AI GATC 3 cut(s) 259, 282, 381
SchI GAGTC 2 cut(s) 160, 225
ScrFI CCNGG 3 cut(s) 105, 237, 395
SetI ASST 3 cut(s) 220, 337, 361
SfaNI GCATC 1 cut(s) 149
SsiI CCGC 2 cut(s) 5, 50
StyD4I CCNGG 3 cut(s) 103, 235, 393
TaaI ACNGT 2 cut(s) 341, 374
TaiI ACGT 1 cut(s) 361
TaqI TCGA 4 cut(s) 132, 147, 195, 380
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 141, 197
Tru1I TTAA 2 cut(s) 369, 390
Tru9I TTAA 2 cut(s) 369, 390
TscAI CASTG 2 cut(s) 100, 379
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 369
TspRI CASTG 2 cut(s) 100, 379
Van91I CCANNNNNTGG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.