Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010744

Physical Location & Seq

Genomic Coordinates Reverse (-)

11566256 .. 11568204

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G147300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTGCACCAGGGTCAGTTCAGAAATCCGAGGAAGAATGGCGCGCTGTTCTCTCCCCTGAACAGTTTAGGATTCTACGCGAGAAGGGGACAGAGCCAAAATTCACTGGGGAATATGACAAGGTTTTTGAAGAAGGGGTTTACAATTGTTCTGGTTGTGGAACACCACTCTATAAGTCAACTACCAAGTTCGACTCCGGATGCGGTTGGCCTGCATTCTATGAGGGTCTGCCTGGAGCCATAAACCGCTCTCCTGACCCTGATGGGAGGAGAACTGAGATCACATGTGCAGCTTGTGGCGGTCACTTGGGCCATGTTTTTAAAGGGGAGGGGCACAAGGTGCCGACCGATGAACGCCATTGTGTCAACAGCGTTTCGGTCAAGCTTGTTCCAGGGAAGTCTACACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009987 GO:0012505 GO:0016491 GO:0016667 GO:0016671 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070191 GO:0070887

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

137

Amino Acids

14.79

Weight (kDa)

6.42

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04810 AT4G04810 AT4G04830 AT4G04830
fragaria_vesca	FvH4_4g13910
malus_domestica	MD13G1177800.v1.1
prunus_persica	Prupe.1G147300_v2.0.a1
pyrus_communis	pycom13g15410
rosa_chinensis	RchiOBHm_Chr4g0395581 RchiOBHm_Chr4g0419881
rosa_laevigata	RLG00000007797
rosa_multiflora	Rmu_sc0000720.1_g000015 Rmu_sc0003990.1_g000001
rosa_roxburghii	Rroxscaffold_5G00362640
rosa_rugosa	Rorug04G0161000
rosa_samantha	Rh4AG222100 Rh4BG224300 Rh4CG235400 Rh4DG221100
rosa_wichuraiana	Rw4G019130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	340
AccBSI	CCGCTC	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	401
AccII	CGCG	2 cut(s)	45, 81
AccIII	TCCGGA	1 cut(s)	197
AciI	CCGC	3 cut(s)	204, 247, 300
AcsI	RAATTY	1 cut(s)	101
AdeI	CACNNNGTG	1 cut(s)	340
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	3 cut(s)	10, 232, 391
AluBI	AGCT	2 cut(s)	293, 385
AluI	AGCT	2 cut(s)	293, 385
Aor13HI	TCCGGA	1 cut(s)	197
AoxI	GGCC	2 cut(s)	209, 310
ApeKI	GCWGC	2 cut(s)	5, 290
ApoI	RAATTY	1 cut(s)	101
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspLEI	GCGC	2 cut(s)	45, 47
AspS9I	GGNCC	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	336
BanI	GGYRCC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	1 cut(s)	257
BciT130I	CCWGG	3 cut(s)	12, 234, 393
BisI	GCNGC	2 cut(s)	6, 291
BlsI	GCNGC	2 cut(s)	7, 292
Bme1390I	CCNGG	3 cut(s)	12, 234, 393
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	2 cut(s)	238, 342
BmrFI	CCNGG	3 cut(s)	12, 234, 393
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	191
BmuI	ACTGGG	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	11, 30, 392
BsaWI	WCCGGW	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	112
BseAI	TCCGGA	1 cut(s)	197
BseBI	CCWGG	3 cut(s)	12, 234, 393
BseDI	CCNNGG	3 cut(s)	11, 30, 392
BseGI	GGATG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	112
BsePI	GCGCGC	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	283
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	302
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	2 cut(s)	45, 81
Bsh1285I	CGRYCG	1 cut(s)	348
BshFI	GGCC	2 cut(s)	211, 312
BshNI	GGYRCC	1 cut(s)	340
BsiEI	CGRYCG	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	211, 312
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp13I	TCCGGA	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	279
BspACI	CCGC	3 cut(s)	204, 247, 300
BspANI	GGCC	2 cut(s)	211, 312
BspCNI	CTCAG	1 cut(s)	268
BspEI	TCCGGA	1 cut(s)	197
BspFNI	CGCG	2 cut(s)	45, 81
BspLI	GGNNCC	2 cut(s)	238, 342
BspT107I	GGYRCC	1 cut(s)	340
BsrBI	CCGCTC	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	3 cut(s)	11, 30, 392
BssHII	GCGCGC	1 cut(s)	43
BssMI	GATC	1 cut(s)	279
Bst2UI	CCWGG	3 cut(s)	12, 234, 393
Bst4CI	ACNGT	2 cut(s)	66, 408
BstAPI	GCANNNNNTGC	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	45, 213
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	206
BstFNI	CGCG	2 cut(s)	45, 81
BstHHI	GCGC	2 cut(s)	45, 47
BstKTI	GATC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	279
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	3 cut(s)	12, 234, 393
BstNSI	RCATGY	1 cut(s)	288
BstSCI	CCNGG	3 cut(s)	10, 232, 391
BstSLI	GKGCMC	1 cut(s)	336
BstUI	CGCG	2 cut(s)	45, 81
BstV1I	GCAGC	1 cut(s)	302
BsuRI	GGCC	2 cut(s)	211, 312
BtsCI	GGATG	1 cut(s)	206
BtsIMutI	CAGTG	2 cut(s)	105, 404
Cac8I	GCNNGC	2 cut(s)	45, 213
CfoI	GCGC	2 cut(s)	45, 47
Cfr13I	GGNCC	1 cut(s)	310
CviAII	CATG	2 cut(s)	285, 314
CviJI	RGCY	7 cut(s)	5, 97, 211, 239, 293, 312, 385
CviKI_1	RGCY	7 cut(s)	5, 97, 211, 239, 293, 312, 385
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
DraI	TTTAAA	1 cut(s)	322
DraIII	CACNNNGTG	1 cut(s)	340
EcoRII	CCWGG	3 cut(s)	10, 232, 391
FaeI	CATG	2 cut(s)	288, 317
FaiI	YATR	6 cut(s)	117, 174, 222, 242, 286, 315
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	2 cut(s)	284, 313
FblI	GTMKAC	1 cut(s)	401
Fnu4HI	GCNGC	2 cut(s)	6, 291
FokI	GGATG	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	6, 291
GlaI	GCGC	2 cut(s)	44, 46
GluI	GCNGC	2 cut(s)	6, 291
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	211, 312
HapII	CCGG	1 cut(s)	198
HhaI	GCGC	2 cut(s)	45, 47
Hin1II	CATG	2 cut(s)	288, 317
Hin6I	GCGC	2 cut(s)	43, 45
HinP1I	GCGC	2 cut(s)	43, 45
HincII	GTYRAC	2 cut(s)	180, 367
HindII	GTYRAC	2 cut(s)	180, 367
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	2 cut(s)	73, 194
HpaII	CCGG	1 cut(s)	198
Hpy166II	GTNNAC	4 cut(s)	142, 180, 367, 402
Hpy188I	TCNGA	2 cut(s)	24, 31
Hpy188III	TCNNGA	2 cut(s)	198, 254
Hpy8I	GTNNAC	4 cut(s)	142, 180, 367, 402
HpyAV	CCTTC	2 cut(s)	79, 128
HpyCH4III	ACNGT	2 cut(s)	66, 408
HpyCH4V	TGCA	3 cut(s)	8, 215, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	288, 317
HspAI	GCGC	2 cut(s)	43, 45
Kpn2I	TCCGGA	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	1 cut(s)	281
MbiI	CCGCTC	1 cut(s)	249
MboI	GATC	1 cut(s)	279
MboII	GAAGA	2 cut(s)	47, 143
MfeI	CAATTG	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	2 cut(s)	101, 145
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	4 cut(s)	25, 217, 261, 322
MroI	TCCGGA	1 cut(s)	197
MseI	TTAA	1 cut(s)	321
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	3 cut(s)	12, 234, 393
MunI	CAATTG	1 cut(s)	145
Mva1269I	GAATGC	1 cut(s)	215
MvaI	CCWGG	3 cut(s)	12, 234, 393
MvnI	CGCG	2 cut(s)	45, 81
MwoI	GCNNNNNNNGC	1 cut(s)	340
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	2 cut(s)	288, 317
NlaIV	GGNNCC	2 cut(s)	238, 342
NmuCI	GTSAC	1 cut(s)	302
NspI	RCATGY	1 cut(s)	288
PauI	GCGCGC	1 cut(s)	43
PciI	ACATGT	1 cut(s)	284
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	7, 292
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PscI	ACATGT	1 cut(s)	284
Psp6I	CCWGG	3 cut(s)	10, 232, 391
PspGI	CCWGG	3 cut(s)	10, 232, 391
PspN4I	GGNNCC	2 cut(s)	238, 342
PspPI	GGNCC	1 cut(s)	310
PteI	GCGCGC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	2 cut(s)	6, 291
Sau3AI	GATC	1 cut(s)	279
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	3 cut(s)	12, 234, 393
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	4 cut(s)	126, 295, 342, 387
SfaNI	GCATC	1 cut(s)	191
Sse9I	AATT	2 cut(s)	101, 145
SsiI	CCGC	3 cut(s)	204, 247, 300
StyD4I	CCNGG	3 cut(s)	10, 232, 391
TaaI	ACNGT	2 cut(s)	66, 408
TaqI	TCGA	1 cut(s)	192
TaqII	GACCGA	2 cut(s)	362, 367
TasI	AATT	2 cut(s)	101, 145
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	2 cut(s)	112, 411
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	2 cut(s)	5, 290
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	366
TspRI	CASTG	2 cut(s)	112, 411
XapI	RAATTY	1 cut(s)	101
XceI	RCATGY	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.