Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003990.1

Orthogroup ID

OG0010744

Physical Location & Seq

Genomic Coordinates Forward (+)

3137 .. 3556

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003990.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgcacaggccaaaattcactggggaatatgacaaggttttcgaagaaggggtttatacttgtgctggttgtggaacaccactttacaagtcttcaaccaagtttaactctggatgtggttggcctgcattctatgagggtttgcctggagcaattaatcgttctccggatccggatggcaggagaactgagattacctgtgcagcttgtggtggtcacttgggacatgttttcaaatgggaggggactaaggtgccaacagatgaacgccactgtgtcaacagcgtttcgattaagctcgttccagaaaattctgcgtcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009987 GO:0012505 GO:0016491 GO:0016667 GO:0016671 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070191 GO:0070887

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

107

Amino Acids

11.64

Weight (kDa)

6.88

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04810 AT4G04810 AT4G04830 AT4G04830
fragaria_vesca	FvH4_4g13910
malus_domestica	MD13G1177800.v1.1
prunus_persica	Prupe.1G147300_v2.0.a1
pyrus_communis	pycom13g15410
rosa_chinensis	RchiOBHm_Chr4g0395581 RchiOBHm_Chr4g0419881
rosa_laevigata	RLG00000007797
rosa_multiflora	Rmu_sc0000720.1_g000015 Rmu_sc0003990.1_g000001
rosa_roxburghii	Rroxscaffold_5G00362640
rosa_rugosa	Rorug04G0161000
rosa_samantha	Rh4AG222100 Rh4BG224300 Rh4CG235400 Rh4DG221100
rosa_wichuraiana	Rw4G019130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	253
AccIII	TCCGGA	2 cut(s)	166, 172
AclWI	GGATC	2 cut(s)	164, 177
AcsI	RAATTY	2 cut(s)	14, 310
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	2 cut(s)	96, 235
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	2 cut(s)	206, 298
AluI	AGCT	2 cut(s)	206, 298
AlwI	GGATC	2 cut(s)	164, 177
Aor13HI	TCCGGA	2 cut(s)	166, 172
AoxI	GGCC	2 cut(s)	8, 122
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	2 cut(s)	14, 310
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AseI	ATTAAT	1 cut(s)	156
AsuII	TTCGAA	1 cut(s)	42
BamHI	GGATCC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	147
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	171, 255
BmrFI	CCNGG	1 cut(s)	147
BmrI	ACTGGG	1 cut(s)	30
BmuI	ACTGGG	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	168
Bpu14I	TTCGAA	1 cut(s)	42
BsaWI	WCCGGW	2 cut(s)	166, 172
Bse1I	ACTGG	1 cut(s)	25
BseAI	TCCGGA	2 cut(s)	166, 172
BseBI	CCWGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	119, 181
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	215
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	10, 124
BshNI	GGYRCC	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	167, 173
BslFI	GGGAC	2 cut(s)	237, 259
BsmFI	GGGAC	2 cut(s)	237, 259
BsmI	GAATGC	1 cut(s)	128
BsnI	GGCC	2 cut(s)	10, 124
Bsp119I	TTCGAA	1 cut(s)	42
Bsp13I	TCCGGA	2 cut(s)	166, 172
Bsp143I	GATC	1 cut(s)	169
BspANI	GGCC	2 cut(s)	10, 124
BspCNI	CTCAG	1 cut(s)	181
BspEI	TCCGGA	2 cut(s)	166, 172
BspHI	TCATGA	1 cut(s)	320
BspLI	GGNNCC	2 cut(s)	171, 255
BspPI	GGATC	2 cut(s)	164, 177
BspT104I	TTCGAA	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	25
BssMI	GATC	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	275
BstBI	TTCGAA	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	189, 249
BstF5I	GGATG	2 cut(s)	119, 181
BstKTI	GATC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	169
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	10, 124
BtsCI	GGATG	2 cut(s)	119, 181
BtsIMutI	CAGTG	2 cut(s)	18, 271
Cac8I	GCNNGC	1 cut(s)	126
CciI	TCATGA	1 cut(s)	320
CseI	GACGC	1 cut(s)	306
CviAII	CATG	2 cut(s)	227, 321
CviJI	RGCY	4 cut(s)	10, 124, 206, 298
CviKI_1	RGCY	4 cut(s)	10, 124, 206, 298
DdeI	CTNAG	2 cut(s)	189, 249
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	145
FaeI	CATG	2 cut(s)	230, 324
FaiI	YATR	5 cut(s)	30, 57, 135, 228, 322
FaqI	GGGAC	2 cut(s)	237, 259
FatI	CATG	2 cut(s)	226, 320
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	2 cut(s)	126, 188
Fsp4HI	GCNGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	10, 124
HapII	CCGG	2 cut(s)	167, 173
HgaI	GACGC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	230, 324
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HpaII	CCGG	2 cut(s)	167, 173
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188III	TCNNGA	5 cut(s)	111, 167, 173, 305, 321
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	1 cut(s)	41
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4V	TGCA	3 cut(s)	4, 128, 203
HpyF3I	CTNAG	2 cut(s)	189, 249
Hsp92II	CATG	2 cut(s)	230, 324
Kpn2I	TCCGGA	2 cut(s)	166, 172
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	1 cut(s)	215
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	2 cut(s)	56, 84
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	3 cut(s)	14, 153, 310
MnlI	CCTC	2 cut(s)	130, 235
MroI	TCCGGA	2 cut(s)	166, 172
MseI	TTAA	3 cut(s)	105, 156, 294
MspI	CCGG	2 cut(s)	167, 173
MspR9I	CCNGG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	2 cut(s)	230, 324
NlaIV	GGNNCC	2 cut(s)	171, 255
NmuCI	GTSAC	1 cut(s)	215
NspI	RCATGY	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	42
PagI	TCATGA	1 cut(s)	320
PciI	ACATGT	1 cut(s)	226
PctI	GAATGC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	205
PscI	ACATGT	1 cut(s)	226
PshBI	ATTAAT	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	171, 255
PsrI	GAACNNNNNNTAC	2 cut(s)	178, 210
PsuI	RGATCY	1 cut(s)	169
SaqAI	TTAA	3 cut(s)	105, 156, 294
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	5 cut(s)	39, 200, 208, 255, 300
SfuI	TTCGAA	1 cut(s)	42
Sse9I	AATT	3 cut(s)	14, 153, 310
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	42, 290
TasI	AATT	3 cut(s)	14, 153, 310
Tru1I	TTAA	3 cut(s)	105, 156, 294
Tru9I	TTAA	3 cut(s)	105, 156, 294
TscAI	CASTG	2 cut(s)	25, 278
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	2 cut(s)	25, 278
VspI	ATTAAT	1 cut(s)	156
XapI	RAATTY	2 cut(s)	14, 310
XceI	RCATGY	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.