RLG00000007797

methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010744
Physical Location & Seq
Reverse (-)
21220972 .. 21222267
1296 bp
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UTR
Exon/CDS
Intron
RLM00000007797

Sequence Viewer

Length: 567 bp
ATGCGAAAAGCCCCATCTAGTCGATTTCGCGTCCATGTTCATTTTCCCGGTATCTATATAAACCTCTCCCAATTGAGGAAACACCCATCTCCATCTCCATCGGTGATCGTTTGTGTGTTGAGTGTGAGGGACTCTGCTGTAGCTAGGACAGTTGTGATGGCTGCACCAGGTTCAGTTCAGAAGACCGAGGAAGAATGGCAGGCTATTCTCTCCCCTGAACAGTTCAGGATTCTACGCCAGAAAGGGACAGAGCCAAAATTCACTGGGGAATATGACAAGGTTTTTGAAGAAGGGGTTTATACTTGTGCTGGTTGTGGAACACCACTTTACAAGTCTTCAACCAAGTTTAACTCTGGATGTGGTTGGCCTGCATTCTATGAGGGTTTGCCTGGAGCCATTAATCGTTCTCCGGATCCGGATGGCAGGAGAACTGAGATTACCTGTGCAGCTTGTGGTGGTCACTTGGGACATGTTTTCAAATGGGAGGGGACTAAGGTGCCGACAGATGAACGCCACTGTGTCAACAGCGTTTCGATTAAGCTTGTTCCAGAAAATTCTGCATCATGA

Protein Analysis

189

Amino Acids

20.64

Weight (kDa)

8.86

Isoelectric Point (pI)

55.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelR PF01641 70 - 182 7.2e-44 SelR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010744)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04810 AT4G04810 AT4G04830 AT4G04830
fragaria_vesca FvH4_4g13910
malus_domestica MD13G1177800.v1.1
prunus_persica Prupe.1G147300_v2.0.a1
pyrus_communis pycom13g15410
rosa_chinensis RchiOBHm_Chr4g0395581 RchiOBHm_Chr4g0419881
rosa_laevigata RLG00000007797
rosa_multiflora Rmu_sc0000720.1_g000015 Rmu_sc0003990.1_g000001
rosa_roxburghii Rroxscaffold_5G00362640
rosa_rugosa Rorug04G0161000
rosa_samantha Rh4AG222100 Rh4BG224300 Rh4CG235400 Rh4DG221100
rosa_wichuraiana Rw4G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 496
AccII CGCG 1 cut(s) 30
AccIII TCCGGA 2 cut(s) 409, 415
AclWI GGATC 2 cut(s) 407, 420
AcsI RAATTY 2 cut(s) 257, 553
AfiI CCNNNNNNNGG 1 cut(s) 75
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 3 cut(s) 287, 339, 478
AjnI CCWGG 2 cut(s) 166, 388
AluBI AGCT 3 cut(s) 143, 449, 541
AluI AGCT 3 cut(s) 143, 449, 541
AlwI GGATC 2 cut(s) 407, 420
Aor13HI TCCGGA 2 cut(s) 409, 415
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 2 cut(s) 161, 446
ApoI RAATTY 2 cut(s) 257, 553
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AseI ATTAAT 1 cut(s) 399
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 115
BamHI GGATCC 1 cut(s) 412
BanI GGYRCC 1 cut(s) 496
BbsI GAAGAC 2 cut(s) 188, 327
BbvI GCAGC 2 cut(s) 148, 458
BccI CCATC 6 cut(s) 22, 94, 100, 106, 151, 413
BciT130I CCWGG 2 cut(s) 168, 390
BcnI CCSGG 1 cut(s) 48
BfaI CTAG 2 cut(s) 18, 144
BfmI CTRYAG 1 cut(s) 138
BisI GCNGC 2 cut(s) 162, 447
BlsI GCNGC 2 cut(s) 163, 448
Bme1390I CCNGG 3 cut(s) 48, 168, 390
BmiI GGNNCC 3 cut(s) 394, 414, 498
BmrFI CCNGG 3 cut(s) 48, 168, 390
BmrI ACTGGG 1 cut(s) 273
BmuI ACTGGG 1 cut(s) 273
BpiI GAAGAC 2 cut(s) 188, 327
BpmI CTGGAG 1 cut(s) 411
BpuMI CCSGG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 186
BsaWI WCCGGW 2 cut(s) 409, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 268
BseAI TCCGGA 2 cut(s) 409, 415
BseBI CCWGG 2 cut(s) 168, 390
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 2 cut(s) 362, 424
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 1 cut(s) 268
BseXI GCAGC 2 cut(s) 148, 458
BsgI GTGCAG 2 cut(s) 147, 465
Bsh1236I CGCG 1 cut(s) 30
BshFI GGCC 1 cut(s) 367
BshNI GGYRCC 1 cut(s) 496
BsiSI CCGG 3 cut(s) 48, 410, 416
BslFI GGGAC 4 cut(s) 143, 259, 480, 502
BslI CCNNNNNNNGG 1 cut(s) 75
BsmFI GGGAC 4 cut(s) 143, 259, 480, 502
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 1 cut(s) 367
Bsp13I TCCGGA 2 cut(s) 409, 415
Bsp143I GATC 2 cut(s) 105, 412
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 1 cut(s) 424
BspEI TCCGGA 2 cut(s) 409, 415
BspFNI CGCG 1 cut(s) 30
BspHI TCATGA 1 cut(s) 563
BspLI GGNNCC 3 cut(s) 394, 414, 498
BspPI GGATC 2 cut(s) 407, 420
BspT107I GGYRCC 1 cut(s) 496
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 2 cut(s) 105, 412
Bst2UI CCWGG 2 cut(s) 168, 390
Bst4CI ACNGT 3 cut(s) 151, 222, 518
BstC8I GCNNGC 2 cut(s) 201, 369
BstDEI CTNAG 2 cut(s) 432, 492
BstF5I GGATG 2 cut(s) 362, 424
BstFNI CGCG 1 cut(s) 30
BstKTI GATC 2 cut(s) 108, 415
BstMBI GATC 2 cut(s) 105, 412
BstNI CCWGG 2 cut(s) 168, 390
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 3 cut(s) 46, 166, 388
BstSFI CTRYAG 1 cut(s) 138
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 148, 458
BstV2I GAAGAC 2 cut(s) 188, 327
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BsuRI GGCC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 362, 424
BtsIMutI CAGTG 2 cut(s) 261, 514
Cac8I GCNNGC 2 cut(s) 201, 369
CciI TCATGA 1 cut(s) 563
CseI GACGC 1 cut(s) 19
CsiI ACCWGGT 1 cut(s) 166
CviAII CATG 3 cut(s) 35, 470, 564
CviJI RGCY 9 cut(s) 11, 143, 161, 203, 253, 367, 395, 449, 541
CviKI_1 RGCY 9 cut(s) 11, 143, 161, 203, 253, 367, 395, 449, 541
DdeI CTNAG 2 cut(s) 432, 492
DpnI GATC 2 cut(s) 107, 414
DpnII GATC 2 cut(s) 105, 412
EcoRII CCWGG 2 cut(s) 166, 388
FaeI CATG 3 cut(s) 38, 473, 567
FaiI YATR 8 cut(s) 36, 57, 59, 273, 300, 378, 471, 565
FaqI GGGAC 4 cut(s) 143, 259, 480, 502
FatI CATG 3 cut(s) 34, 469, 563
Fnu4HI GCNGC 2 cut(s) 162, 447
FokI GGATG 2 cut(s) 369, 431
Fsp4HI GCNGC 2 cut(s) 162, 447
FspBI CTAG 2 cut(s) 18, 144
GluI GCNGC 2 cut(s) 162, 447
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 1 cut(s) 367
HapII CCGG 3 cut(s) 48, 410, 416
HgaI GACGC 1 cut(s) 19
Hin1II CATG 3 cut(s) 38, 473, 567
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 2 cut(s) 131, 229
HpaII CCGG 3 cut(s) 48, 410, 416
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 6 cut(s) 226, 354, 410, 416, 548, 564
Hpy8I GTNNAC 1 cut(s) 523
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 3 cut(s) 151, 222, 518
HpyCH4V TGCA 4 cut(s) 164, 371, 446, 560
HpyF3I CTNAG 2 cut(s) 432, 492
Hsp92II CATG 3 cut(s) 38, 473, 567
Kpn2I TCCGGA 2 cut(s) 409, 415
Kzo9I GATC 2 cut(s) 105, 412
LmnI GCTCC 1 cut(s) 392
Lsp1109I GCAGC 2 cut(s) 148, 458
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 2 cut(s) 18, 144
MaeIII GTNAC 1 cut(s) 458
MalI GATC 2 cut(s) 107, 414
MboI GATC 2 cut(s) 105, 412
MboII GAAGA 4 cut(s) 193, 203, 299, 327
MfeI CAATTG 1 cut(s) 71
MflI RGATCY 1 cut(s) 412
MluCI AATT 3 cut(s) 71, 257, 553
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 6 cut(s) 69, 74, 120, 181, 373, 478
MroI TCCGGA 2 cut(s) 409, 415
MseI TTAA 3 cut(s) 348, 399, 537
MspI CCGG 3 cut(s) 48, 410, 416
MspR9I CCNGG 3 cut(s) 48, 168, 390
MunI CAATTG 1 cut(s) 71
Mva1269I GAATGC 1 cut(s) 371
MvaI CCWGG 2 cut(s) 168, 390
MvnI CGCG 1 cut(s) 30
NciI CCSGG 1 cut(s) 48
NdeII GATC 2 cut(s) 105, 412
NlaIII CATG 3 cut(s) 38, 473, 567
NlaIV GGNNCC 3 cut(s) 394, 414, 498
NmuCI GTSAC 1 cut(s) 458
NspI RCATGY 1 cut(s) 473
PagI TCATGA 1 cut(s) 563
PciI ACATGT 1 cut(s) 469
PctI GAATGC 1 cut(s) 371
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 2 cut(s) 163, 448
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PscI ACATGT 1 cut(s) 469
PshBI ATTAAT 1 cut(s) 399
Psp6I CCWGG 2 cut(s) 166, 388
PspGI CCWGG 2 cut(s) 166, 388
PspN4I GGNNCC 3 cut(s) 394, 414, 498
PsrI GAACNNNNNNTAC 2 cut(s) 421, 453
PsuI RGATCY 1 cut(s) 412
SaqAI TTAA 3 cut(s) 348, 399, 537
SatI GCNGC 2 cut(s) 162, 447
Sau3AI GATC 2 cut(s) 105, 412
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 3 cut(s) 48, 168, 390
SetI ASST 8 cut(s) 66, 145, 172, 282, 443, 451, 498, 543
SexAI ACCWGGT 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 138
Sse9I AATT 3 cut(s) 71, 257, 553
SspMI CTAG 2 cut(s) 18, 144
StyD4I CCNGG 3 cut(s) 46, 166, 388
TaaI ACNGT 3 cut(s) 151, 222, 518
TaqI TCGA 2 cut(s) 22, 533
TaqII GACCGA 1 cut(s) 200
TasI AATT 3 cut(s) 71, 257, 553
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 3 cut(s) 348, 399, 537
Tru9I TTAA 3 cut(s) 348, 399, 537
TscAI CASTG 2 cut(s) 268, 521
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 2 cut(s) 161, 446
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 2 cut(s) 29, 522
TspRI CASTG 2 cut(s) 268, 521
VspI ATTAAT 1 cut(s) 399
XapI RAATTY 2 cut(s) 257, 553
XceI RCATGY 1 cut(s) 473
XspI CTAG 2 cut(s) 18, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.