Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012905

Physical Location & Seq

Genomic Coordinates Reverse (-)

2461674 .. 2464150

Gene Structure 2477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G04870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCGATTTACAGATCTCTAAGAAAGCTAGTTGAAATCAATCACCGGAAAACAAGACCATTCTTCACCGCCGCTACAGCTTCCGGCGGAACCGTTTCTCTGACTCCACCGCAGTTTTCGCCGTTGTTCCCACATTTCTCACACCGTTTATCTCCGCTTTCGAAATGGTTCGTTCCTCTTAATGGACCTCTCTTCTTATCTTCTCCTCCTTGGAAACTTCTCCAGTCTGCGACACCTTTGCACTGGCGCGGAAACGGCTCTGTTTTGAAAAAAGTCGAAGCTCTGAATCTTAGATTGGATCGAATTAGAAGCAGAACTAGGTTTCCGAGACAGTTAGGGTTACAGTCTGTGGTACCAAACATATTGACGGTGGATCGCAACGATTCCAAGGAAGAAGATGGTGGAAAATTAGTCAAGAGTTTTGTTAATGTGCCGAATATGATATCAATGGCGAGATTAGTATCTGGTCCTGTGCTTTGGTGGATGATCTCGAATGAGATGTATTCTTCTGCTTTCTTAGGGTTGGCTGTTTCTGGAGCTAGTGATTGGTTAGATGGTTACGTGGCTCGGAGGATGAAGATTAACTCTGTGGTTGGCTCGTACCTTGATCCTCTTGCAGACAAGGTTCTTATCGGGTGTGTAGCAGTAGCAATGGTGCAGAAGGATCTCTTACATCCTGGACTGGTTGGAATTGTGTTGTTACGGGATGTTGCACTCGTTGGTGGTGCAGTTTACCTAAGGGCACTAAACTTGGACTGGAAGTGGAAAACTTGGAGTGACTTCTTCAATCTAGATGGTTCAAGTCCTCAGAAAGTAGAACCATTGTTTATAAGCAAGGTGAATACAGTTTTCCAGTTGACTCTAGTCGCTGGTGCAATACTTCAACCAGAGTTTGGGAATCCAGACACCCAGACATGGATCACTTATCTAAGCTGGTTAGTTGCTTCGACGACTATGGCTTCAACTGCAGCTTATGGTGTACAATACTGGAAGAAGAGACCTATATCTATGATTAAGAGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0008808 GO:0009058 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010243 GO:0014070 GO:0016020 GO:0016740 GO:0016772 GO:0016780 GO:0019637 GO:0030145 GO:0030572 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032049 GO:0033993 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0046683 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0090407 GO:0097066 GO:0097068 GO:1901576 GO:1901698 GO:1901700 GO:1904386 GO:1905711

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

341

Amino Acids

38.04

Weight (kDa)

10.15

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	143 - 314	2.5e-25	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04870
fragaria_vesca	FvH4_3g02430
malus_domestica	MD10G1318100.v1.1
prunus_persica	Prupe.4G023700_v2.0.a1 Prupe.4G023700_v2.0.a1
pyrus_communis	pycom05g31260 pycom10g26960
rosa_chinensis	RchiOBHm_Chr5g0003681
rosa_laevigata	RLG00000031165
rosa_multiflora	Rmu_co7992166.1_g000001 Rmu_co8494381.1_g000001 Rmu_sc0028089.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072260
rosa_rugosa	Rorug04G0405800
rosa_samantha	Rh5AG032600 Rh5BG031200 Rh5CG035300
rosa_wichuraiana	Rw5G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	830
Acc65I	GGTACC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	352
AccB7I	CCANNNNNTGG	1 cut(s)	893
AccII	CGCG	1 cut(s)	249
AciI	CCGC	6 cut(s)	69, 72, 87, 110, 155, 249
AclWI	GGATC	5 cut(s)	306, 381, 602, 672, 926
AfaI	GTAC	3 cut(s)	354, 602, 981
AfiI	CCNNNNNNNGG	3 cut(s)	182, 893, 915
AgsI	TTSAA	6 cut(s)	35, 268, 787, 801, 884, 963
AjnI	CCWGG	1 cut(s)	676
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AloI	GAACNNNNNNTCC	2 cut(s)	307, 339
AluBI	AGCT	6 cut(s)	28, 80, 281, 539, 933, 971
AluI	AGCT	6 cut(s)	28, 80, 281, 539, 933, 971
Alw26I	GTCTC	2 cut(s)	322, 991
AlwI	GGATC	5 cut(s)	306, 381, 602, 672, 926
ApeKI	GCWGC	1 cut(s)	968
Asp700I	GAANNNNTTC	2 cut(s)	94, 167
Asp718I	GGTACC	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	2 cut(s)	185, 467
AsuHPI	GGTGA	3 cut(s)	35, 58, 850
AsuII	TTCGAA	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	185, 467
AxyI	CCTNAGG	1 cut(s)	737
BaeGI	GKGCMC	1 cut(s)	745
BanI	GGYRCC	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	980
BccI	CCATC	3 cut(s)	392, 548, 788
BceAI	ACGGC	2 cut(s)	106, 271
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	1 cut(s)	678
BcoDI	GTCTC	2 cut(s)	322, 991
BfaI	CTAG	5 cut(s)	29, 318, 540, 791, 863
BfmI	CTRYAG	2 cut(s)	75, 966
BglII	AGATCT	1 cut(s)	14
BisI	GCNGC	2 cut(s)	72, 969
BlsI	GCNGC	2 cut(s)	73, 970
Bme1390I	CCNGG	1 cut(s)	678
Bme18I	GGWCC	2 cut(s)	185, 467
BmgT120I	GGNCC	2 cut(s)	185, 467
BmiI	GGNNCC	2 cut(s)	91, 354
BmrFI	CCNGG	1 cut(s)	678
BoxI	GACNNNNGTC	1 cut(s)	863
BpmI	CTGGAG	2 cut(s)	206, 555
Bpu14I	TTCGAA	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	562
BsaBI	GATNNNNATC	1 cut(s)	460
BsaI	GGTCTC	1 cut(s)	991
BsaJI	CCNNGG	2 cut(s)	209, 387
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 893, 915
Bse1I	ACTGG	6 cut(s)	223, 248, 687, 761, 853, 992
Bse21I	CCTNAGG	1 cut(s)	737
Bse3DI	GCAATG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	678
BseDI	CCNNGG	2 cut(s)	209, 387
BseGI	GGATG	4 cut(s)	489, 579, 673, 712
BseJI	GATNNNNATC	1 cut(s)	460
BseLI	CCNNNNNNNGG	3 cut(s)	182, 893, 915
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	1 cut(s)	821
BseNI	ACTGG	6 cut(s)	223, 248, 687, 761, 853, 992
BseRI	GAGGAG	1 cut(s)	195
BseSI	GKGCMC	1 cut(s)	745
BseXI	GCAGC	1 cut(s)	980
BsgI	GTGCAG	2 cut(s)	677, 747
Bsh1236I	CGCG	1 cut(s)	249
BshNI	GGYRCC	1 cut(s)	352
BsiSI	CCGG	2 cut(s)	46, 84
BslI	CCNNNNNNNGG	3 cut(s)	182, 893, 915
BsmAI	GTCTC	2 cut(s)	322, 991
Bso31I	GGTCTC	1 cut(s)	991
Bsp119I	TTCGAA	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	745
Bsp1407I	TGTACA	1 cut(s)	979
Bsp143I	GATC	8 cut(s)	14, 298, 373, 486, 607, 664, 918, 1019
BspACI	CCGC	6 cut(s)	69, 72, 87, 110, 155, 249
BspCNI	CTCAG	1 cut(s)	820
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	91, 354
BspMAI	CTGCAG	1 cut(s)	970
BspPI	GGATC	5 cut(s)	306, 381, 602, 672, 926
BspT104I	TTCGAA	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	352
BspTNI	GGTCTC	1 cut(s)	991
BsrDI	GCAATG	1 cut(s)	657
BsrGI	TGTACA	1 cut(s)	979
BsrI	ACTGG	6 cut(s)	223, 248, 687, 761, 853, 992
BssECI	CCNNGG	2 cut(s)	209, 387
BssMI	GATC	8 cut(s)	14, 298, 373, 486, 607, 664, 918, 1019
BssT1I	CCWWGG	2 cut(s)	209, 387
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	6 cut(s)	94, 146, 333, 345, 370, 847
Bst6I	CTCTTC	2 cut(s)	197, 989
BstAUI	TGTACA	1 cut(s)	979
BstBAI	YACGTR	1 cut(s)	562
BstBI	TTCGAA	1 cut(s)	161
BstDEI	CTNAG	6 cut(s)	20, 290, 517, 737, 807, 929
BstF5I	GGATG	4 cut(s)	489, 579, 673, 712
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	8 cut(s)	17, 301, 376, 489, 610, 667, 921, 1022
BstMAI	GTCTC	2 cut(s)	322, 991
BstMBI	GATC	8 cut(s)	14, 298, 373, 486, 607, 664, 918, 1019
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 118, 255, 965
BstNI	CCWGG	1 cut(s)	678
BstPAI	GACNNNNGTC	1 cut(s)	863
BstSCI	CCNGG	1 cut(s)	676
BstSFI	CTRYAG	2 cut(s)	75, 966
BstSLI	GKGCMC	1 cut(s)	745
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	980
BstX2I	RGATCY	2 cut(s)	14, 664
BstYI	RGATCY	2 cut(s)	14, 664
Bsu36I	CCTNAGG	1 cut(s)	737
BtsCI	GGATG	4 cut(s)	489, 579, 673, 712
BtsIMutI	CAGTG	1 cut(s)	241
CfoI	GCGC	1 cut(s)	249
Cfr13I	GGNCC	2 cut(s)	185, 467
Csp6I	GTAC	3 cut(s)	353, 601, 980
CviAII	CATG	1 cut(s)	915
CviQI	GTAC	3 cut(s)	353, 601, 980
DdeI	CTNAG	6 cut(s)	20, 290, 517, 737, 807, 929
DpnI	GATC	8 cut(s)	16, 300, 375, 488, 609, 666, 920, 1021
DpnII	GATC	8 cut(s)	14, 298, 373, 486, 607, 664, 918, 1019
Eam1104I	CTCTTC	2 cut(s)	197, 989
EarI	CTCTTC	2 cut(s)	197, 989
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	209, 387
Eco31I	GGTCTC	1 cut(s)	991
Eco32I	GATATC	1 cut(s)	444
Eco47I	GGWCC	2 cut(s)	185, 467
Eco81I	CCTNAGG	1 cut(s)	737
EcoRII	CCWGG	1 cut(s)	676
EcoRV	GATATC	1 cut(s)	444
EcoT14I	CCWWGG	2 cut(s)	209, 387
ErhI	CCWWGG	2 cut(s)	209, 387
FaeI	CATG	1 cut(s)	918
FaiI	YATR	9 cut(s)	362, 440, 830, 916, 956, 975, 1004, 1010, 1024
FalI	AAGNNNNNCTT	2 cut(s)	653, 685
FatI	CATG	1 cut(s)	914
Fnu4HI	GCNGC	2 cut(s)	72, 969
FokI	GGATG	4 cut(s)	496, 586, 660, 719
Fsp4HI	GCNGC	2 cut(s)	72, 969
FspBI	CTAG	5 cut(s)	29, 318, 540, 791, 863
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	2 cut(s)	72, 969
GsuI	CTGGAG	2 cut(s)	206, 555
HapII	CCGG	2 cut(s)	46, 84
HhaI	GCGC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	918
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HincII	GTYRAC	1 cut(s)	858
HindII	GTYRAC	1 cut(s)	858
HinfI	GANTC	5 cut(s)	103, 286, 383, 859, 898
HpaII	CCGG	2 cut(s)	46, 84
HphI	GGTGA	3 cut(s)	35, 58, 850
Hpy166II	GTNNAC	3 cut(s)	733, 858, 980
Hpy188I	TCNGA	5 cut(s)	102, 285, 327, 570, 810
Hpy188III	TCNNGA	5 cut(s)	415, 490, 534, 791, 902
Hpy8I	GTNNAC	3 cut(s)	733, 858, 980
Hpy99I	CGWCG	1 cut(s)	952
HpyAV	CCTTC	1 cut(s)	655
HpyCH4III	ACNGT	6 cut(s)	94, 146, 333, 345, 370, 847
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	7 cut(s)	241, 617, 658, 713, 728, 875, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 118, 255, 965
HpyF3I	CTNAG	6 cut(s)	20, 290, 517, 737, 807, 929
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	1 cut(s)	918
HspAI	GCGC	1 cut(s)	247
KpnI	GGTACC	1 cut(s)	356
Kzo9I	GATC	8 cut(s)	14, 298, 373, 486, 607, 664, 918, 1019
LmnI	GCTCC	1 cut(s)	536
Lsp1109I	GCAGC	1 cut(s)	980
MaeI	CTAG	5 cut(s)	29, 318, 540, 791, 863
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	4 cut(s)	339, 557, 699, 776
MalI	GATC	8 cut(s)	16, 300, 375, 488, 609, 666, 920, 1021
MboI	GATC	8 cut(s)	14, 298, 373, 486, 607, 664, 918, 1019
MflI	RGATCY	2 cut(s)	14, 664
MhlI	GDGCHC	1 cut(s)	745
MluCI	AATT	3 cut(s)	303, 407, 690
MlyI	GAGTC	2 cut(s)	97, 853
MmeI	TCCRAC	1 cut(s)	667
MnlI	CCTC	6 cut(s)	186, 198, 216, 564, 621, 816
MroXI	GAANNNNTTC	2 cut(s)	94, 167
MseI	TTAA	4 cut(s)	180, 426, 582, 1014
MspI	CCGG	2 cut(s)	46, 84
MspR9I	CCNGG	1 cut(s)	678
MvaI	CCWGG	1 cut(s)	678
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	4 cut(s)	77, 118, 255, 965
NdeII	GATC	8 cut(s)	14, 298, 373, 486, 607, 664, 918, 1019
NlaIII	CATG	1 cut(s)	918
NlaIV	GGNNCC	2 cut(s)	91, 354
NmuCI	GTSAC	1 cut(s)	776
NspV	TTCGAA	1 cut(s)	161
PdmI	GAANNNNTTC	2 cut(s)	94, 167
PfeI	GAWTC	3 cut(s)	286, 383, 898
PflMI	CCANNNNNTGG	1 cut(s)	893
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	2 cut(s)	73, 970
PleI	GAGTC	2 cut(s)	97, 853
PpsI	GAGTC	2 cut(s)	97, 853
Ppu21I	YACGTR	1 cut(s)	562
PshAI	GACNNNNGTC	1 cut(s)	863
PsiI	TTATAA	1 cut(s)	830
Psp6I	CCWGG	1 cut(s)	676
PspGI	CCWGG	1 cut(s)	676
PspN4I	GGNNCC	2 cut(s)	91, 354
PspPI	GGNCC	2 cut(s)	185, 467
PstI	CTGCAG	1 cut(s)	970
PsuI	RGATCY	2 cut(s)	14, 664
RsaI	GTAC	3 cut(s)	354, 602, 981
RsaNI	GTAC	3 cut(s)	353, 601, 980
SaqAI	TTAA	4 cut(s)	180, 426, 582, 1014
SatI	GCNGC	2 cut(s)	72, 969
Sau3AI	GATC	8 cut(s)	14, 298, 373, 486, 607, 664, 918, 1019
Sau96I	GGNCC	2 cut(s)	185, 467
SchI	GAGTC	2 cut(s)	97, 853
ScrFI	CCNGG	1 cut(s)	678
SduI	GDGCHC	1 cut(s)	745
SfcI	CTRYAG	2 cut(s)	75, 966
SfuI	TTCGAA	1 cut(s)	161
SinI	GGWCC	2 cut(s)	185, 467
Sse9I	AATT	3 cut(s)	303, 407, 690
SsiI	CCGC	6 cut(s)	69, 72, 87, 110, 155, 249
SspMI	CTAG	5 cut(s)	29, 318, 540, 791, 863
StyD4I	CCNGG	1 cut(s)	676
StyI	CCWWGG	2 cut(s)	209, 387
TaaI	ACNGT	6 cut(s)	94, 146, 333, 345, 370, 847
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	5 cut(s)	161, 276, 301, 491, 947
TasI	AATT	3 cut(s)	303, 407, 690
TatI	WGTACW	1 cut(s)	979
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	3 cut(s)	286, 383, 898
Tru1I	TTAA	4 cut(s)	180, 426, 582, 1014
Tru9I	TTAA	4 cut(s)	180, 426, 582, 1014
TscAI	CASTG	1 cut(s)	248
TseFI	GTSAC	1 cut(s)	776
TseI	GCWGC	1 cut(s)	968
Tsp45I	GTSAC	1 cut(s)	776
TspDTI	ATGAA	1 cut(s)	590
TspRI	CASTG	1 cut(s)	248
Van91I	CCANNNNNTGG	1 cut(s)	893
VpaK11BI	GGWCC	2 cut(s)	185, 467
XbaI	TCTAGA	1 cut(s)	790
XmnI	GAANNNNTTC	2 cut(s)	94, 167
XspI	CTAG	5 cut(s)	29, 318, 540, 791, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.