Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0012905

Physical Location & Seq

Genomic Coordinates Forward (+)

93403789 .. 93406498

Gene Structure 2710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCGGGTTTCCGGTCCCTGAAATCCCTAATTCGAAACCCTAAAAAATCCAGAAGCTTCTTCACCGCCACCGTCTCCCCATTCTCCTCCCCTACCTCTCGCTCCTCCCCATCTCAGATTTCCAGAACCTTCCTCCTCTCTCCTCTCTCCAACTGGATCATCCTCCCCTCCCATGGGCCCCACTGCCCGCTCTTCCTCTCTTCCCCGCCGTGGAAGCTCTCGCAGTCCGCCACGCCGCTCCACCTCCGAGGAAACCCCGCCGTTTTGGAAAAGATCGAAGCTTTGAACTTTAACAATCTGCTGAGGAAGAAGAAGAGAACGACCTCCCCTCCGTCCGAATTGACCTCCGGTTCGGATACGGCCGTGTCGGATCGTCCCCGGTTGAAAGTCGCCGGTGGCGATTTCGTCAATTTGCCCAATTTGATCTCCATGACTCGGCTCATTTCTGGTCCTTTTCTTGGATGGATGATTGTAAATGAGTGGTATTCTGCTGCAATGGTGGGGTTGGCTGTTTCTGGGGCAAGTGACTGGTTGGATGGATATGTGGCTAGGAGGATGAAGATTAATTCTGTTGTTGGCTCCTACCTCGATCCCCTTGCAGATAAGGTTCTCATTGGGTGTGTTGCATTGGCGATGGTGCATAAGGATCTTCTTCACCCTGGTCTTGTTGGAATCATTGTGTTGCGAGATGTTGGCCTCGTTGGTGGTGCAGTGTATCAAAGAGCTAGTAGCTTGGGGTGGAAGTGGAAAAGTTGGTCCGACTTCTTCAACCTTGATGGAACCCGTCCCCAGAAGGTTGAACCTCTCTTTATTAGCAAGGTTAACACAGTTTTCCAGTTGATTTTAGTTGCGGCAGCTCTCCTCCAACCAGAGTTTGGGACACAAGAAACTCAGTCATATGTTACATACCTGAGTTGGTTAGTGGCATCAACAACATTGGCTTCCACTGCAGCATATGGAGCACAGCACTTAAGGAAATCGGCATCCATTGCTCGGAAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0008808 GO:0009058 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010243 GO:0014070 GO:0016020 GO:0016740 GO:0016772 GO:0016780 GO:0019637 GO:0030145 GO:0030572 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032049 GO:0033993 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0046683 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0090407 GO:0097066 GO:0097068 GO:1901576 GO:1901698 GO:1901700 GO:1904386 GO:1905711

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

334

Amino Acids

36.46

Weight (kDa)

10.1

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	137 - 308	1.3e-26	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04870
fragaria_vesca	FvH4_3g02430
malus_domestica	MD10G1318100.v1.1
prunus_persica	Prupe.4G023700_v2.0.a1 Prupe.4G023700_v2.0.a1
pyrus_communis	pycom05g31260 pycom10g26960
rosa_chinensis	RchiOBHm_Chr5g0003681
rosa_laevigata	RLG00000031165
rosa_multiflora	Rmu_co7992166.1_g000001 Rmu_co8494381.1_g000001 Rmu_sc0028089.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072260
rosa_rugosa	Rorug04G0405800
rosa_samantha	Rh5AG032600 Rh5BG031200 Rh5CG035300
rosa_wichuraiana	Rw5G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	875
AccBSI	CCGCTC	2 cut(s)	190, 238
AciI	CCGC	8 cut(s)	5, 66, 188, 206, 228, 236, 258, 851
AclWI	GGATC	4 cut(s)	164, 378, 584, 654
AcoI	YGGCCR	1 cut(s)	360
AfiI	CCNNNNNNNGG	7 cut(s)	173, 174, 210, 435, 458, 875, 993
AflII	CTTAAG	1 cut(s)	970
AgsI	TTSAA	4 cut(s)	286, 385, 769, 800
AjnI	CCWGG	1 cut(s)	658
AluBI	AGCT	6 cut(s)	57, 217, 281, 725, 732, 857
AluI	AGCT	6 cut(s)	57, 217, 281, 725, 732, 857
Alw21I	GWGCWC	1 cut(s)	964
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	4 cut(s)	164, 378, 584, 654
AoxI	GGCC	3 cut(s)	176, 360, 694
ApaI	GGGCCC	1 cut(s)	180
ApeKI	GCWGC	3 cut(s)	491, 854, 950
ArsI	GACNNNNNNTTYG	2 cut(s)	334, 366
AseI	ATTAAT	1 cut(s)	564
AspS9I	GGNCC	5 cut(s)	15, 176, 177, 449, 756
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	2 cut(s)	55, 647
AsuII	TTCGAA	1 cut(s)	34
AvaII	GGWCC	3 cut(s)	15, 449, 756
BaeGI	GKGCMC	1 cut(s)	180
BaeI	ACNNNNGTAYC	2 cut(s)	348, 381
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	964
BbvCI	CCTCAGC	1 cut(s)	302
BbvI	GCAGC	3 cut(s)	478, 866, 962
BccI	CCATC	5 cut(s)	118, 456, 530, 628, 770
BceAI	ACGGC	4 cut(s)	193, 245, 347, 375
BcgI	CGANNNNNNTGC	2 cut(s)	578, 612
BciT130I	CCWGG	1 cut(s)	660
BciVI	GTATCC	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	2 cut(s)	549, 726
BfmI	CTRYAG	1 cut(s)	948
BfrI	CTTAAG	1 cut(s)	970
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	5 cut(s)	236, 492, 852, 855, 951
BlsI	GCNGC	5 cut(s)	237, 493, 853, 856, 952
Bme1390I	CCNGG	2 cut(s)	379, 660
Bme18I	GGWCC	3 cut(s)	15, 449, 756
BmgT120I	GGNCC	5 cut(s)	15, 176, 177, 449, 756
BmiI	GGNNCC	5 cut(s)	17, 178, 179, 580, 781
BmrFI	CCNGG	2 cut(s)	379, 660
BmsI	GCATC	2 cut(s)	935, 992
Bpu10I	CCTNAGC	1 cut(s)	302
Bpu14I	TTCGAA	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	379
BsaJI	CCNNGG	5 cut(s)	172, 209, 247, 377, 658
BsaWI	WCCGGW	2 cut(s)	12, 347
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	7 cut(s)	173, 174, 210, 435, 458, 875, 993
Bse118I	RCCGGY	1 cut(s)	392
Bse1I	ACTGG	3 cut(s)	158, 533, 835
Bse3DI	GCAATG	2 cut(s)	501, 987
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	5 cut(s)	172, 209, 247, 377, 658
BseGI	GGATG	6 cut(s)	159, 467, 471, 541, 561, 983
BseLI	CCNNNNNNNGG	7 cut(s)	173, 174, 210, 435, 458, 875, 993
BseMI	GCAATG	2 cut(s)	501, 987
BseMII	CTCAG	4 cut(s)	128, 293, 902, 905
BseNI	ACTGG	3 cut(s)	158, 533, 835
BseRI	GAGGAG	5 cut(s)	76, 94, 125, 132, 851
BseSI	GKGCMC	1 cut(s)	180
BseX3I	CGGCCG	1 cut(s)	360
BseXI	GCAGC	3 cut(s)	478, 866, 962
BsgI	GTGCAG	1 cut(s)	729
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	3 cut(s)	178, 362, 696
BsiEI	CGRYCG	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	964
BsiSI	CCGG	4 cut(s)	13, 348, 379, 393
BslFI	GGGAC	3 cut(s)	360, 771, 892
BslI	CCNNNNNNNGG	7 cut(s)	173, 174, 210, 435, 458, 875, 993
BsmAI	GTCTC	1 cut(s)	79
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	3 cut(s)	360, 771, 892
BsnI	GGCC	3 cut(s)	178, 362, 696
Bsp119I	TTCGAA	1 cut(s)	34
Bsp120I	GGGCCC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	180, 964
Bsp143I	GATC	6 cut(s)	156, 273, 370, 423, 589, 646
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	8 cut(s)	5, 66, 188, 206, 228, 236, 258, 851
BspANI	GGCC	3 cut(s)	178, 362, 696
BspCNI	CTCAG	4 cut(s)	127, 294, 903, 904
BspLI	GGNNCC	5 cut(s)	17, 178, 179, 580, 781
BspMAI	CTGCAG	1 cut(s)	952
BspPI	GGATC	4 cut(s)	164, 378, 584, 654
BspQI	GCTCTTC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	970
BsrBI	CCGCTC	2 cut(s)	190, 238
BsrDI	GCAATG	2 cut(s)	501, 987
BsrFI	RCCGGY	1 cut(s)	392
BsrI	ACTGG	3 cut(s)	158, 533, 835
BssAI	RCCGGY	1 cut(s)	392
BssECI	CCNNGG	5 cut(s)	172, 209, 247, 377, 658
BssMI	GATC	6 cut(s)	156, 273, 370, 423, 589, 646
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	2 cut(s)	73, 829
Bst6I	CTCTTC	3 cut(s)	197, 205, 308
BstAFI	CTTAAG	1 cut(s)	970
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstBI	TTCGAA	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	4 cut(s)	114, 302, 891, 911
BstDSI	CCRYGG	2 cut(s)	172, 209
BstF5I	GGATG	6 cut(s)	159, 467, 471, 541, 561, 983
BstKTI	GATC	6 cut(s)	159, 276, 373, 426, 592, 649
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	6 cut(s)	156, 273, 370, 423, 589, 646
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	4 cut(s)	214, 947, 959, 989
BstNI	CCWGG	1 cut(s)	660
BstSCI	CCNGG	2 cut(s)	377, 658
BstSFI	CTRYAG	1 cut(s)	948
BstSLI	GKGCMC	1 cut(s)	180
BstV1I	GCAGC	3 cut(s)	478, 866, 962
BstX2I	RGATCY	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	646
BstZI	CGGCCG	1 cut(s)	360
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	3 cut(s)	178, 362, 696
BtgI	CCRYGG	2 cut(s)	172, 209
BtgZI	GCGATG	1 cut(s)	647
BtsCI	GGATG	6 cut(s)	159, 467, 471, 541, 561, 983
BtsI	GCAGTG	3 cut(s)	181, 717, 945
BtsIMutI	CAGTG	3 cut(s)	181, 717, 945
Cac8I	GCNNGC	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	392
Cfr13I	GGNCC	5 cut(s)	15, 176, 177, 449, 756
CviAII	CATG	2 cut(s)	173, 430
DdeI	CTNAG	4 cut(s)	114, 302, 891, 911
DpnI	GATC	6 cut(s)	158, 275, 372, 425, 591, 648
DpnII	GATC	6 cut(s)	156, 273, 370, 423, 589, 646
EaeI	YGGCCR	1 cut(s)	360
EagI	CGGCCG	1 cut(s)	360
Eam1104I	CTCTTC	3 cut(s)	197, 205, 308
EarI	CTCTTC	3 cut(s)	197, 205, 308
EciI	GGCGGA	1 cut(s)	217
EclXI	CGGCCG	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	180
Eco47I	GGWCC	3 cut(s)	15, 449, 756
Eco52I	CGGCCG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	658
EcoT14I	CCWWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	2 cut(s)	176, 433
FaiI	YATR	9 cut(s)	174, 431, 543, 642, 898, 900, 907, 955, 957
FaqI	GGGAC	3 cut(s)	360, 771, 892
FatI	CATG	2 cut(s)	172, 429
FauI	CCCGC	3 cut(s)	195, 213, 265
FauNDI	CATATG	2 cut(s)	898, 955
Fnu4HI	GCNGC	5 cut(s)	236, 492, 852, 855, 951
FokI	GGATG	6 cut(s)	146, 474, 478, 548, 568, 970
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	5 cut(s)	236, 492, 852, 855, 951
FspBI	CTAG	2 cut(s)	549, 726
GluI	GCNGC	5 cut(s)	236, 492, 852, 855, 951
HaeIII	GGCC	3 cut(s)	178, 362, 696
HapII	CCGG	4 cut(s)	13, 348, 379, 393
Hin1II	CATG	2 cut(s)	176, 433
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HindIII	AAGCTT	2 cut(s)	55, 279
HinfI	GANTC	2 cut(s)	433, 672
HpaI	GTTAAC	1 cut(s)	823
HpaII	CCGG	4 cut(s)	13, 348, 379, 393
HphI	GGTGA	2 cut(s)	55, 647
Hpy166II	GTNNAC	1 cut(s)	823
Hpy188I	TCNGA	7 cut(s)	117, 248, 337, 355, 370, 760, 996
Hpy188III	TCNNGA	2 cut(s)	51, 123
Hpy8I	GTNNAC	1 cut(s)	823
HpyAV	CCTTC	2 cut(s)	139, 787
HpyCH4III	ACNGT	2 cut(s)	73, 829
HpyCH4V	TGCA	6 cut(s)	494, 599, 626, 640, 710, 950
HpyF10VI	GCNNNNNNNGC	4 cut(s)	214, 947, 959, 989
HpyF3I	CTNAG	4 cut(s)	114, 302, 891, 911
Hsp92II	CATG	2 cut(s)	176, 433
KspAI	GTTAAC	1 cut(s)	823
Kzo9I	GATC	6 cut(s)	156, 273, 370, 423, 589, 646
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	4 cut(s)	107, 243, 584, 959
Lsp1109I	GCAGC	3 cut(s)	478, 866, 962
LweI	GCATC	2 cut(s)	935, 992
MaeI	CTAG	2 cut(s)	549, 726
MaeIII	GTNAC	2 cut(s)	524, 901
MalI	GATC	6 cut(s)	158, 275, 372, 425, 591, 648
MbiI	CCGCTC	2 cut(s)	190, 238
MboI	GATC	6 cut(s)	156, 273, 370, 423, 589, 646
MflI	RGATCY	1 cut(s)	646
MhlI	GDGCHC	2 cut(s)	180, 964
MluCI	AATT	5 cut(s)	30, 338, 409, 418, 565
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	6 cut(s)	174, 348, 513, 649, 783, 889
MseI	TTAA	4 cut(s)	291, 564, 822, 971
MspCI	CTTAAG	1 cut(s)	970
MspI	CCGG	4 cut(s)	13, 348, 379, 393
MspR9I	CCNGG	2 cut(s)	379, 660
MvaI	CCWGG	1 cut(s)	660
MwoI	GCNNNNNNNGC	4 cut(s)	214, 947, 959, 989
NciI	CCSGG	1 cut(s)	379
NcoI	CCATGG	1 cut(s)	172
NdeI	CATATG	2 cut(s)	898, 955
NdeII	GATC	6 cut(s)	156, 273, 370, 423, 589, 646
NlaIII	CATG	2 cut(s)	176, 433
NlaIV	GGNNCC	5 cut(s)	17, 178, 179, 580, 781
NmeAIII	GCCGAG	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	524
NspV	TTCGAA	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	672
PflMI	CCANNNNNTGG	1 cut(s)	875
PkrI	GCNGC	5 cut(s)	237, 493, 853, 856, 952
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PshBI	ATTAAT	1 cut(s)	564
Psp6I	CCWGG	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	5 cut(s)	17, 178, 179, 580, 781
PspOMI	GGGCCC	1 cut(s)	176
PspPI	GGNCC	5 cut(s)	15, 176, 177, 449, 756
PstI	CTGCAG	1 cut(s)	952
PsuI	RGATCY	1 cut(s)	646
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	4 cut(s)	291, 564, 822, 971
SatI	GCNGC	5 cut(s)	236, 492, 852, 855, 951
Sau3AI	GATC	6 cut(s)	156, 273, 370, 423, 589, 646
Sau96I	GGNCC	5 cut(s)	15, 176, 177, 449, 756
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	2 cut(s)	379, 660
SduI	GDGCHC	2 cut(s)	180, 964
SfaNI	GCATC	2 cut(s)	935, 992
SfcI	CTRYAG	1 cut(s)	948
SfuI	TTCGAA	1 cut(s)	34
SgrAI	CRCCGGYG	1 cut(s)	392
SinI	GGWCC	3 cut(s)	15, 449, 756
SmlI	CTYRAG	1 cut(s)	970
SmoI	CTYRAG	1 cut(s)	970
Sse9I	AATT	5 cut(s)	30, 338, 409, 418, 565
SsiI	CCGC	8 cut(s)	5, 66, 188, 206, 228, 236, 258, 851
SspMI	CTAG	2 cut(s)	549, 726
StyD4I	CCNGG	2 cut(s)	377, 658
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	73, 829
TaqI	TCGA	3 cut(s)	34, 276, 588
TasI	AATT	5 cut(s)	30, 338, 409, 418, 565
TauI	GCSGC	2 cut(s)	238, 854
TfiI	GAWTC	1 cut(s)	672
Tru1I	TTAA	4 cut(s)	291, 564, 822, 971
Tru9I	TTAA	4 cut(s)	291, 564, 822, 971
TscAI	CASTG	3 cut(s)	188, 717, 952
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	3 cut(s)	491, 854, 950
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	1 cut(s)	572
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	3 cut(s)	188, 717, 952
Van91I	CCANNNNNTGG	1 cut(s)	875
Vha464I	CTTAAG	1 cut(s)	970
VpaK11BI	GGWCC	3 cut(s)	15, 449, 756
VspI	ATTAAT	1 cut(s)	564
XcmI	CCANNNNNNNNNTGG	1 cut(s)	872
XspI	CTAG	2 cut(s)	549, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.