Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7992166.1

Orthogroup ID

OG0012905

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 299

Gene Structure 298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7992166.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 298 bp

atggcgggtttccggtccctgaaatccctaattcgaaaccctaaaaaatccagaagcttcttcaccgccaccgtctccccattctcctcccctacctcccgctcctccccatctcagatttccagaaccttcctcctctctcctctctccaactggatcatcctcccctcccatgggccccactgcccgctcttcctctcttccccgccgtggaagctctcgcagtccgccacgccgctccacctccgcggaaacgccgccgttttggaaaagatcgaagctttgaactttaacaatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0008808 GO:0009058 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010243 GO:0014070 GO:0016020 GO:0016740 GO:0016772 GO:0016780 GO:0019637 GO:0030145 GO:0030572 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032049 GO:0033993 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0046683 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0090407 GO:0097066 GO:0097068 GO:1901576 GO:1901698 GO:1901700 GO:1904386 GO:1905711

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

99

Amino Acids

10.9

Weight (kDa)

11.73

Isoelectric Point (pI)

80.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04870
fragaria_vesca	FvH4_3g02430
malus_domestica	MD10G1318100.v1.1
prunus_persica	Prupe.4G023700_v2.0.a1 Prupe.4G023700_v2.0.a1
pyrus_communis	pycom05g31260 pycom10g26960
rosa_chinensis	RchiOBHm_Chr5g0003681
rosa_laevigata	RLG00000031165
rosa_multiflora	Rmu_co7992166.1_g000001 Rmu_co8494381.1_g000001 Rmu_sc0028089.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072260
rosa_rugosa	Rorug04G0405800
rosa_samantha	Rh5AG032600 Rh5BG031200 Rh5CG035300
rosa_wichuraiana	Rw5G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	102, 190, 238
AccII	CGCG	1 cut(s)	249
AclWI	GGATC	1 cut(s)	164
AfiI	CCNNNNNNNGG	3 cut(s)	173, 174, 210
AgsI	TTSAA	1 cut(s)	286
AluBI	AGCT	3 cut(s)	57, 217, 281
AluI	AGCT	3 cut(s)	57, 217, 281
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	1 cut(s)	176
ApaI	GGGCCC	1 cut(s)	180
AspS9I	GGNCC	3 cut(s)	15, 176, 177
AsuHPI	GGTGA	1 cut(s)	55
AsuII	TTCGAA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	15
BaeGI	GKGCMC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	180
BccI	CCATC	1 cut(s)	118
BceAI	ACGGC	2 cut(s)	193, 245
BcoDI	GTCTC	1 cut(s)	79
BisI	GCNGC	2 cut(s)	236, 258
BlsI	GCNGC	2 cut(s)	237, 259
Bme18I	GGWCC	1 cut(s)	15
BmgT120I	GGNCC	3 cut(s)	15, 176, 177
BmiI	GGNNCC	3 cut(s)	17, 178, 179
Bpu14I	TTCGAA	1 cut(s)	34
BsaJI	CCNNGG	3 cut(s)	172, 209, 247
BsaWI	WCCGGW	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 174, 210
Bse1I	ACTGG	1 cut(s)	158
BseDI	CCNNGG	3 cut(s)	172, 209, 247
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	3 cut(s)	173, 174, 210
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	4 cut(s)	76, 94, 125, 132
BseSI	GKGCMC	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	13
BslI	CCNNNNNNNGG	3 cut(s)	173, 174, 210
BsmAI	GTCTC	1 cut(s)	79
BsmBI	CGTCTC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	178
Bsp119I	TTCGAA	1 cut(s)	34
Bsp120I	GGGCCC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	156, 273
Bsp19I	CCATGG	1 cut(s)	172
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	3 cut(s)	17, 178, 179
BspPI	GGATC	1 cut(s)	164
BspQI	GCTCTTC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	34
BsrBI	CCGCTC	3 cut(s)	102, 190, 238
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	172, 209, 247
BssMI	GATC	2 cut(s)	156, 273
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	2 cut(s)	197, 205
BstBI	TTCGAA	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	3 cut(s)	172, 209, 247
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	2 cut(s)	159, 276
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	2 cut(s)	156, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	180
BstUI	CGCG	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	178
BtgI	CCRYGG	3 cut(s)	172, 209, 247
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	188
Cfr13I	GGNCC	3 cut(s)	15, 176, 177
Cfr42I	CCGCGG	1 cut(s)	250
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	4 cut(s)	57, 178, 217, 281
CviKI_1	RGCY	4 cut(s)	57, 178, 217, 281
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	2 cut(s)	158, 275
DpnII	GATC	2 cut(s)	156, 273
Eam1104I	CTCTTC	2 cut(s)	197, 205
EarI	CTCTTC	2 cut(s)	197, 205
EciI	GGCGGA	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	15
EcoO109I	RGGNCCY	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	1 cut(s)	176
FaiI	YATR	1 cut(s)	174
FatI	CATG	1 cut(s)	172
FauI	CCCGC	3 cut(s)	107, 195, 213
Fnu4HI	GCNGC	2 cut(s)	236, 258
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	2 cut(s)	236, 258
GluI	GCNGC	2 cut(s)	236, 258
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	1 cut(s)	13
Hin1II	CATG	1 cut(s)	176
HindIII	AAGCTT	2 cut(s)	55, 279
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	2 cut(s)	51, 123
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	176
KspI	CCGCGG	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	156, 273
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	2 cut(s)	107, 243
LpnPI	CCDG	5 cut(s)	26, 32, 64, 136, 139
MalI	GATC	2 cut(s)	158, 275
MbiI	CCGCTC	3 cut(s)	102, 190, 238
MboI	GATC	2 cut(s)	156, 273
MboII	GAAGA	3 cut(s)	52, 184, 192
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	174
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	1 cut(s)	13
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	214
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	2 cut(s)	156, 273
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	3 cut(s)	17, 178, 179
NspV	TTCGAA	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	237, 259
PspN4I	GGNNCC	3 cut(s)	17, 178, 179
PspOMI	GGGCCC	1 cut(s)	176
PspPI	GGNCC	3 cut(s)	15, 176, 177
SacII	CCGCGG	1 cut(s)	250
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	2 cut(s)	236, 258
Sau3AI	GATC	2 cut(s)	156, 273
Sau96I	GGNCC	3 cut(s)	15, 176, 177
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	6 cut(s)	59, 98, 131, 219, 246, 283
Sfr303I	CCGCGG	1 cut(s)	250
SfuI	TTCGAA	1 cut(s)	34
SgrBI	CCGCGG	1 cut(s)	250
SinI	GGWCC	1 cut(s)	15
Sse9I	AATT	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	2 cut(s)	34, 276
TasI	AATT	1 cut(s)	30
TauI	GCSGC	2 cut(s)	238, 260
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	188
TspRI	CASTG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.