Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012905

Physical Location & Seq

Genomic Coordinates Reverse (-)

2242294 .. 2245426

Gene Structure 3133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG035300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGGGTTTCCGGTCCCTGAAATCCCTAATTCGAAACCCTAAAAAATCCAGAAGCTTCTTCACCGCCACCGTCTCCCCATTCTCCTCCCCTACCTCTCGCTCCTCCCCATCTCAGATTTCCAGAACCTTCCTCCTCTCTCCTCTCTCCAACTGGATCATCCTCCCCTCCCATGGGCCCCACTGCCCGCTCTTCCTCTCTTCCCCGCCGTGGAAGCTCTCGCAGTCCGCCACGCCGCTCCACCTCCGCGGAAACGCCGCCGTTCTGGAAAAGATCGAAGCTTTGAACTTTAACAATCTGCTCAGGAAGAAGAAGAGAACGACCTCCCCTCCGTCCGAATTGACCTCCGGGTCGGACCCGACCGTGTCGGATCGTCACCGGTTGAAAGTCGCCGGTGGCGATTTCGTCAATTTGCCTAATTTGATCTCCATGACTCGGCTGATCTCTGGTCCTTTTCTTGGATGGATGATTATAAATGAGTGGTATTCTGCTGCAATGGTGGGGTTGGCTGTGTCTGGAGCAAGTGACTGGTTGGATGGATCTGTGGCTAGGAGGATGAAGATTAATTCTGTTGTTGGCTCCTACCTCGATCCCCTTGCAGATAAGGTTCTTATTGGGTGTGTTGCATTGGCGATGGTGCATAAGGATCTTCTTCACCGTAAGTACTATGTGTCACTCTGTTCTTTTCTGATACTTGGAAGGGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0008808 GO:0009058 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010243 GO:0014070 GO:0016020 GO:0016740 GO:0016772 GO:0016780 GO:0019637 GO:0030145 GO:0030572 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032049 GO:0033993 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0046683 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0090407 GO:0097066 GO:0097068 GO:1901576 GO:1901698 GO:1901700 GO:1904386 GO:1905711

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

236

Amino Acids

25.88

Weight (kDa)

10.25

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	137 - 223	1.4e-21	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04870
fragaria_vesca	FvH4_3g02430
malus_domestica	MD10G1318100.v1.1
prunus_persica	Prupe.4G023700_v2.0.a1 Prupe.4G023700_v2.0.a1
pyrus_communis	pycom05g31260 pycom10g26960
rosa_chinensis	RchiOBHm_Chr5g0003681
rosa_laevigata	RLG00000031165
rosa_multiflora	Rmu_co7992166.1_g000001 Rmu_co8494381.1_g000001 Rmu_sc0028089.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072260
rosa_rugosa	Rorug04G0405800
rosa_samantha	Rh5AG032600 Rh5BG031200 Rh5CG035300
rosa_wichuraiana	Rw5G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	473
AasI	GACNNNNNNGTC	1 cut(s)	349
AccBSI	CCGCTC	2 cut(s)	190, 238
AccII	CGCG	1 cut(s)	249
AciI	CCGC	9 cut(s)	5, 66, 188, 206, 228, 236, 247, 249, 258
AclWI	GGATC	5 cut(s)	164, 378, 547, 584, 654
AfaI	GTAC	1 cut(s)	665
AfiI	CCNNNNNNNGG	5 cut(s)	173, 174, 210, 435, 458
AgeI	ACCGGT	1 cut(s)	378
AgsI	TTSAA	2 cut(s)	286, 385
AluBI	AGCT	3 cut(s)	57, 217, 281
AluI	AGCT	3 cut(s)	57, 217, 281
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	5 cut(s)	164, 378, 547, 584, 654
AoxI	GGCC	1 cut(s)	176
ApaI	GGGCCC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	491
AseI	ATTAAT	1 cut(s)	564
AsiGI	ACCGGT	1 cut(s)	378
AspS9I	GGNCC	5 cut(s)	15, 176, 177, 355, 449
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	3 cut(s)	55, 368, 647
AsuII	TTCGAA	1 cut(s)	34
AvaII	GGWCC	3 cut(s)	15, 355, 449
BaeGI	GKGCMC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	4 cut(s)	118, 456, 530, 628
BceAI	ACGGC	2 cut(s)	193, 245
BcgI	CGANNNNNNTGC	2 cut(s)	578, 612
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	549
BisI	GCNGC	3 cut(s)	236, 258, 492
BlsI	GCNGC	3 cut(s)	237, 259, 493
BmcAI	AGTACT	1 cut(s)	665
Bme1390I	CCNGG	1 cut(s)	349
Bme18I	GGWCC	3 cut(s)	15, 355, 449
BmgT120I	GGNCC	5 cut(s)	15, 176, 177, 355, 449
BmiI	GGNNCC	5 cut(s)	17, 178, 179, 357, 580
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	1 cut(s)	694
BpmI	CTGGAG	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	302
Bpu14I	TTCGAA	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	349
BsaJI	CCNNGG	3 cut(s)	172, 209, 247
BsaWI	WCCGGW	2 cut(s)	12, 378
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 174, 210, 435, 458
Bse118I	RCCGGY	2 cut(s)	378, 392
Bse1I	ACTGG	2 cut(s)	158, 533
Bse3DI	GCAATG	1 cut(s)	501
BseDI	CCNNGG	3 cut(s)	172, 209, 247
BseGI	GGATG	6 cut(s)	159, 467, 471, 541, 561, 709
BseLI	CCNNNNNNNGG	5 cut(s)	173, 174, 210, 435, 458
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	2 cut(s)	128, 316
BseNI	ACTGG	2 cut(s)	158, 533
BseRI	GAGGAG	4 cut(s)	76, 94, 125, 132
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	478
Bsh1236I	CGCG	1 cut(s)	249
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	178
BshTI	ACCGGT	1 cut(s)	378
BsiEI	CGRYCG	1 cut(s)	363
BsiSI	CCGG	4 cut(s)	13, 348, 379, 393
BslI	CCNNNNNNNGG	5 cut(s)	173, 174, 210, 435, 458
BsmAI	GTCTC	1 cut(s)	79
BsmBI	CGTCTC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	178
Bsp119I	TTCGAA	1 cut(s)	34
Bsp120I	GGGCCC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	8 cut(s)	156, 273, 370, 423, 441, 539, 589, 646
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	9 cut(s)	5, 66, 188, 206, 228, 236, 247, 249, 258
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	2 cut(s)	127, 315
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	5 cut(s)	17, 178, 179, 357, 580
BspPI	GGATC	5 cut(s)	164, 378, 547, 584, 654
BspQI	GCTCTTC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	34
BsrBI	CCGCTC	2 cut(s)	190, 238
BsrDI	GCAATG	1 cut(s)	501
BsrFI	RCCGGY	2 cut(s)	378, 392
BsrI	ACTGG	2 cut(s)	158, 533
BssAI	RCCGGY	2 cut(s)	378, 392
BssECI	CCNNGG	3 cut(s)	172, 209, 247
BssMI	GATC	8 cut(s)	156, 273, 370, 423, 441, 539, 589, 646
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	3 cut(s)	73, 364, 659
Bst6I	CTCTTC	3 cut(s)	197, 205, 308
BstBI	TTCGAA	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	2 cut(s)	114, 302
BstDSI	CCRYGG	3 cut(s)	172, 209, 247
BstF5I	GGATG	6 cut(s)	159, 467, 471, 541, 561, 709
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	8 cut(s)	159, 276, 373, 426, 444, 542, 592, 649
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	8 cut(s)	156, 273, 370, 423, 441, 539, 589, 646
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	347
BstSLI	GKGCMC	1 cut(s)	180
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	478
BstX2I	RGATCY	2 cut(s)	539, 646
BstYI	RGATCY	2 cut(s)	539, 646
BsuRI	GGCC	1 cut(s)	178
BtgI	CCRYGG	3 cut(s)	172, 209, 247
BtgZI	GCGATG	1 cut(s)	647
BtsCI	GGATG	6 cut(s)	159, 467, 471, 541, 561, 709
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	188
Cfr10I	RCCGGY	2 cut(s)	378, 392
Cfr13I	GGNCC	5 cut(s)	15, 176, 177, 355, 449
Cfr42I	CCGCGG	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	664
CspAI	ACCGGT	1 cut(s)	378
CviAII	CATG	3 cut(s)	173, 430, 708
CviJI	RGCY	8 cut(s)	57, 178, 217, 281, 439, 509, 548, 579
CviKI_1	RGCY	8 cut(s)	57, 178, 217, 281, 439, 509, 548, 579
CviQI	GTAC	1 cut(s)	664
DdeI	CTNAG	2 cut(s)	114, 302
DpnI	GATC	8 cut(s)	158, 275, 372, 425, 443, 541, 591, 648
DpnII	GATC	8 cut(s)	156, 273, 370, 423, 441, 539, 589, 646
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
Eam1104I	CTCTTC	3 cut(s)	197, 205, 308
EarI	CTCTTC	3 cut(s)	197, 205, 308
EciI	GGCGGA	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	180
Eco47I	GGWCC	3 cut(s)	15, 355, 449
EcoO109I	RGGNCCY	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	709
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	3 cut(s)	176, 433, 711
FaiI	YATR	6 cut(s)	174, 431, 473, 642, 669, 709
FatI	CATG	3 cut(s)	172, 429, 707
FauI	CCCGC	2 cut(s)	195, 213
Fnu4HI	GCNGC	3 cut(s)	236, 258, 492
FokI	GGATG	5 cut(s)	146, 474, 478, 548, 568
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	3 cut(s)	236, 258, 492
FspBI	CTAG	1 cut(s)	549
GluI	GCNGC	3 cut(s)	236, 258, 492
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	4 cut(s)	13, 348, 379, 393
Hin1II	CATG	3 cut(s)	176, 433, 711
HindIII	AAGCTT	2 cut(s)	55, 279
HinfI	GANTC	1 cut(s)	433
HpaII	CCGG	4 cut(s)	13, 348, 379, 393
HphI	GGTGA	3 cut(s)	55, 368, 647
Hpy188I	TCNGA	5 cut(s)	117, 337, 355, 370, 690
Hpy188III	TCNNGA	5 cut(s)	51, 123, 266, 304, 516
HpyAV	CCTTC	2 cut(s)	139, 693
HpyCH4III	ACNGT	3 cut(s)	73, 364, 659
HpyCH4V	TGCA	5 cut(s)	494, 599, 626, 640, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	2 cut(s)	114, 302
Hsp92II	CATG	3 cut(s)	176, 433, 711
KspI	CCGCGG	1 cut(s)	250
Kzo9I	GATC	8 cut(s)	156, 273, 370, 423, 441, 539, 589, 646
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	4 cut(s)	107, 243, 518, 584
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	1 cut(s)	694
MaeI	CTAG	1 cut(s)	549
MaeIII	GTNAC	3 cut(s)	374, 524, 672
MalI	GATC	8 cut(s)	158, 275, 372, 425, 443, 541, 591, 648
MbiI	CCGCTC	2 cut(s)	190, 238
MboI	GATC	8 cut(s)	156, 273, 370, 423, 441, 539, 589, 646
MboII	GAAGA	9 cut(s)	52, 184, 192, 319, 322, 325, 571, 641, 644
MflI	RGATCY	2 cut(s)	539, 646
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	5 cut(s)	30, 338, 409, 418, 565
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	4 cut(s)	174, 333, 348, 513
Mph1103I	ATGCAT	1 cut(s)	709
MseI	TTAA	2 cut(s)	291, 564
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	4 cut(s)	13, 348, 379, 393
MspR9I	CCNGG	1 cut(s)	349
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	214
NciI	CCSGG	1 cut(s)	349
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	8 cut(s)	156, 273, 370, 423, 441, 539, 589, 646
NlaIII	CATG	3 cut(s)	176, 433, 711
NlaIV	GGNNCC	5 cut(s)	17, 178, 179, 357, 580
NmeAIII	GCCGAG	1 cut(s)	415
NmuCI	GTSAC	3 cut(s)	374, 524, 672
NsiI	ATGCAT	1 cut(s)	709
NspV	TTCGAA	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PflFI	GACNNNGTC	1 cut(s)	364
PinAI	ACCGGT	1 cut(s)	378
PkrI	GCNGC	3 cut(s)	237, 259, 493
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PshBI	ATTAAT	1 cut(s)	564
PsiI	TTATAA	1 cut(s)	473
PspN4I	GGNNCC	5 cut(s)	17, 178, 179, 357, 580
PspOMI	GGGCCC	1 cut(s)	176
PspPI	GGNCC	5 cut(s)	15, 176, 177, 355, 449
PsuI	RGATCY	2 cut(s)	539, 646
PsyI	GACNNNGTC	1 cut(s)	364
RsaI	GTAC	1 cut(s)	665
RsaNI	GTAC	1 cut(s)	664
SacII	CCGCGG	1 cut(s)	250
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	291, 564
SatI	GCNGC	3 cut(s)	236, 258, 492
Sau3AI	GATC	8 cut(s)	156, 273, 370, 423, 441, 539, 589, 646
Sau96I	GGNCC	5 cut(s)	15, 176, 177, 355, 449
ScaI	AGTACT	1 cut(s)	665
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	1 cut(s)	180
SfaNI	GCATC	1 cut(s)	694
Sfr303I	CCGCGG	1 cut(s)	250
SfuI	TTCGAA	1 cut(s)	34
SgrAI	CRCCGGYG	1 cut(s)	392
SgrBI	CCGCGG	1 cut(s)	250
SinI	GGWCC	3 cut(s)	15, 355, 449
Sse9I	AATT	5 cut(s)	30, 338, 409, 418, 565
SsiI	CCGC	9 cut(s)	5, 66, 188, 206, 228, 236, 247, 249, 258
SspMI	CTAG	1 cut(s)	549
StyD4I	CCNGG	1 cut(s)	347
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	3 cut(s)	73, 364, 659
TaqI	TCGA	3 cut(s)	34, 276, 588
TasI	AATT	5 cut(s)	30, 338, 409, 418, 565
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	2 cut(s)	238, 260
Tru1I	TTAA	2 cut(s)	291, 564
Tru9I	TTAA	2 cut(s)	291, 564
TscAI	CASTG	1 cut(s)	188
TseFI	GTSAC	3 cut(s)	374, 524, 672
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	3 cut(s)	374, 524, 672
TspDTI	ATGAA	1 cut(s)	572
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	188
Tth111I	GACNNNGTC	1 cut(s)	364
VpaK11BI	GGWCC	3 cut(s)	15, 355, 449
VspI	ATTAAT	1 cut(s)	564
XspI	CTAG	1 cut(s)	549
ZrmI	AGTACT	1 cut(s)	665
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.