Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0012905

Physical Location & Seq

Genomic Coordinates Reverse (-)

2202712 .. 2206751

Gene Structure 4040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG031200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCGGGTTTCCGGTCCCTGAAATCCCTAATTCGAAACCCTAAAAAATCCAGAAGCTTCTTCACCGCCACCGTCTCCCCATTCTCCTCCCCTACCTCTCGCTCCTCCCCATCTCACATTTCCAGAACCTTCCTCCTCTCTCCTCTCTCCAACTGGATCATCCTCCTCCCCTCCCGTGGGCCCCACTGCCCATTCTTCCTCTCTTCCCCGCCGTGGAAGCTCTCCCAGTCCGCCACTCCGCTCCACCTCCGCGGAAACGCCGCCGTTTTGGAAAAGATCGAAGCTTTGAACTTTAACAATCTGCTGAGGAAGAAGAAGAAGAAGACCGCCCCTCCGCCCGAATTGACCTCCGGGTCGGATCCGACCGTGTCGGATCGTCACCGGTTGAAAGTCGCCGGGGGCGATTTCGTCAATTTGCCTAATTTGATCTCCATGACTCGGCTCATCTCTGGTCCTTTTCTTGGATGGATGATTGTAAATGAGTGGTATTCTGCTGCAATGGTGGGGTTGGCTGTGTCTGGAGCAAGTGACTGGTTGGATGGATATGTGGCTAGGAGGATGAAGATTAATTCTGTTGTTGGCTCCTACCTCGATCCCCTTGCAGATAAGGTTCTTATTGGGTGTGTTGCATTGGCGATGGTGCATAAGGATCTTCTTCACCCTGGTCTTGTTGGAATCATTGTGTTGCGAGATGTTGGCCTCGTTGGTGGTGCAGTGTATCAAAGAGCTAGTAGCTTGGGGTGGAAGGTGAGAACTTTTTGTTCCCCGTATCAATATTTGGCCAGAAATTCTTGGTTTCTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0008808 GO:0009058 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010243 GO:0014070 GO:0016020 GO:0016740 GO:0016772 GO:0016780 GO:0019637 GO:0030145 GO:0030572 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032049 GO:0033993 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0046683 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0090407 GO:0097066 GO:0097068 GO:1901576 GO:1901698 GO:1901700 GO:1904386 GO:1905711

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

268

Amino Acids

29.47

Weight (kDa)

10.37

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	138 - 241	2.4e-24	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04870
fragaria_vesca	FvH4_3g02430
malus_domestica	MD10G1318100.v1.1
prunus_persica	Prupe.4G023700_v2.0.a1 Prupe.4G023700_v2.0.a1
pyrus_communis	pycom05g31260 pycom10g26960
rosa_chinensis	RchiOBHm_Chr5g0003681
rosa_laevigata	RLG00000031165
rosa_multiflora	Rmu_co7992166.1_g000001 Rmu_co8494381.1_g000001 Rmu_sc0028089.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072260
rosa_rugosa	Rorug04G0405800
rosa_samantha	Rh5AG032600 Rh5BG031200 Rh5CG035300
rosa_wichuraiana	Rw5G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	352
AccBSI	CCGCTC	1 cut(s)	241
AccII	CGCG	1 cut(s)	252
AclWI	GGATC	6 cut(s)	164, 353, 366, 381, 587, 657
AcoI	YGGCCR	1 cut(s)	780
AcsI	RAATTY	1 cut(s)	787
AfiI	CCNNNNNNNGG	5 cut(s)	176, 177, 213, 438, 461
AgeI	ACCGGT	1 cut(s)	381
AgsI	TTSAA	2 cut(s)	289, 388
AjnI	CCWGG	1 cut(s)	661
AluBI	AGCT	5 cut(s)	57, 220, 284, 728, 735
AluI	AGCT	5 cut(s)	57, 220, 284, 728, 735
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	6 cut(s)	164, 353, 366, 381, 587, 657
AoxI	GGCC	3 cut(s)	179, 697, 780
ApaI	GGGCCC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	1 cut(s)	787
AseI	ATTAAT	1 cut(s)	567
AsiGI	ACCGGT	1 cut(s)	381
AspS9I	GGNCC	4 cut(s)	15, 179, 180, 452
AsuC2I	CCSGG	2 cut(s)	352, 397
AsuHPI	GGTGA	4 cut(s)	55, 371, 650, 760
AsuII	TTCGAA	1 cut(s)	34
AvaII	GGWCC	2 cut(s)	15, 452
BaeGI	GKGCMC	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	782
BamHI	GGATCC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	329
BbvCI	CCTCAGC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	4 cut(s)	118, 459, 533, 631
BceAI	ACGGC	2 cut(s)	196, 248
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BciT130I	CCWGG	1 cut(s)	663
BcnI	CCSGG	2 cut(s)	352, 397
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	2 cut(s)	552, 729
BisI	GCNGC	2 cut(s)	261, 495
BlsI	GCNGC	2 cut(s)	262, 496
Bme1390I	CCNGG	3 cut(s)	352, 397, 663
Bme18I	GGWCC	2 cut(s)	15, 452
BmgT120I	GGNCC	4 cut(s)	15, 179, 180, 452
BmiI	GGNNCC	5 cut(s)	17, 181, 182, 360, 583
BmrFI	CCNGG	3 cut(s)	352, 397, 663
BmrI	ACTGGG	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	540
Bpu10I	CCTNAGC	1 cut(s)	305
Bpu14I	TTCGAA	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	352, 397
BsaJI	CCNNGG	5 cut(s)	175, 212, 250, 396, 661
BsaWI	WCCGGW	2 cut(s)	12, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bsc4I	CCNNNNNNNGG	5 cut(s)	176, 177, 213, 438, 461
Bse118I	RCCGGY	1 cut(s)	381
Bse1I	ACTGG	3 cut(s)	158, 226, 536
Bse3DI	GCAATG	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	5 cut(s)	175, 212, 250, 396, 661
BseGI	GGATG	5 cut(s)	159, 470, 474, 544, 564
BseLI	CCNNNNNNNGG	5 cut(s)	176, 177, 213, 438, 461
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	3 cut(s)	158, 226, 536
BseRI	GAGGAG	5 cut(s)	76, 94, 125, 132, 155
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	481
BsgI	GTGCAG	1 cut(s)	732
Bsh1236I	CGCG	1 cut(s)	252
Bsh1285I	CGRYCG	1 cut(s)	366
BshFI	GGCC	3 cut(s)	181, 699, 782
BshTI	ACCGGT	1 cut(s)	381
BsiEI	CGRYCG	1 cut(s)	366
BsiSI	CCGG	4 cut(s)	13, 351, 382, 396
BslI	CCNNNNNNNGG	5 cut(s)	176, 177, 213, 438, 461
BsmAI	GTCTC	1 cut(s)	79
BsmBI	CGTCTC	1 cut(s)	79
BsnI	GGCC	3 cut(s)	181, 699, 782
Bsp119I	TTCGAA	1 cut(s)	34
Bsp120I	GGGCCC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	7 cut(s)	156, 276, 358, 373, 426, 592, 649
BspANI	GGCC	3 cut(s)	181, 699, 782
BspCNI	CTCAG	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	5 cut(s)	17, 181, 182, 360, 583
BspPI	GGATC	6 cut(s)	164, 353, 366, 381, 587, 657
BspT104I	TTCGAA	1 cut(s)	34
BsrBI	CCGCTC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	504
BsrFI	RCCGGY	1 cut(s)	381
BsrI	ACTGG	3 cut(s)	158, 226, 536
BssAI	RCCGGY	1 cut(s)	381
BssECI	CCNNGG	5 cut(s)	175, 212, 250, 396, 661
BssMI	GATC	7 cut(s)	156, 276, 358, 373, 426, 592, 649
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	2 cut(s)	73, 367
Bst6I	CTCTTC	1 cut(s)	208
BstBI	TTCGAA	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	305
BstDSI	CCRYGG	3 cut(s)	175, 212, 250
BstF5I	GGATG	5 cut(s)	159, 470, 474, 544, 564
BstFNI	CGCG	1 cut(s)	252
BstKTI	GATC	7 cut(s)	159, 279, 361, 376, 429, 595, 652
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	7 cut(s)	156, 276, 358, 373, 426, 592, 649
BstMCI	CGRYCG	1 cut(s)	366
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	663
BstSCI	CCNGG	3 cut(s)	350, 395, 661
BstSLI	GKGCMC	1 cut(s)	183
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	481
BstV2I	GAAGAC	1 cut(s)	329
BstX2I	RGATCY	2 cut(s)	358, 649
BstYI	RGATCY	2 cut(s)	358, 649
BsuRI	GGCC	3 cut(s)	181, 699, 782
BtgI	CCRYGG	3 cut(s)	175, 212, 250
BtgZI	GCGATG	1 cut(s)	650
BtsCI	GGATG	5 cut(s)	159, 470, 474, 544, 564
BtsI	GCAGTG	2 cut(s)	184, 720
BtsIMutI	CAGTG	2 cut(s)	184, 720
Cfr10I	RCCGGY	1 cut(s)	381
Cfr13I	GGNCC	4 cut(s)	15, 179, 180, 452
Cfr42I	CCGCGG	1 cut(s)	253
CspAI	ACCGGT	1 cut(s)	381
CviAII	CATG	1 cut(s)	433
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	7 cut(s)	158, 278, 360, 375, 428, 594, 651
DpnII	GATC	7 cut(s)	156, 276, 358, 373, 426, 592, 649
DrdI	GACNNNNNNGTC	1 cut(s)	352
DseDI	GACNNNNNNGTC	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	780
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
EciI	GGCGGA	2 cut(s)	220, 324
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	15, 452
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	661
EcoT38I	GRGCYC	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	1 cut(s)	436
FaiI	YATR	3 cut(s)	434, 546, 645
FatI	CATG	1 cut(s)	432
FauI	CCCGC	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	261, 495
FokI	GGATG	5 cut(s)	146, 477, 481, 551, 571
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	261, 495
FspBI	CTAG	2 cut(s)	552, 729
GluI	GCNGC	2 cut(s)	261, 495
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	3 cut(s)	181, 699, 782
HapII	CCGG	4 cut(s)	13, 351, 382, 396
Hin1II	CATG	1 cut(s)	436
HindIII	AAGCTT	2 cut(s)	55, 282
HinfI	GANTC	2 cut(s)	436, 675
HpaII	CCGG	4 cut(s)	13, 351, 382, 396
HphI	GGTGA	4 cut(s)	55, 371, 650, 760
Hpy188I	TCNGA	3 cut(s)	358, 363, 373
Hpy188III	TCNNGA	3 cut(s)	51, 123, 519
HpyAV	CCTTC	2 cut(s)	139, 739
HpyCH4III	ACNGT	2 cut(s)	73, 367
HpyCH4V	TGCA	5 cut(s)	497, 602, 629, 643, 713
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	1 cut(s)	305
Hsp92II	CATG	1 cut(s)	436
KspI	CCGCGG	1 cut(s)	253
Kzo9I	GATC	7 cut(s)	156, 276, 358, 373, 426, 592, 649
LmnI	GCTCC	4 cut(s)	107, 246, 521, 587
Lsp1109I	GCAGC	1 cut(s)	481
MaeI	CTAG	2 cut(s)	552, 729
MaeIII	GTNAC	2 cut(s)	377, 527
MalI	GATC	7 cut(s)	158, 278, 360, 375, 428, 594, 651
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	7 cut(s)	156, 276, 358, 373, 426, 592, 649
MflI	RGATCY	2 cut(s)	358, 649
MhlI	GDGCHC	1 cut(s)	183
MlsI	TGGCCA	1 cut(s)	782
MluCI	AATT	6 cut(s)	30, 341, 412, 421, 568, 787
MluNI	TGGCCA	1 cut(s)	782
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	6 cut(s)	174, 336, 351, 386, 516, 652
Mox20I	TGGCCA	1 cut(s)	782
MscI	TGGCCA	1 cut(s)	782
MseI	TTAA	2 cut(s)	294, 567
Msp20I	TGGCCA	1 cut(s)	782
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	4 cut(s)	13, 351, 382, 396
MspR9I	CCNGG	3 cut(s)	352, 397, 663
MvaI	CCWGG	1 cut(s)	663
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	217
NciI	CCSGG	2 cut(s)	352, 397
NdeII	GATC	7 cut(s)	156, 276, 358, 373, 426, 592, 649
NlaIII	CATG	1 cut(s)	436
NlaIV	GGNNCC	5 cut(s)	17, 181, 182, 360, 583
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	2 cut(s)	377, 527
NspV	TTCGAA	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	675
PflFI	GACNNNGTC	1 cut(s)	367
PinAI	ACCGGT	1 cut(s)	381
PkrI	GCNGC	2 cut(s)	262, 496
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PshBI	ATTAAT	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	5 cut(s)	17, 181, 182, 360, 583
PspOMI	GGGCCC	1 cut(s)	179
PspPI	GGNCC	4 cut(s)	15, 179, 180, 452
PsuI	RGATCY	2 cut(s)	358, 649
PsyI	GACNNNGTC	1 cut(s)	367
SacII	CCGCGG	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	294, 567
SatI	GCNGC	2 cut(s)	261, 495
Sau3AI	GATC	7 cut(s)	156, 276, 358, 373, 426, 592, 649
Sau96I	GGNCC	4 cut(s)	15, 179, 180, 452
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	3 cut(s)	352, 397, 663
SduI	GDGCHC	1 cut(s)	183
Sfr303I	CCGCGG	1 cut(s)	253
SfuI	TTCGAA	1 cut(s)	34
SgrBI	CCGCGG	1 cut(s)	253
SinI	GGWCC	2 cut(s)	15, 452
Sse9I	AATT	6 cut(s)	30, 341, 412, 421, 568, 787
SspI	AATATT	1 cut(s)	776
SspMI	CTAG	2 cut(s)	552, 729
StyD4I	CCNGG	3 cut(s)	350, 395, 661
TaaI	ACNGT	2 cut(s)	73, 367
TaqI	TCGA	3 cut(s)	34, 279, 591
TasI	AATT	6 cut(s)	30, 341, 412, 421, 568, 787
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	675
Tru1I	TTAA	2 cut(s)	294, 567
Tru9I	TTAA	2 cut(s)	294, 567
TscAI	CASTG	2 cut(s)	191, 720
TseFI	GTSAC	2 cut(s)	377, 527
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	2 cut(s)	377, 527
TspDTI	ATGAA	1 cut(s)	575
TspRI	CASTG	2 cut(s)	191, 720
Tth111I	GACNNNGTC	1 cut(s)	367
VpaK11BI	GGWCC	2 cut(s)	15, 452
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	1 cut(s)	787
XspI	CTAG	2 cut(s)	552, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.