Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012905

Physical Location & Seq

Genomic Coordinates Forward (+)

28091547 .. 28093565

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g26960.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCGGTCTTCCGGTCCCTGAAAGCCCTAATCCAAAACCCTAAGAAATCATCCAGAGCCTTCCTCACCGCCACCGCTTCCTCCTCCTCCATCTCCGCCCCTCTTCACTACTCTCCTCTCTCCTACCCTCTCTCTTACCCCCTCTTCCGATTGCCGTCTCAGATTTCCAGGACCTTCCTCTCTCCGCTCTCCAATTGGATCGTTCCTTTTCACGGACCGCTCTTCCTCTCCTGCCCTCCATGGAAGCTCTCGCAGTCCTCCACTCCGCTCTACCTCGGCGGAAACGGCGTCGTCCTCAGAAAGATCGAAGCTTCATTGCACTTGAACCTGCTAAGGAGGAGACCGAGCTTCTCGCTCCCATTGGAGGTTGGGTCACTCTCGCCGGCTCCGACGGTGGTGGATCGCGGTGTCGGGTTGAAAGATGTCAGTGACGATTTCGTCAATTTGCCCAATATGATCTCCATGAGTCGGTTGATTTCGGGTCCTTTGCTTGGATGGATGATCACAAATGAATGGTACTCTTCTGCAATGGTGGGATTGGCAGTCTCTGGGGCAAGTGACTGGTTGGATGGATACATGGCTAGGAGGATGAAGATCAATTCTGTTGTTGGGTCCTATCTGGATCCCCTTGCTGATAAGGTTCTTATAGGATGCGTTGCTTTGGCCTTGGTGCATAAGGGTCTTCTTCACCCTGGACTGGTTGGACTCATTGTGTTCCGGGATGTTGGCCTTGTTGGTGGTGCAGTTTATCAAAGAGCTAGTAGCTTGGGGTGGAAGTGGAATAGTTGGTCCGACTTTTTCAACCTTGATGGAACCCGTCCCGAGAAGGTCGAACCGCTCTTTATTAGTAAGCTTAACACGGTCTTCCAGTTGATTTTAGTAGCGGCAGTTCTCCTTCAACCAGAGTTTGGAACGCAAGAAACTCAGTCGTACATTAAATACTTGAGTTGGTTAGTTGCATCAACAACAGTGGCTTCCACAGCAGCGTACGGGGCACAACACTTGGGGAGATCTGCATTGACCGCTCGGAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0008808 GO:0009058 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010243 GO:0014070 GO:0016020 GO:0016740 GO:0016772 GO:0016780 GO:0019637 GO:0030145 GO:0030572 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032049 GO:0033993 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0046683 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0090407 GO:0097066 GO:0097068 GO:1901576 GO:1901698 GO:1901700 GO:1904386 GO:1905711

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

346

Amino Acids

37.61

Weight (kDa)

9.83

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04870
fragaria_vesca	FvH4_3g02430
malus_domestica	MD10G1318100.v1.1
prunus_persica	Prupe.4G023700_v2.0.a1 Prupe.4G023700_v2.0.a1
pyrus_communis	pycom05g31260 pycom10g26960
rosa_chinensis	RchiOBHm_Chr5g0003681
rosa_laevigata	RLG00000031165
rosa_multiflora	Rmu_co7992166.1_g000001 Rmu_co8494381.1_g000001 Rmu_sc0028089.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072260
rosa_rugosa	Rorug04G0405800
rosa_samantha	Rh5AG032600 Rh5BG031200 Rh5CG035300
rosa_wichuraiana	Rw5G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
Acc36I	ACCTGC	1 cut(s)	336
AccB7I	CCANNNNNTGG	1 cut(s)	908
AccBSI	CCGCTC	5 cut(s)	187, 220, 268, 838, 1025
AccII	CGCG	1 cut(s)	405
AclWI	GGATC	4 cut(s)	206, 408, 617, 630
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	3 cut(s)	518, 932, 989
AfiI	CCNNNNNNNGG	6 cut(s)	212, 364, 468, 491, 697, 908
AgsI	TTSAA	4 cut(s)	325, 418, 802, 899
AjnI	CCWGG	2 cut(s)	167, 691
AluBI	AGCT	6 cut(s)	247, 311, 348, 758, 765, 853
AluI	AGCT	6 cut(s)	247, 311, 348, 758, 765, 853
Alw26I	GTCTC	3 cut(s)	162, 334, 550
AlwI	GGATC	4 cut(s)	206, 408, 617, 630
AlwNI	CAGNNNCTG	1 cut(s)	548
Ama87I	CYCGRG	1 cut(s)	821
AoxI	GGCC	2 cut(s)	663, 727
ApeKI	GCWGC	1 cut(s)	983
AspS9I	GGNCC	6 cut(s)	15, 171, 215, 482, 612, 789
AsuC2I	CCSGG	1 cut(s)	719
AsuHPI	GGTGA	2 cut(s)	58, 680
AvaI	CYCGRG	1 cut(s)	821
AvaII	GGWCC	6 cut(s)	15, 171, 215, 482, 612, 789
BaeGI	GKGCMC	1 cut(s)	997
BamHI	GGATCC	1 cut(s)	622
BbsI	GAAGAC	2 cut(s)	674, 856
BbvI	GCAGC	1 cut(s)	995
BccI	CCATC	4 cut(s)	98, 489, 563, 803
BceAI	ACGGC	2 cut(s)	139, 301
BciT130I	CCWGG	2 cut(s)	169, 693
BciVI	GTATCC	1 cut(s)	566
BclI	TGATCA	1 cut(s)	501
BcnI	CCSGG	1 cut(s)	719
BcoDI	GTCTC	3 cut(s)	162, 334, 550
BfaI	CTAG	2 cut(s)	582, 759
BfuAI	ACCTGC	1 cut(s)	336
BfuI	GTATCC	1 cut(s)	566
BglII	AGATCT	1 cut(s)	1010
BisI	GCNGC	2 cut(s)	885, 984
BlsI	GCNGC	2 cut(s)	886, 985
Bme1390I	CCNGG	3 cut(s)	169, 693, 719
Bme18I	GGWCC	6 cut(s)	15, 171, 215, 482, 612, 789
BmeT110I	CYCGRG	1 cut(s)	821
BmgT120I	GGNCC	6 cut(s)	15, 171, 215, 482, 612, 789
BmiI	GGNNCC	6 cut(s)	17, 387, 483, 613, 624, 814
BmrFI	CCNGG	3 cut(s)	169, 693, 719
BmsI	GCATC	2 cut(s)	641, 968
BpiI	GAAGAC	2 cut(s)	674, 856
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
Bpu10I	CCTNAGC	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	964
BpuMI	CCSGG	1 cut(s)	719
BsaBI	GATNNNNATC	1 cut(s)	593
BsaHI	GRCGYC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	4 cut(s)	239, 274, 666, 691
BsaWI	WCCGGW	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bsc4I	CCNNNNNNNGG	6 cut(s)	212, 364, 468, 491, 697, 908
Bse118I	RCCGGY	1 cut(s)	382
Bse1I	ACTGG	3 cut(s)	566, 702, 868
Bse3DI	GCAATG	2 cut(s)	314, 534
Bse8I	GATNNNNATC	1 cut(s)	593
BseBI	CCWGG	2 cut(s)	169, 693
BseDI	CCNNGG	4 cut(s)	239, 274, 666, 691
BseGI	GGATG	7 cut(s)	50, 500, 504, 574, 594, 656, 727
BseJI	GATNNNNATC	1 cut(s)	593
BseLI	CCNNNNNNNGG	6 cut(s)	212, 364, 468, 491, 697, 908
BseMI	GCAATG	2 cut(s)	314, 534
BseMII	CTCAG	3 cut(s)	173, 310, 938
BseNI	ACTGG	3 cut(s)	566, 702, 868
BseRI	GAGGAG	4 cut(s)	73, 76, 105, 352
BseSI	GKGCMC	1 cut(s)	997
BseXI	GCAGC	1 cut(s)	995
BsgI	GTGCAG	1 cut(s)	762
Bsh1236I	CGCG	1 cut(s)	405
BshFI	GGCC	2 cut(s)	665, 729
BsiHKCI	CYCGRG	1 cut(s)	821
BsiSI	CCGG	3 cut(s)	13, 383, 718
BsiWI	CGTACG	1 cut(s)	987
BslFI	GGGAC	1 cut(s)	804
BslI	CCNNNNNNNGG	6 cut(s)	212, 364, 468, 491, 697, 908
BsmAI	GTCTC	3 cut(s)	162, 334, 550
BsmBI	CGTCTC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	804
BsnI	GGCC	2 cut(s)	665, 729
Bso31I	GGTCTC	1 cut(s)	334
BsoBI	CYCGRG	1 cut(s)	821
Bsp1286I	GDGCHC	1 cut(s)	997
Bsp143I	GATC	8 cut(s)	198, 303, 400, 456, 501, 594, 622, 1010
Bsp19I	CCATGG	1 cut(s)	239
BspANI	GGCC	2 cut(s)	665, 729
BspCNI	CTCAG	3 cut(s)	172, 309, 937
BspFNI	CGCG	1 cut(s)	405
BspLI	GGNNCC	6 cut(s)	17, 387, 483, 613, 624, 814
BspMI	ACCTGC	1 cut(s)	336
BspPI	GGATC	4 cut(s)	206, 408, 617, 630
BspQI	GCTCTTC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	334
BsrBI	CCGCTC	5 cut(s)	187, 220, 268, 838, 1025
BsrDI	GCAATG	2 cut(s)	314, 534
BsrFI	RCCGGY	1 cut(s)	382
BsrI	ACTGG	3 cut(s)	566, 702, 868
BssAI	RCCGGY	1 cut(s)	382
BssECI	CCNNGG	4 cut(s)	239, 274, 666, 691
BssMI	GATC	8 cut(s)	198, 303, 400, 456, 501, 594, 622, 1010
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	2 cut(s)	239, 666
Bst2UI	CCWGG	2 cut(s)	169, 693
Bst4CI	ACNGT	3 cut(s)	394, 862, 970
Bst6I	CTCTTC	4 cut(s)	108, 149, 227, 526
BstACI	GRCGYC	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	5 cut(s)	42, 159, 296, 332, 924
BstDSI	CCRYGG	1 cut(s)	239
BstF5I	GGATG	7 cut(s)	50, 500, 504, 574, 594, 656, 727
BstFNI	CGCG	1 cut(s)	405
BstKTI	GATC	8 cut(s)	201, 306, 403, 459, 504, 597, 625, 1013
BstMAI	GTCTC	3 cut(s)	162, 334, 550
BstMBI	GATC	8 cut(s)	198, 303, 400, 456, 501, 594, 622, 1010
BstMWI	GCNNNNNNNGC	4 cut(s)	285, 980, 992, 1022
BstNI	CCWGG	2 cut(s)	169, 693
BstSCI	CCNGG	3 cut(s)	167, 691, 717
BstSLI	GKGCMC	1 cut(s)	997
BstUI	CGCG	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	995
BstV2I	GAAGAC	2 cut(s)	674, 856
BstX2I	RGATCY	2 cut(s)	622, 1010
BstYI	RGATCY	2 cut(s)	622, 1010
BsuI	GTATCC	1 cut(s)	566
BsuRI	GGCC	2 cut(s)	665, 729
BtgI	CCRYGG	1 cut(s)	239
BtsCI	GGATG	7 cut(s)	50, 500, 504, 574, 594, 656, 727
BtsIMutI	CAGTG	2 cut(s)	433, 975
BveI	ACCTGC	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	384
CaiI	CAGNNNCTG	1 cut(s)	548
Cfr10I	RCCGGY	1 cut(s)	382
Cfr13I	GGNCC	6 cut(s)	15, 171, 215, 482, 612, 789
CpoI	CGGWCCG	1 cut(s)	215
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	3 cut(s)	517, 931, 988
CspCI	CAANNNNNGTGG	2 cut(s)	951, 986
CspI	CGGWCCG	1 cut(s)	215
CviAII	CATG	3 cut(s)	240, 463, 577
CviQI	GTAC	3 cut(s)	517, 931, 988
DdeI	CTNAG	5 cut(s)	42, 159, 296, 332, 924
DpnI	GATC	8 cut(s)	200, 305, 402, 458, 503, 596, 624, 1012
DpnII	GATC	8 cut(s)	198, 303, 400, 456, 501, 594, 622, 1010
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
Eam1104I	CTCTTC	4 cut(s)	108, 149, 227, 526
EarI	CTCTTC	4 cut(s)	108, 149, 227, 526
EciI	GGCGGA	2 cut(s)	85, 294
Eco130I	CCWWGG	2 cut(s)	239, 666
Eco31I	GGTCTC	1 cut(s)	334
Eco47I	GGWCC	6 cut(s)	15, 171, 215, 482, 612, 789
Eco88I	CYCGRG	1 cut(s)	821
EcoO109I	RGGNCCY	3 cut(s)	171, 482, 612
EcoRII	CCWGG	2 cut(s)	167, 691
EcoT14I	CCWWGG	2 cut(s)	239, 666
ErhI	CCWWGG	2 cut(s)	239, 666
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	3 cut(s)	243, 466, 580
FaiI	YATR	6 cut(s)	241, 455, 464, 578, 647, 675
FaqI	GGGAC	1 cut(s)	804
FatI	CATG	3 cut(s)	239, 462, 576
FbaI	TGATCA	1 cut(s)	501
Fnu4HI	GCNGC	2 cut(s)	885, 984
FokI	GGATG	7 cut(s)	37, 507, 511, 581, 601, 663, 734
Fsp4HI	GCNGC	2 cut(s)	885, 984
FspBI	CTAG	2 cut(s)	582, 759
GluI	GCNGC	2 cut(s)	885, 984
HaeIII	GGCC	2 cut(s)	665, 729
HapII	CCGG	3 cut(s)	13, 383, 718
HgaI	GACGC	1 cut(s)	277
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	3 cut(s)	243, 466, 580
HindIII	AAGCTT	2 cut(s)	309, 851
HinfI	GANTC	2 cut(s)	466, 705
HpaII	CCGG	3 cut(s)	13, 383, 718
HphI	GGTGA	2 cut(s)	58, 680
Hpy188I	TCNGA	6 cut(s)	149, 162, 299, 390, 793, 1029
Hpy188III	TCNNGA	3 cut(s)	54, 620, 821
Hpy99I	CGWCG	2 cut(s)	293, 394
HpyAV	CCTTC	4 cut(s)	70, 184, 820, 905
HpyCH4III	ACNGT	3 cut(s)	394, 862, 970
HpyCH4V	TGCA	6 cut(s)	319, 527, 673, 743, 959, 1016
HpyF10VI	GCNNNNNNNGC	4 cut(s)	285, 980, 992, 1022
HpyF3I	CTNAG	5 cut(s)	42, 159, 296, 332, 924
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	243, 466, 580
KroI	GCCGGC	1 cut(s)	382
KroNI	GCCGGC	1 cut(s)	384
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	8 cut(s)	198, 303, 400, 456, 501, 594, 622, 1010
LguI	GCTCTTC	1 cut(s)	227
LmnI	GCTCC	2 cut(s)	360, 391
Lsp1109I	GCAGC	1 cut(s)	995
LweI	GCATC	2 cut(s)	641, 968
MaeI	CTAG	2 cut(s)	582, 759
MaeIII	GTNAC	3 cut(s)	372, 428, 557
MalI	GATC	8 cut(s)	200, 305, 402, 458, 503, 596, 624, 1012
MbiI	CCGCTC	5 cut(s)	187, 220, 268, 838, 1025
MboI	GATC	8 cut(s)	198, 303, 400, 456, 501, 594, 622, 1010
MboII	GAAGA	8 cut(s)	95, 136, 214, 513, 604, 674, 677, 856
MfeI	CAATTG	1 cut(s)	193
MflI	RGATCY	2 cut(s)	622, 1010
MhlI	GDGCHC	1 cut(s)	997
MluCI	AATT	3 cut(s)	193, 442, 598
MlyI	GAGTC	2 cut(s)	475, 699
MmeI	TCCRAC	4 cut(s)	413, 546, 682, 816
MroNI	GCCGGC	1 cut(s)	382
MseI	TTAA	2 cut(s)	855, 936
MspI	CCGG	3 cut(s)	13, 383, 718
MspR9I	CCNGG	3 cut(s)	169, 693, 719
MunI	CAATTG	1 cut(s)	193
MvaI	CCWGG	2 cut(s)	169, 693
MvnI	CGCG	1 cut(s)	405
MwoI	GCNNNNNNNGC	4 cut(s)	285, 980, 992, 1022
NaeI	GCCGGC	1 cut(s)	384
NciI	CCSGG	1 cut(s)	719
NcoI	CCATGG	1 cut(s)	239
NdeII	GATC	8 cut(s)	198, 303, 400, 456, 501, 594, 622, 1010
NgoMIV	GCCGGC	1 cut(s)	382
NlaIII	CATG	3 cut(s)	243, 466, 580
NlaIV	GGNNCC	6 cut(s)	17, 387, 483, 613, 624, 814
NmeAIII	GCCGAG	1 cut(s)	255
NmuCI	GTSAC	3 cut(s)	372, 428, 557
PciSI	GCTCTTC	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	386
PdiI	GCCGGC	1 cut(s)	384
Pfl23II	CGTACG	1 cut(s)	987
PflMI	CCANNNNNTGG	1 cut(s)	908
PfoI	TCCNGGA	2 cut(s)	167, 717
PkrI	GCNGC	2 cut(s)	886, 985
PleI	GAGTC	2 cut(s)	474, 699
PpsI	GAGTC	2 cut(s)	474, 699
PpuMI	RGGWCCY	3 cut(s)	171, 482, 612
Psp5II	RGGWCCY	3 cut(s)	171, 482, 612
Psp6I	CCWGG	2 cut(s)	167, 691
PspGI	CCWGG	2 cut(s)	167, 691
PspLI	CGTACG	1 cut(s)	987
PspN4I	GGNNCC	6 cut(s)	17, 387, 483, 613, 624, 814
PspPI	GGNCC	6 cut(s)	15, 171, 215, 482, 612, 789
PspPPI	RGGWCCY	3 cut(s)	171, 482, 612
PsrI	GAACNNNNNNTAC	2 cut(s)	873, 905
PstNI	CAGNNNCTG	1 cut(s)	548
PsuI	RGATCY	2 cut(s)	622, 1010
RsaI	GTAC	3 cut(s)	518, 932, 989
RsaNI	GTAC	3 cut(s)	517, 931, 988
Rsr2I	CGGWCCG	1 cut(s)	215
RsrII	CGGWCCG	1 cut(s)	215
SapI	GCTCTTC	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	855, 936
SatI	GCNGC	2 cut(s)	885, 984
Sau3AI	GATC	8 cut(s)	198, 303, 400, 456, 501, 594, 622, 1010
Sau96I	GGNCC	6 cut(s)	15, 171, 215, 482, 612, 789
SchI	GAGTC	2 cut(s)	475, 699
ScrFI	CCNGG	3 cut(s)	169, 693, 719
SduI	GDGCHC	1 cut(s)	997
SfaNI	GCATC	2 cut(s)	641, 968
SinI	GGWCC	6 cut(s)	15, 171, 215, 482, 612, 789
SmlI	CTYRAG	1 cut(s)	943
SmoI	CTYRAG	1 cut(s)	943
Sse9I	AATT	3 cut(s)	193, 442, 598
SspMI	CTAG	2 cut(s)	582, 759
StyD4I	CCNGG	3 cut(s)	167, 691, 717
StyI	CCWWGG	2 cut(s)	239, 666
TaaI	ACNGT	3 cut(s)	394, 862, 970
TaqI	TCGA	2 cut(s)	306, 831
TaqII	GACCGA	1 cut(s)	358
TasI	AATT	3 cut(s)	193, 442, 598
TauI	GCSGC	1 cut(s)	887
Tru1I	TTAA	2 cut(s)	855, 936
Tru9I	TTAA	2 cut(s)	855, 936
TscAI	CASTG	2 cut(s)	433, 975
TseFI	GTSAC	3 cut(s)	372, 428, 557
TseI	GCWGC	1 cut(s)	983
Tsp45I	GTSAC	3 cut(s)	372, 428, 557
TspDTI	ATGAA	3 cut(s)	303, 525, 605
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	2 cut(s)	433, 975
Van91I	CCANNNNNTGG	1 cut(s)	908
VpaK11BI	GGWCC	6 cut(s)	15, 171, 215, 482, 612, 789
XspI	CTAG	2 cut(s)	582, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.