Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8494381.1

Orthogroup ID

OG0012905

Physical Location & Seq

Genomic Coordinates Reverse (-)

971 .. 2600

Gene Structure 1630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8494381.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgattataaatgagtggtattctgctgcaatggtggggttggctgtgtctggagcaagtgactggttggatggatatgtggctaggaggatgaagattaattctgttgttggctcctacctcgatccccttgcagataaggttcttattgggtgtgttgcattggcgatggtgcataaggatcttcttcaccctggtcttgttgggatcattgtgttgcgagatgttggcctcgttggtggtgcagtgtatcaacgagctagtagcttggggtggaagtggaaaagttggtccgacttcttcaaccttgatggaacccgtccccagaaggttgaacctctctttattagcaaggttaacacagttttccagttgattttagttgcggcagctctcctccaaccagagtttggaacacaagaaactcactcatatgttacatacctgagttggttagtggcgtcaacaacattggcttccactgcagcatatggagcacaacacttgaggaaatcggcatccattgctcggaaaccatcactgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0008808 GO:0009058 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010243 GO:0014070 GO:0016020 GO:0016740 GO:0016772 GO:0016780 GO:0019637 GO:0030145 GO:0030572 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032049 GO:0033993 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0046683 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0090407 GO:0097066 GO:0097068 GO:1901576 GO:1901698 GO:1901700 GO:1904386 GO:1905711

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

181

Amino Acids

19.7

Weight (kDa)

9.24

Isoelectric Point (pI)

17.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04870
fragaria_vesca	FvH4_3g02430
malus_domestica	MD10G1318100.v1.1
prunus_persica	Prupe.4G023700_v2.0.a1 Prupe.4G023700_v2.0.a1
pyrus_communis	pycom05g31260 pycom10g26960
rosa_chinensis	RchiOBHm_Chr5g0003681
rosa_laevigata	RLG00000031165
rosa_multiflora	Rmu_co7992166.1_g000001 Rmu_co8494381.1_g000001 Rmu_sc0028089.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072260
rosa_rugosa	Rorug04G0405800
rosa_samantha	Rh5AG032600 Rh5BG031200 Rh5CG035300
rosa_wichuraiana	Rw5G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	8
AccB7I	CCANNNNNTGG	1 cut(s)	410
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	3 cut(s)	119, 189, 215
AcyI	GRCGYC	1 cut(s)	461
AfiI	CCNNNNNNNGG	2 cut(s)	410, 528
AgsI	TTSAA	2 cut(s)	304, 335
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	3 cut(s)	260, 267, 392
AluI	AGCT	3 cut(s)	260, 267, 392
Alw21I	GWGCWC	1 cut(s)	499
AlwI	GGATC	3 cut(s)	119, 189, 215
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	3 cut(s)	26, 389, 485
AseI	ATTAAT	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	3 cut(s)	13, 401, 497
BccI	CCATC	4 cut(s)	65, 163, 305, 544
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BciT130I	CCWGG	1 cut(s)	195
BfaI	CTAG	2 cut(s)	84, 261
BfmI	CTRYAG	1 cut(s)	483
BisI	GCNGC	4 cut(s)	27, 387, 390, 486
BlsI	GCNGC	4 cut(s)	28, 388, 391, 487
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	2 cut(s)	115, 316
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	527
BpmI	CTGGAG	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	526
BsaHI	GRCGYC	1 cut(s)	461
BsaJI	CCNNGG	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	2 cut(s)	410, 528
Bse1I	ACTGG	2 cut(s)	68, 370
Bse3DI	GCAATG	2 cut(s)	36, 522
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	3 cut(s)	76, 96, 518
BseLI	CCNNNNNNNGG	2 cut(s)	410, 528
BseMI	GCAATG	2 cut(s)	36, 522
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	2 cut(s)	68, 370
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	3 cut(s)	13, 401, 497
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	499
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	410, 528
BsmFI	GGGAC	1 cut(s)	306
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp143I	GATC	3 cut(s)	124, 181, 207
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	438
BspLI	GGNNCC	2 cut(s)	115, 316
BspMAI	CTGCAG	1 cut(s)	487
BspPI	GGATC	3 cut(s)	119, 189, 215
BsrDI	GCAATG	2 cut(s)	36, 522
BsrI	ACTGG	2 cut(s)	68, 370
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	3 cut(s)	124, 181, 207
BssNI	GRCGYC	1 cut(s)	461
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	364, 543
BstACI	GRCGYC	1 cut(s)	461
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstDEI	CTNAG	1 cut(s)	446
BstF5I	GGATG	3 cut(s)	76, 96, 518
BstKTI	GATC	3 cut(s)	127, 184, 210
BstMBI	GATC	3 cut(s)	124, 181, 207
BstMWI	GCNNNNNNNGC	3 cut(s)	482, 494, 524
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	3 cut(s)	13, 401, 497
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	231
BtgZI	GCGATG	1 cut(s)	182
BtsCI	GGATG	3 cut(s)	76, 96, 518
BtsI	GCAGTG	2 cut(s)	252, 480
BtsIMutI	CAGTG	3 cut(s)	252, 480, 539
Cfr13I	GGNCC	1 cut(s)	291
CseI	GACGC	1 cut(s)	450
CviJI	RGCY	8 cut(s)	44, 83, 114, 231, 260, 267, 392, 476
CviKI_1	RGCY	8 cut(s)	44, 83, 114, 231, 260, 267, 392, 476
DdeI	CTNAG	1 cut(s)	446
DpnI	GATC	3 cut(s)	126, 183, 209
DpnII	GATC	3 cut(s)	124, 181, 207
Eco47I	GGWCC	1 cut(s)	291
EcoRII	CCWGG	1 cut(s)	193
FaiI	YATR	8 cut(s)	8, 78, 177, 433, 435, 442, 490, 492
FaqI	GGGAC	1 cut(s)	306
FauNDI	CATATG	2 cut(s)	433, 490
Fnu4HI	GCNGC	4 cut(s)	27, 387, 390, 486
FokI	GGATG	3 cut(s)	83, 103, 505
Fsp4HI	GCNGC	4 cut(s)	27, 387, 390, 486
FspBI	CTAG	2 cut(s)	84, 261
GluI	GCNGC	4 cut(s)	27, 387, 390, 486
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	231
HgaI	GACGC	1 cut(s)	450
Hin1I	GRCGYC	1 cut(s)	461
HincII	GTYRAC	2 cut(s)	358, 465
HindII	GTYRAC	2 cut(s)	358, 465
HpaI	GTTAAC	1 cut(s)	358
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	358, 465
Hpy188I	TCNGA	2 cut(s)	295, 531
Hpy188III	TCNNGA	1 cut(s)	51
Hpy8I	GTNNAC	2 cut(s)	358, 465
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	2 cut(s)	364, 543
HpyCH4V	TGCA	6 cut(s)	29, 134, 161, 175, 245, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	482, 494, 524
HpyF3I	CTNAG	1 cut(s)	446
Hsp92I	GRCGYC	1 cut(s)	461
KspAI	GTTAAC	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	124, 181, 207
LmnI	GCTCC	3 cut(s)	53, 119, 494
LpnPI	CCDG	8 cut(s)	36, 49, 180, 207, 338, 383, 417, 458
Lsp1109I	GCAGC	3 cut(s)	13, 401, 497
LweI	GCATC	1 cut(s)	527
MaeI	CTAG	2 cut(s)	84, 261
MaeIII	GTNAC	2 cut(s)	59, 436
MalI	GATC	3 cut(s)	126, 183, 209
MboI	GATC	3 cut(s)	124, 181, 207
MboII	GAAGA	4 cut(s)	106, 176, 179, 292
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	499
MluCI	AATT	1 cut(s)	100
MmeI	TCCRAC	3 cut(s)	48, 318, 424
MnlI	CCTC	6 cut(s)	81, 131, 242, 348, 407, 501
MseI	TTAA	2 cut(s)	99, 357
MslI	CAYNNNNRTG	2 cut(s)	432, 541
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	3 cut(s)	482, 494, 524
NdeI	CATATG	2 cut(s)	433, 490
NdeII	GATC	3 cut(s)	124, 181, 207
NlaIV	GGNNCC	2 cut(s)	115, 316
NmuCI	GTSAC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	410
PkrI	GCNGC	4 cut(s)	28, 388, 391, 487
PshBI	ATTAAT	1 cut(s)	99
PsiI	TTATAA	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	115, 316
PspPI	GGNCC	1 cut(s)	291
PstI	CTGCAG	1 cut(s)	487
PsuI	RGATCY	1 cut(s)	181
RseI	CAYNNNNRTG	2 cut(s)	432, 541
SaqAI	TTAA	2 cut(s)	99, 357
SatI	GCNGC	4 cut(s)	27, 387, 390, 486
Sau3AI	GATC	3 cut(s)	124, 181, 207
Sau96I	GGNCC	1 cut(s)	291
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	499
SfaNI	GCATC	1 cut(s)	527
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	1 cut(s)	291
SmiMI	CAYNNNNRTG	2 cut(s)	432, 541
SmlI	CTYRAG	1 cut(s)	505
SmoI	CTYRAG	1 cut(s)	505
Sse9I	AATT	1 cut(s)	100
SsiI	CCGC	1 cut(s)	386
SspMI	CTAG	2 cut(s)	84, 261
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	2 cut(s)	364, 543
TaqI	TCGA	1 cut(s)	123
TasI	AATT	1 cut(s)	100
TauI	GCSGC	1 cut(s)	389
Tru1I	TTAA	2 cut(s)	99, 357
Tru9I	TTAA	2 cut(s)	99, 357
TscAI	CASTG	3 cut(s)	252, 487, 546
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	3 cut(s)	26, 389, 485
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	107
TspRI	CASTG	3 cut(s)	252, 487, 546
Van91I	CCANNNNNTGG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	291
VspI	ATTAAT	1 cut(s)	99
XcmI	CCANNNNNNNNNTGG	1 cut(s)	407
XspI	CTAG	2 cut(s)	84, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.