Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0012905

Physical Location & Seq

Genomic Coordinates Reverse (-)

2242927 .. 2245156

Gene Structure 2230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG032600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCGGGTTTCCGGTCCCTGAAATCCCTAATTCGAAACCCTAAAAAATCCAGAAGCTTCTTCACCGCCACCGTCTCCCCATTCTCCTCCCCTACCTCTCGCTCCTCCCCATCTCAGATTTCCAGAACCTTCCTCCTCTCTCCTCTCTCCAACTGGATCATCCTCCCCTCCCATGGGCCCCACTGCCCGCTCTTCCTCTCTTCCCCGCCGTGGAAGCTCTCGCAGTCCGCCACGCCGCTCCACCTCCGCGGAAACGCCGCCGTTCTGGAAAAGATCGAAGCTTTGAACTTTAACAATCTGCTCAGGAAGAAGAAGAGAACGACCTCCCCTCCGTCCGAATTGACCTCCGGGTCGGACCCGACCGTGTCGGATCGTCACCGGTTGAAAGTCGCCGGTGGCGATTTCGTCAATTTGCCTAATTTGATCTCCATGACTCGGCTGATCTCTGGTCCTTTTCTTGGATGGATGATTATAAATGAGTGGTATTCTGCTGCAATGGTGGGGTTGGCTGTGTCTGGAGCAAGTGACTGGGTTCTTATTGGGTGTGTTGCATTGGCGATGGTGCATAAGGATCTTCTTCACCCTGGTCTTGTTGGGATCATTGTGTTGCGAGATGTTGGCCTCGTTGGTGGTGCAGTGTATCAACGAGCTAGTAGCTTGGGGTGGAAGTGGAAAAGTTGGTCCGACTTCTTCAACCTTGATGGAACCCGTCCCCAGAAGGTTGAACCTCTCTTTATTAGCAAGGTTAACACAGTTTTCCAGTTGATTTTAGTTGCGGCAGCTCTCCTCCAACCAGAGTTTGGAACACAAGAAACTCACTCATATGTTACATACCTGAGTTGGTTAGTGGCGTCAACAACATTGGCTTCCACTGCAGCATATGGAGCACAACACTTGAGGAAATCGGCATCCATTGCTCGGAAACCATCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0008808 GO:0009058 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010243 GO:0014070 GO:0016020 GO:0016740 GO:0016772 GO:0016780 GO:0019637 GO:0030145 GO:0030572 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032049 GO:0033993 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0046683 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0090407 GO:0097066 GO:0097068 GO:1901576 GO:1901698 GO:1901700 GO:1904386 GO:1905711

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

311

Amino Acids

33.95

Weight (kDa)

10.28

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04870
fragaria_vesca	FvH4_3g02430
malus_domestica	MD10G1318100.v1.1
prunus_persica	Prupe.4G023700_v2.0.a1 Prupe.4G023700_v2.0.a1
pyrus_communis	pycom05g31260 pycom10g26960
rosa_chinensis	RchiOBHm_Chr5g0003681
rosa_laevigata	RLG00000031165
rosa_multiflora	Rmu_co7992166.1_g000001 Rmu_co8494381.1_g000001 Rmu_sc0028089.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072260
rosa_rugosa	Rorug04G0405800
rosa_samantha	Rh5AG032600 Rh5BG031200 Rh5CG035300
rosa_wichuraiana	Rw5G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	473
AasI	GACNNNNNNGTC	1 cut(s)	349
AccB7I	CCANNNNNTGG	1 cut(s)	800
AccBSI	CCGCTC	2 cut(s)	190, 238
AccII	CGCG	1 cut(s)	249
AclWI	GGATC	4 cut(s)	164, 378, 579, 605
AcyI	GRCGYC	1 cut(s)	851
AfiI	CCNNNNNNNGG	7 cut(s)	173, 174, 210, 435, 458, 800, 918
AgeI	ACCGGT	1 cut(s)	378
AgsI	TTSAA	4 cut(s)	286, 385, 694, 725
AjnI	CCWGG	1 cut(s)	583
AluBI	AGCT	6 cut(s)	57, 217, 281, 650, 657, 782
AluI	AGCT	6 cut(s)	57, 217, 281, 650, 657, 782
Alw21I	GWGCWC	1 cut(s)	889
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	4 cut(s)	164, 378, 579, 605
AoxI	GGCC	2 cut(s)	176, 619
ApaI	GGGCCC	1 cut(s)	180
ApeKI	GCWGC	3 cut(s)	491, 779, 875
AsiGI	ACCGGT	1 cut(s)	378
AspS9I	GGNCC	6 cut(s)	15, 176, 177, 355, 449, 681
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	3 cut(s)	55, 368, 572
AsuII	TTCGAA	1 cut(s)	34
AvaII	GGWCC	4 cut(s)	15, 355, 449, 681
BaeGI	GKGCMC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	889
BbvI	GCAGC	3 cut(s)	478, 791, 887
BccI	CCATC	5 cut(s)	118, 456, 553, 695, 934
BceAI	ACGGC	2 cut(s)	193, 245
BciT130I	CCWGG	1 cut(s)	585
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	651
BfmI	CTRYAG	1 cut(s)	873
BisI	GCNGC	6 cut(s)	236, 258, 492, 777, 780, 876
BlsI	GCNGC	6 cut(s)	237, 259, 493, 778, 781, 877
Bme1390I	CCNGG	2 cut(s)	349, 585
Bme18I	GGWCC	4 cut(s)	15, 355, 449, 681
BmgT120I	GGNCC	6 cut(s)	15, 176, 177, 355, 449, 681
BmiI	GGNNCC	5 cut(s)	17, 178, 179, 357, 706
BmrFI	CCNGG	2 cut(s)	349, 585
BmrI	ACTGGG	1 cut(s)	538
BmsI	GCATC	1 cut(s)	917
BmuI	ACTGGG	1 cut(s)	538
BpmI	CTGGAG	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	302
Bpu14I	TTCGAA	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	916
BpuMI	CCSGG	1 cut(s)	349
BsaHI	GRCGYC	1 cut(s)	851
BsaJI	CCNNGG	4 cut(s)	172, 209, 247, 583
BsaWI	WCCGGW	2 cut(s)	12, 378
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	7 cut(s)	173, 174, 210, 435, 458, 800, 918
Bse118I	RCCGGY	2 cut(s)	378, 392
Bse1I	ACTGG	3 cut(s)	158, 533, 760
Bse3DI	GCAATG	2 cut(s)	501, 912
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	4 cut(s)	172, 209, 247, 583
BseGI	GGATG	4 cut(s)	159, 467, 471, 908
BseLI	CCNNNNNNNGG	7 cut(s)	173, 174, 210, 435, 458, 800, 918
BseMI	GCAATG	2 cut(s)	501, 912
BseMII	CTCAG	3 cut(s)	128, 316, 827
BseNI	ACTGG	3 cut(s)	158, 533, 760
BseRI	GAGGAG	5 cut(s)	76, 94, 125, 132, 776
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	3 cut(s)	478, 791, 887
BsgI	GTGCAG	1 cut(s)	654
Bsh1236I	CGCG	1 cut(s)	249
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	2 cut(s)	178, 621
BshTI	ACCGGT	1 cut(s)	378
BsiEI	CGRYCG	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	889
BsiSI	CCGG	4 cut(s)	13, 348, 379, 393
BslFI	GGGAC	1 cut(s)	696
BslI	CCNNNNNNNGG	7 cut(s)	173, 174, 210, 435, 458, 800, 918
BsmAI	GTCTC	1 cut(s)	79
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	696
BsnI	GGCC	2 cut(s)	178, 621
Bsp119I	TTCGAA	1 cut(s)	34
Bsp120I	GGGCCC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	180, 889
Bsp143I	GATC	7 cut(s)	156, 273, 370, 423, 441, 571, 597
Bsp19I	CCATGG	1 cut(s)	172
BspANI	GGCC	2 cut(s)	178, 621
BspCNI	CTCAG	3 cut(s)	127, 315, 828
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	5 cut(s)	17, 178, 179, 357, 706
BspMAI	CTGCAG	1 cut(s)	877
BspPI	GGATC	4 cut(s)	164, 378, 579, 605
BspQI	GCTCTTC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	34
BsrBI	CCGCTC	2 cut(s)	190, 238
BsrDI	GCAATG	2 cut(s)	501, 912
BsrFI	RCCGGY	2 cut(s)	378, 392
BsrI	ACTGG	3 cut(s)	158, 533, 760
BssAI	RCCGGY	2 cut(s)	378, 392
BssECI	CCNNGG	4 cut(s)	172, 209, 247, 583
BssMI	GATC	7 cut(s)	156, 273, 370, 423, 441, 571, 597
BssNI	GRCGYC	1 cut(s)	851
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	4 cut(s)	73, 364, 754, 933
Bst6I	CTCTTC	3 cut(s)	197, 205, 308
BstACI	GRCGYC	1 cut(s)	851
BstAPI	GCANNNNNTGC	1 cut(s)	914
BstBI	TTCGAA	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	3 cut(s)	114, 302, 836
BstDSI	CCRYGG	3 cut(s)	172, 209, 247
BstF5I	GGATG	4 cut(s)	159, 467, 471, 908
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	7 cut(s)	159, 276, 373, 426, 444, 574, 600
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	7 cut(s)	156, 273, 370, 423, 441, 571, 597
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	4 cut(s)	214, 872, 884, 914
BstNI	CCWGG	1 cut(s)	585
BstSCI	CCNGG	2 cut(s)	347, 583
BstSFI	CTRYAG	1 cut(s)	873
BstSLI	GKGCMC	1 cut(s)	180
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	3 cut(s)	478, 791, 887
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
BsuRI	GGCC	2 cut(s)	178, 621
BtgI	CCRYGG	3 cut(s)	172, 209, 247
BtgZI	GCGATG	1 cut(s)	572
BtsCI	GGATG	4 cut(s)	159, 467, 471, 908
BtsI	GCAGTG	3 cut(s)	181, 642, 870
BtsIMutI	CAGTG	4 cut(s)	181, 642, 870, 929
Cac8I	GCNNGC	1 cut(s)	188
Cfr10I	RCCGGY	2 cut(s)	378, 392
Cfr13I	GGNCC	6 cut(s)	15, 176, 177, 355, 449, 681
Cfr42I	CCGCGG	1 cut(s)	250
CseI	GACGC	1 cut(s)	840
CspAI	ACCGGT	1 cut(s)	378
CviAII	CATG	2 cut(s)	173, 430
DdeI	CTNAG	3 cut(s)	114, 302, 836
DpnI	GATC	7 cut(s)	158, 275, 372, 425, 443, 573, 599
DpnII	GATC	7 cut(s)	156, 273, 370, 423, 441, 571, 597
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
Eam1104I	CTCTTC	3 cut(s)	197, 205, 308
EarI	CTCTTC	3 cut(s)	197, 205, 308
EciI	GGCGGA	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	180
Eco47I	GGWCC	4 cut(s)	15, 355, 449, 681
EcoO109I	RGGNCCY	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	2 cut(s)	176, 433
FaiI	YATR	9 cut(s)	174, 431, 473, 567, 823, 825, 832, 880, 882
FaqI	GGGAC	1 cut(s)	696
FatI	CATG	2 cut(s)	172, 429
FauI	CCCGC	2 cut(s)	195, 213
FauNDI	CATATG	2 cut(s)	823, 880
Fnu4HI	GCNGC	6 cut(s)	236, 258, 492, 777, 780, 876
FokI	GGATG	4 cut(s)	146, 474, 478, 895
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	6 cut(s)	236, 258, 492, 777, 780, 876
FspBI	CTAG	1 cut(s)	651
GluI	GCNGC	6 cut(s)	236, 258, 492, 777, 780, 876
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	178, 621
HapII	CCGG	4 cut(s)	13, 348, 379, 393
HgaI	GACGC	1 cut(s)	840
Hin1I	GRCGYC	1 cut(s)	851
Hin1II	CATG	2 cut(s)	176, 433
HincII	GTYRAC	2 cut(s)	748, 855
HindII	GTYRAC	2 cut(s)	748, 855
HindIII	AAGCTT	2 cut(s)	55, 279
HinfI	GANTC	1 cut(s)	433
HpaI	GTTAAC	1 cut(s)	748
HpaII	CCGG	4 cut(s)	13, 348, 379, 393
HphI	GGTGA	3 cut(s)	55, 368, 572
Hpy166II	GTNNAC	2 cut(s)	748, 855
Hpy188I	TCNGA	6 cut(s)	117, 337, 355, 370, 685, 921
Hpy188III	TCNNGA	5 cut(s)	51, 123, 266, 304, 516
Hpy8I	GTNNAC	2 cut(s)	748, 855
HpyAV	CCTTC	2 cut(s)	139, 712
HpyCH4III	ACNGT	4 cut(s)	73, 364, 754, 933
HpyCH4V	TGCA	5 cut(s)	494, 551, 565, 635, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	214, 872, 884, 914
HpyF3I	CTNAG	3 cut(s)	114, 302, 836
Hsp92I	GRCGYC	1 cut(s)	851
Hsp92II	CATG	2 cut(s)	176, 433
KspAI	GTTAAC	1 cut(s)	748
KspI	CCGCGG	1 cut(s)	250
Kzo9I	GATC	7 cut(s)	156, 273, 370, 423, 441, 571, 597
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	4 cut(s)	107, 243, 518, 884
Lsp1109I	GCAGC	3 cut(s)	478, 791, 887
LweI	GCATC	1 cut(s)	917
MaeI	CTAG	1 cut(s)	651
MaeIII	GTNAC	3 cut(s)	374, 524, 826
MalI	GATC	7 cut(s)	158, 275, 372, 425, 443, 573, 599
MbiI	CCGCTC	2 cut(s)	190, 238
MboI	GATC	7 cut(s)	156, 273, 370, 423, 441, 571, 597
MboII	GAAGA	9 cut(s)	52, 184, 192, 319, 322, 325, 566, 569, 682
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	2 cut(s)	180, 889
MluCI	AATT	4 cut(s)	30, 338, 409, 418
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	5 cut(s)	174, 333, 348, 708, 814
MseI	TTAA	2 cut(s)	291, 747
MslI	CAYNNNNRTG	2 cut(s)	822, 931
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	4 cut(s)	13, 348, 379, 393
MspR9I	CCNGG	2 cut(s)	349, 585
MvaI	CCWGG	1 cut(s)	585
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	4 cut(s)	214, 872, 884, 914
NciI	CCSGG	1 cut(s)	349
NcoI	CCATGG	1 cut(s)	172
NdeI	CATATG	2 cut(s)	823, 880
NdeII	GATC	7 cut(s)	156, 273, 370, 423, 441, 571, 597
NlaIII	CATG	2 cut(s)	176, 433
NlaIV	GGNNCC	5 cut(s)	17, 178, 179, 357, 706
NmeAIII	GCCGAG	1 cut(s)	415
NmuCI	GTSAC	2 cut(s)	374, 524
NspV	TTCGAA	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PflFI	GACNNNGTC	1 cut(s)	364
PflMI	CCANNNNNTGG	1 cut(s)	800
PinAI	ACCGGT	1 cut(s)	378
PkrI	GCNGC	6 cut(s)	237, 259, 493, 778, 781, 877
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PsiI	TTATAA	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	5 cut(s)	17, 178, 179, 357, 706
PspOMI	GGGCCC	1 cut(s)	176
PspPI	GGNCC	6 cut(s)	15, 176, 177, 355, 449, 681
PstI	CTGCAG	1 cut(s)	877
PsuI	RGATCY	1 cut(s)	571
PsyI	GACNNNGTC	1 cut(s)	364
RseI	CAYNNNNRTG	2 cut(s)	822, 931
SacII	CCGCGG	1 cut(s)	250
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	291, 747
SatI	GCNGC	6 cut(s)	236, 258, 492, 777, 780, 876
Sau3AI	GATC	7 cut(s)	156, 273, 370, 423, 441, 571, 597
Sau96I	GGNCC	6 cut(s)	15, 176, 177, 355, 449, 681
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	2 cut(s)	349, 585
SduI	GDGCHC	2 cut(s)	180, 889
SfaNI	GCATC	1 cut(s)	917
SfcI	CTRYAG	1 cut(s)	873
Sfr303I	CCGCGG	1 cut(s)	250
SfuI	TTCGAA	1 cut(s)	34
SgrAI	CRCCGGYG	1 cut(s)	392
SgrBI	CCGCGG	1 cut(s)	250
SinI	GGWCC	4 cut(s)	15, 355, 449, 681
SmiMI	CAYNNNNRTG	2 cut(s)	822, 931
SmlI	CTYRAG	1 cut(s)	895
SmoI	CTYRAG	1 cut(s)	895
Sse9I	AATT	4 cut(s)	30, 338, 409, 418
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	2 cut(s)	347, 583
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	4 cut(s)	73, 364, 754, 933
TaqI	TCGA	2 cut(s)	34, 276
TasI	AATT	4 cut(s)	30, 338, 409, 418
TauI	GCSGC	3 cut(s)	238, 260, 779
Tru1I	TTAA	2 cut(s)	291, 747
Tru9I	TTAA	2 cut(s)	291, 747
TscAI	CASTG	4 cut(s)	188, 642, 877, 936
TseFI	GTSAC	2 cut(s)	374, 524
TseI	GCWGC	3 cut(s)	491, 779, 875
Tsp45I	GTSAC	2 cut(s)	374, 524
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	4 cut(s)	188, 642, 877, 936
Tth111I	GACNNNGTC	1 cut(s)	364
Van91I	CCANNNNNTGG	1 cut(s)	800
VpaK11BI	GGWCC	4 cut(s)	15, 355, 449, 681
XcmI	CCANNNNNNNNNTGG	1 cut(s)	797
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.