Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012905

Physical Location & Seq

Genomic Coordinates Reverse (-)

1218676 .. 1220955

Gene Structure 2280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGGTATTCCGATCCCTCAGAGCCCTAATTCGAAACCCTAAAAAATCCAGAACCTTCCTCACCGCCGCCGCCTCACCAATCTCCTCCCCCACCTCTCCTCGCTCTCACATCTCCCGATCCTTCCTCTCTCCCCTCTCCAATTGGATCGTCGTCCCCTTCCATGGACCCCACAACGGCCCGCTCTTCCTCTCCTTCCCGCCGTGGAAGCTCTCTCAGTCCGCCACGCCGCTCTACCTCCGCAGAAACGCCGCCGTTTTGGAAAAGATCGAAGCTTTGAACTTCAATCTGCTCCGGAAGAAGAGAACGACCTCCCCGCCCGAATTGACCTCCGGGTCGGATCCGACGGTCTCGGATCGTCCACCGTTGAAGGAAGCCGGCGACGATTTCGTCAATTTGCCTAATTTGATCTCCATGGCTCGAATGGTTTCCGGTCCTGTTCTTGGATGGATGATTGTGAATGAGTGGTATTCAGCTGCAATGGTGGGGCTGGCTGTGTCTGGGGCAAGTGACTGGTTGGATGGGTATGTGGCTAGGAGGATGAGGATTAACTCTGTTGTCGGCTCCTACCTTGATCCCCTTGCAGATAAGGTTCTTATTGGGTGCGTTGCATTGGCGATGGTGCATAAGGATCTTCTTCACCCTGGTCTTGTTGGAATCATTGTGTTGCGAGATGTTGGCCTTGTCAGTGGTGCAGTGTATGAAAGAGCTAGTAGCTTGGGCTGGAAGTGGAAAAGTTGGTCAGATTTCTTCAACCTGGATGCAACCCGTCCCCAGAAGGTGGAACCTCTCTTTATTAGCAAGGTTAACACAGTTTTCCAGTTGGTTTTAGTTGCGGCAGCTCTCCTCCAACCAGAGTTTGGAACATTAGAAACTCAGTCATATGTTACATACTTGAGTTGGTTAGTGGCATCAACAACATTGGCTTCAACTGCAGCATATGGAGCACAACACTTGAGGAAATCGGCATCCGTTGCTCGGAAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0008808 GO:0009058 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010243 GO:0014070 GO:0016020 GO:0016740 GO:0016772 GO:0016780 GO:0019637 GO:0030145 GO:0030572 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032049 GO:0033993 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0046683 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0090407 GO:0097066 GO:0097068 GO:1901576 GO:1901698 GO:1901700 GO:1904386 GO:1905711

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

330

Amino Acids

36.05

Weight (kDa)

9.96

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	132 - 303	8.6e-26	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04870
fragaria_vesca	FvH4_3g02430
malus_domestica	MD10G1318100.v1.1
prunus_persica	Prupe.4G023700_v2.0.a1 Prupe.4G023700_v2.0.a1
pyrus_communis	pycom05g31260 pycom10g26960
rosa_chinensis	RchiOBHm_Chr5g0003681
rosa_laevigata	RLG00000031165
rosa_multiflora	Rmu_co7992166.1_g000001 Rmu_co8494381.1_g000001 Rmu_sc0028089.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072260
rosa_rugosa	Rorug04G0405800
rosa_samantha	Rh5AG032600 Rh5BG031200 Rh5CG035300
rosa_wichuraiana	Rw5G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	334, 389
AccB7I	CCANNNNNTGG	2 cut(s)	781, 860
AccBSI	CCGCTC	2 cut(s)	184, 232
AccIII	TCCGGA	1 cut(s)	294
AclWI	GGATC	8 cut(s)	9, 114, 155, 335, 348, 363, 569, 639
AfiI	CCNNNNNNNGG	6 cut(s)	164, 176, 443, 781, 860, 978
AgsI	TTSAA	5 cut(s)	280, 286, 370, 754, 930
AjnI	CCWGG	2 cut(s)	643, 756
AluBI	AGCT	6 cut(s)	211, 275, 476, 710, 717, 842
AluI	AGCT	6 cut(s)	211, 275, 476, 710, 717, 842
Alw21I	GWGCWC	1 cut(s)	949
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	8 cut(s)	9, 114, 155, 335, 348, 363, 569, 639
Aor13HI	TCCGGA	1 cut(s)	294
AoxI	GGCC	2 cut(s)	178, 679
ApeKI	GCWGC	3 cut(s)	476, 839, 935
Asp700I	GAANNNNTTC	1 cut(s)	427
AspS9I	GGNCC	3 cut(s)	167, 179, 434
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	3 cut(s)	55, 69, 632
AsuII	TTCGAA	1 cut(s)	34
AvaII	GGWCC	2 cut(s)	167, 434
BamHI	GGATCC	1 cut(s)	340
BanII	GRGCYC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	949
BbvI	GCAGC	3 cut(s)	463, 851, 947
BccI	CCATC	3 cut(s)	441, 515, 613
BceAI	ACGGC	3 cut(s)	187, 193, 239
BciT130I	CCWGG	2 cut(s)	645, 758
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	2 cut(s)	534, 711
BfmI	CTRYAG	1 cut(s)	933
BisI	GCNGC	8 cut(s)	69, 72, 230, 252, 477, 837, 840, 936
BlsI	GCNGC	8 cut(s)	70, 73, 231, 253, 478, 838, 841, 937
Bme1390I	CCNGG	3 cut(s)	334, 645, 758
Bme18I	GGWCC	2 cut(s)	167, 434
BmgT120I	GGNCC	3 cut(s)	167, 179, 434
BmiI	GGNNCC	4 cut(s)	169, 342, 565, 786
BmrFI	CCNGG	3 cut(s)	334, 645, 758
BmsI	GCATC	3 cut(s)	751, 920, 977
Bpu14I	TTCGAA	1 cut(s)	34
BpuEI	CTTGAG	2 cut(s)	916, 976
BpuMI	CCSGG	1 cut(s)	334
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	4 cut(s)	163, 203, 414, 643
BsaWI	WCCGGW	2 cut(s)	294, 431
Bsc4I	CCNNNNNNNGG	6 cut(s)	164, 176, 443, 781, 860, 978
Bse118I	RCCGGY	1 cut(s)	377
Bse1I	ACTGG	2 cut(s)	518, 820
Bse3DI	GCAATG	1 cut(s)	486
BseAI	TCCGGA	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	645, 758
BseDI	CCNNGG	4 cut(s)	163, 203, 414, 643
BseGI	GGATG	6 cut(s)	452, 456, 526, 546, 766, 968
BseLI	CCNNNNNNNGG	6 cut(s)	164, 176, 443, 781, 860, 978
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	3 cut(s)	34, 230, 890
BseNI	ACTGG	2 cut(s)	518, 820
BseRI	GAGGAG	3 cut(s)	76, 90, 836
BseXI	GCAGC	3 cut(s)	463, 851, 947
BsgI	GTGCAG	1 cut(s)	714
BshFI	GGCC	2 cut(s)	180, 681
BsiHKAI	GWGCWC	1 cut(s)	949
BsiSI	CCGG	4 cut(s)	295, 333, 378, 432
BslFI	GGGAC	2 cut(s)	140, 756
BslI	CCNNNNNNNGG	6 cut(s)	164, 176, 443, 781, 860, 978
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	2 cut(s)	140, 756
BsnI	GGCC	2 cut(s)	180, 681
Bso31I	GGTCTC	1 cut(s)	355
Bsp119I	TTCGAA	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	28, 949
Bsp13I	TCCGGA	1 cut(s)	294
Bsp143I	GATC	9 cut(s)	14, 119, 147, 267, 340, 355, 408, 574, 631
Bsp19I	CCATGG	2 cut(s)	163, 414
BspANI	GGCC	2 cut(s)	180, 681
BspCNI	CTCAG	3 cut(s)	33, 229, 889
BspEI	TCCGGA	1 cut(s)	294
BspLI	GGNNCC	4 cut(s)	169, 342, 565, 786
BspMAI	CTGCAG	1 cut(s)	937
BspPI	GGATC	8 cut(s)	9, 114, 155, 335, 348, 363, 569, 639
BspQI	GCTCTTC	1 cut(s)	191
BspT104I	TTCGAA	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	355
BsrBI	CCGCTC	2 cut(s)	184, 232
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	1 cut(s)	377
BsrI	ACTGG	2 cut(s)	518, 820
BssAI	RCCGGY	1 cut(s)	377
BssECI	CCNNGG	4 cut(s)	163, 203, 414, 643
BssMI	GATC	9 cut(s)	14, 119, 147, 267, 340, 355, 408, 574, 631
BssT1I	CCWWGG	2 cut(s)	163, 414
Bst2UI	CCWGG	2 cut(s)	645, 758
Bst4CI	ACNGT	3 cut(s)	349, 366, 814
Bst6I	CTCTTC	2 cut(s)	191, 296
BstAPI	GCANNNNNTGC	1 cut(s)	974
BstBI	TTCGAA	1 cut(s)	34
BstC8I	GCNNGC	3 cut(s)	182, 379, 492
BstDEI	CTNAG	3 cut(s)	20, 216, 876
BstDSI	CCRYGG	3 cut(s)	163, 203, 414
BstF5I	GGATG	6 cut(s)	452, 456, 526, 546, 766, 968
BstKTI	GATC	9 cut(s)	17, 122, 150, 270, 343, 358, 411, 577, 634
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	9 cut(s)	14, 119, 147, 267, 340, 355, 408, 574, 631
BstMWI	GCNNNNNNNGC	4 cut(s)	208, 932, 944, 974
BstNI	CCWGG	2 cut(s)	645, 758
BstSCI	CCNGG	3 cut(s)	332, 643, 756
BstSFI	CTRYAG	1 cut(s)	933
BstV1I	GCAGC	3 cut(s)	463, 851, 947
BstX2I	RGATCY	2 cut(s)	340, 631
BstYI	RGATCY	2 cut(s)	340, 631
BsuRI	GGCC	2 cut(s)	180, 681
BtgI	CCRYGG	3 cut(s)	163, 203, 414
BtgZI	GCGATG	1 cut(s)	632
BtsCI	GGATG	6 cut(s)	452, 456, 526, 546, 766, 968
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	2 cut(s)	694, 702
Cac8I	GCNNGC	3 cut(s)	182, 379, 492
Cfr10I	RCCGGY	1 cut(s)	377
Cfr13I	GGNCC	3 cut(s)	167, 179, 434
CviAII	CATG	2 cut(s)	164, 415
DdeI	CTNAG	3 cut(s)	20, 216, 876
DpnI	GATC	9 cut(s)	16, 121, 149, 269, 342, 357, 410, 576, 633
DpnII	GATC	9 cut(s)	14, 119, 147, 267, 340, 355, 408, 574, 631
DrdI	GACNNNNNNGTC	2 cut(s)	334, 389
DseDI	GACNNNNNNGTC	2 cut(s)	334, 389
Eam1104I	CTCTTC	2 cut(s)	191, 296
EarI	CTCTTC	2 cut(s)	191, 296
EciI	GGCGGA	1 cut(s)	211
Eco130I	CCWWGG	2 cut(s)	163, 414
Eco24I	GRGCYC	1 cut(s)	28
Eco31I	GGTCTC	1 cut(s)	355
Eco47I	GGWCC	2 cut(s)	167, 434
EcoRII	CCWGG	2 cut(s)	643, 756
EcoT14I	CCWWGG	2 cut(s)	163, 414
EcoT38I	GRGCYC	1 cut(s)	28
ErhI	CCWWGG	2 cut(s)	163, 414
FaeI	CATG	2 cut(s)	167, 418
FaqI	GGGAC	2 cut(s)	140, 756
FatI	CATG	2 cut(s)	163, 414
FauI	CCCGC	3 cut(s)	189, 207, 324
FauNDI	CATATG	2 cut(s)	883, 940
Fnu4HI	GCNGC	8 cut(s)	69, 72, 230, 252, 477, 837, 840, 936
FokI	GGATG	6 cut(s)	459, 463, 533, 553, 773, 955
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	8 cut(s)	69, 72, 230, 252, 477, 837, 840, 936
FspBI	CTAG	2 cut(s)	534, 711
GluI	GCNGC	8 cut(s)	69, 72, 230, 252, 477, 837, 840, 936
HaeIII	GGCC	2 cut(s)	180, 681
HapII	CCGG	4 cut(s)	295, 333, 378, 432
Hin1II	CATG	2 cut(s)	167, 418
HincII	GTYRAC	1 cut(s)	808
HindII	GTYRAC	1 cut(s)	808
HindIII	AAGCTT	1 cut(s)	273
HinfI	GANTC	1 cut(s)	657
HpaI	GTTAAC	1 cut(s)	808
HpaII	CCGG	4 cut(s)	295, 333, 378, 432
HphI	GGTGA	3 cut(s)	55, 69, 632
Hpy166II	GTNNAC	2 cut(s)	362, 808
Hpy188I	TCNGA	7 cut(s)	14, 23, 340, 345, 355, 745, 981
Hpy188III	TCNNGA	3 cut(s)	51, 117, 295
Hpy8I	GTNNAC	2 cut(s)	362, 808
Hpy99I	CGWCG	3 cut(s)	155, 349, 386
HpyAV	CCTTC	6 cut(s)	67, 133, 169, 205, 364, 772
HpyCH4III	ACNGT	3 cut(s)	349, 366, 814
HpyCH4V	TGCA	7 cut(s)	479, 584, 611, 625, 695, 764, 935
HpyF10VI	GCNNNNNNNGC	4 cut(s)	208, 932, 944, 974
HpyF3I	CTNAG	3 cut(s)	20, 216, 876
Hsp92II	CATG	2 cut(s)	167, 418
Kpn2I	TCCGGA	1 cut(s)	294
KroI	GCCGGC	1 cut(s)	377
KroNI	GCCGGC	1 cut(s)	379
KspAI	GTTAAC	1 cut(s)	808
Kzo9I	GATC	9 cut(s)	14, 119, 147, 267, 340, 355, 408, 574, 631
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	3 cut(s)	297, 569, 944
Lsp1109I	GCAGC	3 cut(s)	463, 851, 947
LweI	GCATC	3 cut(s)	751, 920, 977
MaeI	CTAG	2 cut(s)	534, 711
MaeIII	GTNAC	2 cut(s)	509, 886
MalI	GATC	9 cut(s)	16, 121, 149, 269, 342, 357, 410, 576, 633
MbiI	CCGCTC	2 cut(s)	184, 232
MboI	GATC	9 cut(s)	14, 119, 147, 267, 340, 355, 408, 574, 631
MboII	GAAGA	6 cut(s)	178, 310, 313, 626, 629, 742
MfeI	CAATTG	1 cut(s)	142
MflI	RGATCY	2 cut(s)	340, 631
MhlI	GDGCHC	2 cut(s)	28, 949
MluCI	AATT	5 cut(s)	30, 142, 323, 394, 403
MmeI	TCCRAC	5 cut(s)	318, 368, 498, 634, 874
MroI	TCCGGA	1 cut(s)	294
MroNI	GCCGGC	1 cut(s)	377
MroXI	GAANNNNTTC	1 cut(s)	427
MseI	TTAA	2 cut(s)	549, 807
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	4 cut(s)	295, 333, 378, 432
MspR9I	CCNGG	3 cut(s)	334, 645, 758
MunI	CAATTG	1 cut(s)	142
MvaI	CCWGG	2 cut(s)	645, 758
MwoI	GCNNNNNNNGC	4 cut(s)	208, 932, 944, 974
NaeI	GCCGGC	1 cut(s)	379
NciI	CCSGG	1 cut(s)	334
NcoI	CCATGG	2 cut(s)	163, 414
NdeI	CATATG	2 cut(s)	883, 940
NdeII	GATC	9 cut(s)	14, 119, 147, 267, 340, 355, 408, 574, 631
NgoMIV	GCCGGC	1 cut(s)	377
NlaIII	CATG	2 cut(s)	167, 418
NlaIV	GGNNCC	4 cut(s)	169, 342, 565, 786
NmuCI	GTSAC	1 cut(s)	509
NspV	TTCGAA	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	191
PdiI	GCCGGC	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	427
PfeI	GAWTC	1 cut(s)	657
PflMI	CCANNNNNTGG	2 cut(s)	781, 860
PkrI	GCNGC	8 cut(s)	70, 73, 231, 253, 478, 838, 841, 937
Psp6I	CCWGG	2 cut(s)	643, 756
PspGI	CCWGG	2 cut(s)	643, 756
PspN4I	GGNNCC	4 cut(s)	169, 342, 565, 786
PspPI	GGNCC	3 cut(s)	167, 179, 434
PstI	CTGCAG	1 cut(s)	937
PsuI	RGATCY	2 cut(s)	340, 631
PvuII	CAGCTG	1 cut(s)	476
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	549, 807
SatI	GCNGC	8 cut(s)	69, 72, 230, 252, 477, 837, 840, 936
Sau3AI	GATC	9 cut(s)	14, 119, 147, 267, 340, 355, 408, 574, 631
Sau96I	GGNCC	3 cut(s)	167, 179, 434
ScrFI	CCNGG	3 cut(s)	334, 645, 758
SduI	GDGCHC	2 cut(s)	28, 949
SfaNI	GCATC	3 cut(s)	751, 920, 977
SfcI	CTRYAG	1 cut(s)	933
SfuI	TTCGAA	1 cut(s)	34
SinI	GGWCC	2 cut(s)	167, 434
SmlI	CTYRAG	2 cut(s)	895, 955
SmoI	CTYRAG	2 cut(s)	895, 955
Sse9I	AATT	5 cut(s)	30, 142, 323, 394, 403
SspMI	CTAG	2 cut(s)	534, 711
StyD4I	CCNGG	3 cut(s)	332, 643, 756
StyI	CCWWGG	2 cut(s)	163, 414
TaaI	ACNGT	3 cut(s)	349, 366, 814
TaqI	TCGA	3 cut(s)	34, 270, 421
TasI	AATT	5 cut(s)	30, 142, 323, 394, 403
TauI	GCSGC	5 cut(s)	71, 74, 232, 254, 839
TfiI	GAWTC	1 cut(s)	657
Tru1I	TTAA	2 cut(s)	549, 807
Tru9I	TTAA	2 cut(s)	549, 807
TscAI	CASTG	2 cut(s)	694, 702
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	3 cut(s)	476, 839, 935
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	1 cut(s)	717
TspGWI	ACGGA	1 cut(s)	961
TspRI	CASTG	2 cut(s)	694, 702
Van91I	CCANNNNNTGG	2 cut(s)	781, 860
VpaK11BI	GGWCC	2 cut(s)	167, 434
XcmI	CCANNNNNNNNNTGG	2 cut(s)	421, 857
XmnI	GAANNNNTTC	1 cut(s)	427
XspI	CTAG	2 cut(s)	534, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.