Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003728

Physical Location & Seq

Genomic Coordinates Reverse (-)

2476390 .. 2482447

Gene Structure 6058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G04890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2232 bp

ATGTACCATCCAAACATGTTTGAGAGCCATCATATGTTCGATATGACCCCAAAGAGTACCTCTGATAACGACTTGGGAATCACCGGTAGCCGAGAAGATGACTTTGAGACCAAGTCAGGTACCGAAGTCACTACTGAGAATCCTTCTGGTGAAGAGCTTCAAGATCCTAGCCAACGTCCCAACAAAAAGAAGCGTTACCATCGCCACACGCAACGCCAAATTCAAGAGCTCGAATCATTCTTTAAGGAATGTCCTCATCCAGATGATAAGCAACGAAAAGAGTTGAGCCGTGATCTCAATTTAGAGCCTCTTCAAGTTAAGTTTTGGTTCCAAAACAAACGCACACAGATGAAGGCACAAAGTGAGAGGCATGAGAACCAGATTCTAAAGTCAGACAATGACAAGCTCAGAGCAGAGAACAATAGATACAAAGAAGCTCTAAGCAATGCTACATGCCCTAACTGTGGCGGTCCAGCTGCTATTGGAGAAATGTCTTTTGACGAACAACATCTCAGGATCGAAAATGCTCGGCTCCGCGAAGAGATTGATAGGATCTCTGCTATTGCTGCGAAATACGTTGGGAAGCCGTTAGGATCGTCTTTCGCTCCACTAGCGATCCACGCGCCTTCTCGTTCGCTTGATCTTGAAGTTGGAAACTTTGGGAACCAGACAGGCTTTGTAGGAGAAATGTATGGAACAGGGGACATTTTGAGGTCAGTTTCGATTCCTTCTGAGACTGATAAGCCTATAATCGTGGAGCTAGCGGTTGCAGCTATGGAGGAACTCGTGAGAATGGCTCAAACTGGAGATCCTTTATGGCTTTCAACCGATAATTCAGTCGAGATTCTCAACGAAGAAGAGTATTTCAGAACGTTTCCGAGAGGAATTGGACCAAAGCCATTAGGATTAAGATCAGAGGCGTCAAGACAATCTGCAGTTGTTATAATGAATCACATCAATCTCGTTGAGATTCTCATGGATGTGAATCAATGGTCTTGTGTTTTCTCTGGGATTGTGTCAAGAGCCTTGACACTTGAAGTTCTTTCAACTGGAGTTGCTGGGAACTACAACGGTGCTTTACAAGTGATGACAGCTGAGTTTCAAGTTCCATCACCCCTAGTCCCAACGCGTGAGAACTACTTTGTGAGATACTGCAAACAACACAGTGACGGCTCTTGGGCTGTGGTTGATGTCTCTTTGGACAGCCTTAGACCAAGTACTCCAATCTTAAGAACTAGAAGAAGGCCTTCAGGTTGTCTGATTCAAGAATTGCCTAATGGTTATTCTAAGGTTACATGGATAGAGCATATGGAGGTAGATGATAGATCAGTTCACAACATGTATAAACCGTTGGTTCAGTCCGGTTTAGCTTTCGGTGCGAAACGTTGGGTGGCTACACTCGAACGACAATGCGAGCGGCTTGCTAGCTCCATGGCCAGCAACATTCCTGGTGATCTTTCCGTGATAACGAGTCCTGAAGGAAGGAAGAGTATGTTGAAGCTAGCTGAGAGAATGGTTATGAGTTTCTGCAGTGGTGTTGGCGCGTCGACTGCACACGCTTGGACAACAATGTCGACAACAGGATCCGATGATGTTCGGGTCATGACCCGCAAGAGTATGGATGATCCAGGAAGACCTCCGGGTATTGTTCTTAGTGCAGCTACTTCATTCTGGATCCCAGTTGCTCCCAAACGTGTTTTTGATTTCCTCCGTGACGAAAATTCAAGAAAAGAGTGGGATATTCTGTCAAATGGAGGTATGGTTCAGGAAATGGCTCATATAGCCAATGGTCATGAACCTGGAAACTGTGTCTCCTTGCTCCGAGTCAATAGTGGAAACTCGAGCCAGAGCAACATGTTGATTCTACAAGAGAGCTGTACAGATGCATCAGGATCGTATGTGATTTACGCGCCAGTGGATATAGTGGCGATGAATGTGGTTCTAAGCGGTGGAGATCCTGATTACGTGGCGTTGTTGCCGTCTGGTTTTGCTATTTTACCGGATGGTTCGGTTGGAGGAGGAGATGGGAATCAGCATCAGGAAATGGTTTCTACTACTTCTTCTGGGAGTTGTGGTGGTTCGCTTTTAACCGTTGCGTTTCAGATTCTTGTTGACTCTGTTCCTACAGCTAAACTCTCACTTGGCTCGGTGGCTACGGTTAATAGTCTGATCAAATGTACGGTGGAGAGGATTAAAGCTGCTGTTTCTTGTGATGTTGGAGGAGGAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009790 GO:0009791 GO:0009793 GO:0009845 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0061458 GO:0065007 GO:0080090 GO:0090351 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

743

Amino Acids

81.53

Weight (kDa)

5.62

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	63 - 118	8.6e-18	Homeodomain
START	PF01852	254 - 473	3e-52	START domain
PDF2_C	PF25797	491 - 737	7.3e-103	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04890 AT4G04890 AT4G21750 AT4G21750 AT4G21750 AT4G21750
fragaria_vesca	FvH4_3g02520 FvH4_3g02520 FvH4_3g02520 FvH4_3g02520
malus_domestica	MD05G1342200.v1.1 MD10G1315800.v1.1
prunus_persica	Prupe.4G024800_v2.0.a1 Prupe.4G024800_v2.0.a1 Prupe.4G024800_v2.0.a1
pyrus_communis	pycom05g31150
rosa_chinensis	RchiOBHm_Chr5g0003831
rosa_laevigata	RLG00000031179
rosa_multiflora	Rmu_sc0010187.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072160
rosa_rugosa	Rorug04G0407000 Rorug04G0407100 Rorug04G0407100 Rorug04G0407200 Rorug04G0407300 Rorug04G0407400 Rorug04G0407400 Rorug04G0407500 Rorug04G0407500
rosa_samantha	Rh5AG034500 Rh5BG032800 Rh5CG036900 Rh5DG033200
rosa_wichuraiana	Rw5G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	944
AasI	GACNNNNNNGTC	1 cut(s)	1570
Acc65I	GGTACC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	119
AccBSI	CCGCTC	1 cut(s)	1417
AccI	GTMKAC	2 cut(s)	1547, 1574
AccII	CGCG	5 cut(s)	537, 623, 1129, 1544, 1910
AciI	CCGC	6 cut(s)	468, 535, 764, 1417, 1609, 1947
AclI	AACGTT	2 cut(s)	872, 1384
AcoI	YGGCCR	1 cut(s)	1434
AcsI	RAATTY	2 cut(s)	219, 1720
AcuI	CTGAAG	2 cut(s)	1233, 1497
AcyI	GRCGYC	1 cut(s)	920
AdeI	CACNNNGTG	1 cut(s)	362
AfaI	GTAC	6 cut(s)	5, 58, 121, 1219, 1879, 2179
AfiI	CCNNNNNNNGG	1 cut(s)	464
AflII	CTTAAG	1 cut(s)	1228
AflIII	ACRYGT	5 cut(s)	15, 1127, 1338, 1693, 1854
AgeI	ACCGGT	1 cut(s)	83
AjnI	CCWGG	3 cut(s)	1447, 1627, 1798
AloI	GAACNNNNNNTCC	2 cut(s)	1746, 1778
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	4 cut(s)	101, 728, 1198, 1816
Ama87I	CYCGRG	1 cut(s)	1840
AoxI	GGCC	2 cut(s)	1244, 1434
ApeKI	GCWGC	5 cut(s)	476, 566, 770, 1658, 2198
ApoI	RAATTY	2 cut(s)	219, 1720
AsiGI	ACCGGT	1 cut(s)	83
Asp700I	GAANNNNTTC	2 cut(s)	156, 1246
Asp718I	GGTACC	1 cut(s)	119
AspLEI	GCGC	3 cut(s)	625, 1544, 1912
AspS9I	GGNCC	2 cut(s)	470, 890
AsuC2I	CCSGG	1 cut(s)	1641
AsuHPI	GGTGA	4 cut(s)	73, 161, 1104, 1463
AsuNHI	GCTAGC	3 cut(s)	760, 1424, 1501
AvaI	CYCGRG	1 cut(s)	1840
AvaII	GGWCC	2 cut(s)	470, 890
BaeI	ACNNNNGTAYC	2 cut(s)	111, 144
BalI	TGGCCA	1 cut(s)	1436
BamHI	GGATCC	2 cut(s)	1583, 1674
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	785
BbsI	GAAGAC	1 cut(s)	1639
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	5 cut(s)	463, 553, 782, 1670, 2185
BccI	CCATC	6 cut(s)	15, 36, 207, 1117, 1997, 2018
BceAI	ACGGC	4 cut(s)	273, 571, 1186, 1963
BcgI	CGANNNNNNTGC	4 cut(s)	1403, 1437, 1875, 1909
BciT130I	CCWGG	3 cut(s)	1449, 1629, 1800
BclI	TGATCA	1 cut(s)	2169
BcnI	CCSGG	1 cut(s)	1641
BcoDI	GTCTC	4 cut(s)	101, 728, 1198, 1816
BfaI	CTAG	7 cut(s)	168, 611, 761, 1118, 1236, 1425, 1502
BfmI	CTRYAG	3 cut(s)	933, 1528, 2124
BfrI	CTTAAG	1 cut(s)	1228
BisI	GCNGC	6 cut(s)	477, 567, 771, 1418, 1659, 2199
BlsI	GCNGC	6 cut(s)	478, 568, 772, 1419, 1660, 2200
BmcAI	AGTACT	1 cut(s)	1219
Bme1390I	CCNGG	4 cut(s)	1449, 1629, 1641, 1800
Bme18I	GGWCC	2 cut(s)	470, 890
BmeT110I	CYCGRG	1 cut(s)	1840
BmgT120I	GGNCC	2 cut(s)	470, 890
BmiI	GGNNCC	6 cut(s)	121, 329, 533, 665, 1585, 1676
BmrFI	CCNGG	4 cut(s)	1449, 1629, 1641, 1800
BmrI	ACTGGG	1 cut(s)	1673
BmsI	GCATC	3 cut(s)	1873, 1895, 2044
BmtI	GCTAGC	3 cut(s)	764, 1428, 1505
BmuI	ACTGGG	1 cut(s)	1673
BpiI	GAAGAC	1 cut(s)	1639
BplI	GAGNNNNNCTC	2 cut(s)	781, 813
BpmI	CTGGAG	2 cut(s)	825, 1071
BpuMI	CCSGG	1 cut(s)	1641
BsaAI	YACGTR	1 cut(s)	1966
BsaBI	GATNNNNATC	3 cut(s)	910, 984, 2028
BsaHI	GRCGYC	1 cut(s)	920
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	1431
BsaWI	WCCGGW	3 cut(s)	83, 1361, 1999
BsaXI	ACNNNNNCTCC	6 cut(s)	1746, 1776, 1796, 1826, 2059, 2089
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	4 cut(s)	808, 1054, 1679, 1913
Bse3DI	GCAATG	1 cut(s)	451
Bse8I	GATNNNNATC	3 cut(s)	910, 984, 2028
BseBI	CCWGG	3 cut(s)	1449, 1629, 1800
BseDI	CCNNGG	1 cut(s)	1431
BseGI	GGATG	5 cut(s)	7, 256, 985, 1627, 2008
BseJI	GATNNNNATC	3 cut(s)	910, 984, 2028
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMI	GCAATG	1 cut(s)	451
BseMII	CTCAG	6 cut(s)	126, 421, 526, 723, 1086, 1497
BseNI	ACTGG	4 cut(s)	808, 1054, 1679, 1913
BseRI	GAGGAG	2 cut(s)	2031, 2034
BseXI	GCAGC	5 cut(s)	463, 553, 782, 1670, 2185
BseYI	CCCAGC	1 cut(s)	1058
BsgI	GTGCAG	2 cut(s)	1536, 1677
Bsh1236I	CGCG	5 cut(s)	537, 623, 1129, 1544, 1910
BshFI	GGCC	2 cut(s)	1246, 1436
BshNI	GGYRCC	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	1840
BsiSI	CCGG	4 cut(s)	84, 1362, 1640, 2000
BslFI	GGGAC	3 cut(s)	162, 716, 1106
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	4 cut(s)	101, 728, 1198, 1816
BsmFI	GGGAC	3 cut(s)	162, 716, 1106
BsnI	GGCC	2 cut(s)	1246, 1436
Bso31I	GGTCTC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	1840
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp1407I	TGTACA	1 cut(s)	1877
Bsp19I	CCATGG	1 cut(s)	1431
BspACI	CCGC	6 cut(s)	468, 535, 764, 1417, 1609, 1947
BspANI	GGCC	2 cut(s)	1246, 1436
BspCNI	CTCAG	6 cut(s)	127, 420, 525, 724, 1087, 1498
BspFNI	CGCG	5 cut(s)	537, 623, 1129, 1544, 1910
BspHI	TCATGA	2 cut(s)	1602, 1792
BspLI	GGNNCC	6 cut(s)	121, 329, 533, 665, 1585, 1676
BspMAI	CTGCAG	2 cut(s)	937, 1532
BspOI	GCTAGC	3 cut(s)	764, 1428, 1505
BspQI	GCTCTTC	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	119
BspTI	CTTAAG	1 cut(s)	1228
BspTNI	GGTCTC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	1417
BsrDI	GCAATG	1 cut(s)	451
BsrFI	RCCGGY	1 cut(s)	83
BsrGI	TGTACA	1 cut(s)	1877
BsrI	ACTGG	4 cut(s)	808, 1054, 1679, 1913
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	1431
BssNI	GRCGYC	1 cut(s)	920
BssSI	CACGAG	1 cut(s)	785
BssT1I	CCWWGG	1 cut(s)	1431
Bst2BI	CACGAG	1 cut(s)	785
Bst2UI	CCWGG	3 cut(s)	1449, 1629, 1800
Bst4CI	ACNGT	8 cut(s)	464, 1073, 1166, 1350, 1808, 2092, 2158, 2182
Bst6I	CTCTTC	5 cut(s)	147, 315, 534, 852, 1481
BstACI	GRCGYC	1 cut(s)	920
BstAFI	CTTAAG	1 cut(s)	1228
BstAUI	TGTACA	1 cut(s)	1877
BstBAI	YACGTR	1 cut(s)	1966
BstC8I	GCNNGC	6 cut(s)	762, 1415, 1422, 1426, 1438, 1503
BstDSI	CCRYGG	1 cut(s)	1431
BstF5I	GGATG	5 cut(s)	7, 256, 985, 1627, 2008
BstFNI	CGCG	5 cut(s)	537, 623, 1129, 1544, 1910
BstHHI	GCGC	3 cut(s)	625, 1544, 1912
BstMAI	GTCTC	4 cut(s)	101, 728, 1198, 1816
BstMWI	GCNNNNNNNGC	7 cut(s)	566, 611, 620, 770, 1376, 1550, 1781
BstNI	CCWGG	3 cut(s)	1449, 1629, 1800
BstNSI	RCATGY	4 cut(s)	19, 456, 1342, 1858
BstSCI	CCNGG	4 cut(s)	1447, 1627, 1639, 1798
BstSFI	CTRYAG	3 cut(s)	933, 1528, 2124
BstUI	CGCG	5 cut(s)	537, 623, 1129, 1544, 1910
BstV1I	GCAGC	5 cut(s)	463, 553, 782, 1670, 2185
BstV2I	GAAGAC	1 cut(s)	1639
BstX2I	RGATCY	6 cut(s)	163, 552, 808, 1583, 1674, 1954
BstYI	RGATCY	6 cut(s)	163, 552, 808, 1583, 1674, 1954
BsuRI	GGCC	2 cut(s)	1246, 1436
BtgI	CCRYGG	1 cut(s)	1431
BtgZI	GCGATG	2 cut(s)	185, 1943
BtsCI	GGATG	5 cut(s)	7, 256, 985, 1627, 2008
BtsI	GCAGTG	1 cut(s)	1537
BtsIMutI	CAGTG	3 cut(s)	1171, 1537, 1920
Cac8I	GCNNGC	6 cut(s)	762, 1415, 1422, 1426, 1438, 1503
CciI	TCATGA	2 cut(s)	1602, 1792
CfoI	GCGC	3 cut(s)	625, 1544, 1912
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	470, 890
CseI	GACGC	2 cut(s)	909, 1533
Csp6I	GTAC	6 cut(s)	4, 57, 120, 1218, 1878, 2178
CspAI	ACCGGT	1 cut(s)	83
CviQI	GTAC	6 cut(s)	4, 57, 120, 1218, 1878, 2178
DraIII	CACNNNGTG	1 cut(s)	362
DrdI	GACNNNNNNGTC	1 cut(s)	1570
DseDI	GACNNNNNNGTC	1 cut(s)	1570
EaeI	YGGCCR	1 cut(s)	1434
Eam1104I	CTCTTC	5 cut(s)	147, 315, 534, 852, 1481
EarI	CTCTTC	5 cut(s)	147, 315, 534, 852, 1481
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	1431
Eco147I	AGGCCT	1 cut(s)	1246
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	101
Eco47I	GGWCC	2 cut(s)	470, 890
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	1233, 1497
Eco88I	CYCGRG	1 cut(s)	1840
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	3 cut(s)	1447, 1627, 1798
EcoT14I	CCWWGG	1 cut(s)	1431
EcoT22I	ATGCAT	1 cut(s)	1888
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	1431
FalI	AAGNNNNNCTT	2 cut(s)	1231, 1263
FaqI	GGGAC	3 cut(s)	162, 716, 1106
FauI	CCCGC	1 cut(s)	1616
FauNDI	CATATG	2 cut(s)	33, 1308
FbaI	TGATCA	1 cut(s)	2169
FblI	GTMKAC	2 cut(s)	1547, 1574
Fnu4HI	GCNGC	6 cut(s)	477, 567, 771, 1418, 1659, 2199
FokI	GGATG	4 cut(s)	243, 992, 1634, 2015
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	6 cut(s)	477, 567, 771, 1418, 1659, 2199
FspBI	CTAG	7 cut(s)	168, 611, 761, 1118, 1236, 1425, 1502
GlaI	GCGC	3 cut(s)	624, 1543, 1911
GluI	GCNGC	6 cut(s)	477, 567, 771, 1418, 1659, 2199
GsaI	CCCAGC	1 cut(s)	1062
GsuI	CTGGAG	2 cut(s)	825, 1071
HaeIII	GGCC	2 cut(s)	1246, 1436
HapII	CCGG	4 cut(s)	84, 1362, 1640, 2000
HgaI	GACGC	2 cut(s)	909, 1533
HhaI	GCGC	3 cut(s)	625, 1544, 1912
Hin1I	GRCGYC	1 cut(s)	920
Hin6I	GCGC	3 cut(s)	623, 1542, 1910
HinP1I	GCGC	3 cut(s)	623, 1542, 1910
HincII	GTYRAC	3 cut(s)	1548, 1575, 2113
HindII	GTYRAC	3 cut(s)	1548, 1575, 2113
HpaII	CCGG	4 cut(s)	84, 1362, 1640, 2000
HphI	GGTGA	4 cut(s)	73, 161, 1104, 1463
Hpy166II	GTNNAC	4 cut(s)	1333, 1548, 1575, 2113
Hpy8I	GTNNAC	4 cut(s)	1333, 1548, 1575, 2113
Hpy99I	CGWCG	1 cut(s)	1549
HpyAV	CCTTC	8 cut(s)	153, 346, 636, 738, 1236, 1257, 1472, 1476
HpyCH4III	ACNGT	8 cut(s)	464, 1073, 1166, 1350, 1808, 2092, 2158, 2182
HpyCH4IV	ACGT	6 cut(s)	175, 576, 872, 1384, 1693, 1965
HpyCH4V	TGCA	7 cut(s)	770, 935, 1155, 1530, 1553, 1658, 1886
HpyF10VI	GCNNNNNNNGC	7 cut(s)	566, 611, 620, 770, 1376, 1550, 1781
HpySE526I	ACGT	6 cut(s)	175, 576, 872, 1384, 1693, 1965
Hsp92I	GRCGYC	1 cut(s)	920
HspAI	GCGC	3 cut(s)	623, 1542, 1910
KpnI	GGTACC	1 cut(s)	123
Ksp22I	TGATCA	1 cut(s)	2169
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	7 cut(s)	537, 610, 757, 1433, 1690, 1824, 2225
Lsp1109I	GCAGC	5 cut(s)	463, 553, 782, 1670, 2185
LweI	GCATC	3 cut(s)	1873, 1895, 2044
MaeI	CTAG	7 cut(s)	168, 611, 761, 1118, 1236, 1425, 1502
MaeII	ACGT	6 cut(s)	175, 576, 872, 1384, 1693, 1965
MaeIII	GTNAC	5 cut(s)	127, 194, 1166, 1291, 1712
MbiI	CCGCTC	1 cut(s)	1417
MflI	RGATCY	6 cut(s)	163, 552, 808, 1583, 1674, 1954
MhlI	GDGCHC	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	1436
MluCI	AATT	6 cut(s)	219, 298, 832, 885, 1268, 1720
MluI	ACGCGT	1 cut(s)	1127
MluNI	TGGCCA	1 cut(s)	1436
MlyI	GAGTC	3 cut(s)	1480, 1833, 2108
MmeI	TCCRAC	3 cut(s)	631, 1993, 2197
Mox20I	TGGCCA	1 cut(s)	1436
Mph1103I	ATGCAT	1 cut(s)	1888
MroXI	GAANNNNTTC	2 cut(s)	156, 1246
MscI	TGGCCA	1 cut(s)	1436
MseI	TTAA	7 cut(s)	243, 318, 908, 1229, 2087, 2160, 2193
MslI	CAYNNNNRTG	3 cut(s)	261, 347, 980
Msp20I	TGGCCA	1 cut(s)	1436
MspA1I	CMGCKG	2 cut(s)	476, 1094
MspCI	CTTAAG	1 cut(s)	1228
MspI	CCGG	4 cut(s)	84, 1362, 1640, 2000
MspR9I	CCNGG	4 cut(s)	1449, 1629, 1641, 1800
MvaI	CCWGG	3 cut(s)	1449, 1629, 1800
MvnI	CGCG	5 cut(s)	537, 623, 1129, 1544, 1910
MwoI	GCNNNNNNNGC	7 cut(s)	566, 611, 620, 770, 1376, 1550, 1781
NciI	CCSGG	1 cut(s)	1641
NcoI	CCATGG	1 cut(s)	1431
NdeI	CATATG	2 cut(s)	33, 1308
NheI	GCTAGC	3 cut(s)	760, 1424, 1501
NlaIV	GGNNCC	6 cut(s)	121, 329, 533, 665, 1585, 1676
NmeAIII	GCCGAG	2 cut(s)	116, 508
NmuCI	GTSAC	3 cut(s)	127, 1166, 1712
NsiI	ATGCAT	1 cut(s)	1888
NspI	RCATGY	4 cut(s)	19, 456, 1342, 1858
PaeR7I	CTCGAG	1 cut(s)	1840
PagI	TCATGA	2 cut(s)	1602, 1792
PceI	AGGCCT	1 cut(s)	1246
PciI	ACATGT	3 cut(s)	15, 1338, 1854
PciSI	GCTCTTC	1 cut(s)	147
PdmI	GAANNNNTTC	2 cut(s)	156, 1246
PflFI	GACNNNGTC	1 cut(s)	112
PfoI	TCCNGGA	1 cut(s)	1627
PinAI	ACCGGT	1 cut(s)	83
PkrI	GCNGC	6 cut(s)	478, 568, 772, 1419, 1660, 2200
PleI	GAGTC	3 cut(s)	1479, 1832, 2108
PpsI	GAGTC	3 cut(s)	1479, 1832, 2108
Ppu21I	YACGTR	1 cut(s)	1966
PscI	ACATGT	3 cut(s)	15, 1338, 1854
PsiI	TTATAA	1 cut(s)	944
Psp124BI	GAGCTC	1 cut(s)	231
Psp1406I	AACGTT	2 cut(s)	872, 1384
Psp6I	CCWGG	3 cut(s)	1447, 1627, 1798
PspFI	CCCAGC	1 cut(s)	1058
PspGI	CCWGG	3 cut(s)	1447, 1627, 1798
PspN4I	GGNNCC	6 cut(s)	121, 329, 533, 665, 1585, 1676
PspPI	GGNCC	2 cut(s)	470, 890
PspXI	VCTCGAGB	1 cut(s)	1840
PsrI	GAACNNNNNNTAC	2 cut(s)	410, 442
PstI	CTGCAG	2 cut(s)	937, 1532
PsuI	RGATCY	6 cut(s)	163, 552, 808, 1583, 1674, 1954
PsyI	GACNNNGTC	1 cut(s)	112
PvuII	CAGCTG	2 cut(s)	476, 1094
RsaI	GTAC	6 cut(s)	5, 58, 121, 1219, 1879, 2179
RsaNI	GTAC	6 cut(s)	4, 57, 120, 1218, 1878, 2178
RseI	CAYNNNNRTG	3 cut(s)	261, 347, 980
SacI	GAGCTC	1 cut(s)	231
SalI	GTCGAC	2 cut(s)	1546, 1573
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	7 cut(s)	243, 318, 908, 1229, 2087, 2160, 2193
SatI	GCNGC	6 cut(s)	477, 567, 771, 1418, 1659, 2199
Sau96I	GGNCC	2 cut(s)	470, 890
ScaI	AGTACT	1 cut(s)	1219
SchI	GAGTC	3 cut(s)	1480, 1833, 2108
ScrFI	CCNGG	4 cut(s)	1449, 1629, 1641, 1800
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	3 cut(s)	1873, 1895, 2044
SfcI	CTRYAG	3 cut(s)	933, 1528, 2124
Sfr274I	CTCGAG	1 cut(s)	1840
SinI	GGWCC	2 cut(s)	470, 890
SlaI	CTCGAG	1 cut(s)	1840
SmiMI	CAYNNNNRTG	3 cut(s)	261, 347, 980
SmlI	CTYRAG	2 cut(s)	1228, 1840
SmoI	CTYRAG	2 cut(s)	1228, 1840
Sse9I	AATT	6 cut(s)	219, 298, 832, 885, 1268, 1720
SseBI	AGGCCT	1 cut(s)	1246
SsiI	CCGC	6 cut(s)	468, 535, 764, 1417, 1609, 1947
SspMI	CTAG	7 cut(s)	168, 611, 761, 1118, 1236, 1425, 1502
SstI	GAGCTC	1 cut(s)	231
StuI	AGGCCT	1 cut(s)	1246
StyD4I	CCNGG	4 cut(s)	1447, 1627, 1639, 1798
StyI	CCWWGG	1 cut(s)	1431
TaaI	ACNGT	8 cut(s)	464, 1073, 1166, 1350, 1808, 2092, 2158, 2182
TaiI	ACGT	6 cut(s)	178, 579, 875, 1387, 1696, 1968
TaqI	TCGA	9 cut(s)	39, 231, 519, 722, 840, 1401, 1547, 1574, 1841
TasI	AATT	6 cut(s)	219, 298, 832, 885, 1268, 1720
TatI	WGTACW	2 cut(s)	1217, 1877
TauI	GCSGC	1 cut(s)	1420
Tru1I	TTAA	7 cut(s)	243, 318, 908, 1229, 2087, 2160, 2193
Tru9I	TTAA	7 cut(s)	243, 318, 908, 1229, 2087, 2160, 2193
TscAI	CASTG	3 cut(s)	1171, 1537, 1920
TseFI	GTSAC	3 cut(s)	127, 1166, 1712
TseI	GCWGC	5 cut(s)	476, 566, 770, 1658, 2198
Tsp45I	GTSAC	3 cut(s)	127, 1166, 1712
TspDTI	ATGAA	5 cut(s)	365, 962, 1656, 1809, 1946
TspGWI	ACGGA	2 cut(s)	1450, 1700
TspRI	CASTG	3 cut(s)	1171, 1537, 1920
Tth111I	GACNNNGTC	1 cut(s)	112
Vha464I	CTTAAG	1 cut(s)	1228
VpaK11BI	GGWCC	2 cut(s)	470, 890
XapI	RAATTY	2 cut(s)	219, 1720
XceI	RCATGY	4 cut(s)	19, 456, 1342, 1858
XhoI	CTCGAG	1 cut(s)	1840
XmiI	GTMKAC	2 cut(s)	1547, 1574
XmnI	GAANNNNTTC	2 cut(s)	156, 1246
XspI	CTAG	7 cut(s)	168, 611, 761, 1118, 1236, 1425, 1502
ZrmI	AGTACT	1 cut(s)	1219
Zsp2I	ATGCAT	1 cut(s)	1888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.