Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003728

Physical Location & Seq

Genomic Coordinates Reverse (-)

57061317 .. 57061841

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0407200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCCGAGCGACAAGACAGTCGGCCGGGGCGACGACGCCTTCAACACCTTCTTCTCCGAGACCGGCGCTGGTAAGCACGTCCCACGCGCCATCTTCGTCGACCTCGAGCCCACCGTCATCGATGAGGTCCGCACCGGAACCTACCACCAGCTCTTCCACCCCGAGCAGCTCATCTCCGGCAAGGAGGACGCTGCCAACAACTTCGCCCGTGGTCACTACACCATCGGCAAAGAGATCGTCAATCTATGCCTGGATCAGATCCGAAAGCTCGCTGATAACTGCACTGGGCTCCAGGGATCCCTGGTCTTCAATGCCGTCAGTGGCGGTACTGGGTCGAGTCTCGGGTCGCTTCTGCTGGAGAGGCTTTCTGTGGACAATGGGAAAAAGTTCATGCTCGGATTCACTGTGTATCATTCTCCTAAGGTTTCTACGTCTGTTGTAAAGCCCTATAACAATGTGCTCTCCACTCATTTGAGCACACTGATGTGTCTATGTTGCTCAATTTCAAATTTTTTTTGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009790 GO:0009791 GO:0009793 GO:0009845 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0061458 GO:0065007 GO:0080090 GO:0090351 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

174

Amino Acids

18.87

Weight (kDa)

6.57

Isoelectric Point (pI)

19.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	13 - 157	2e-36	Tubulin/FtsZ family, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04890 AT4G04890 AT4G21750 AT4G21750 AT4G21750 AT4G21750
fragaria_vesca	FvH4_3g02520 FvH4_3g02520 FvH4_3g02520 FvH4_3g02520
malus_domestica	MD05G1342200.v1.1 MD10G1315800.v1.1
prunus_persica	Prupe.4G024800_v2.0.a1 Prupe.4G024800_v2.0.a1 Prupe.4G024800_v2.0.a1
pyrus_communis	pycom05g31150
rosa_chinensis	RchiOBHm_Chr5g0003831
rosa_laevigata	RLG00000031179
rosa_multiflora	Rmu_sc0010187.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072160
rosa_rugosa	Rorug04G0407000 Rorug04G0407100 Rorug04G0407100 Rorug04G0407200 Rorug04G0407300 Rorug04G0407400 Rorug04G0407400 Rorug04G0407500 Rorug04G0407500
rosa_samantha	Rh5AG034500 Rh5BG032800 Rh5CG036900 Rh5DG033200
rosa_wichuraiana	Rw5G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	87
AciI	CCGC	2 cut(s)	130, 324
AclWI	GGATC	4 cut(s)	253, 261, 291, 304
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	508
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	328
AgsI	TTSAA	3 cut(s)	43, 310, 507
AjiI	CACGTC	1 cut(s)	79
AjnI	CCWGG	3 cut(s)	249, 291, 300
AleI	CACNNNNGTG	1 cut(s)	484
AluBI	AGCT	3 cut(s)	151, 169, 268
AluI	AGCT	3 cut(s)	151, 169, 268
Alw21I	GWGCWC	2 cut(s)	462, 479
Alw26I	GTCTC	2 cut(s)	53, 344
AlwI	GGATC	4 cut(s)	253, 261, 291, 304
Ama87I	CYCGRG	3 cut(s)	104, 161, 341
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	166, 191
ApoI	RAATTY	1 cut(s)	508
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
Asp700I	GAANNNNTTC	1 cut(s)	386
AspLEI	GCGC	2 cut(s)	68, 89
AspS9I	GGNCC	1 cut(s)	127
AsuC2I	CCSGG	1 cut(s)	26
AvaI	CYCGRG	3 cut(s)	104, 161, 341
AvaII	GGWCC	1 cut(s)	127
AxyI	CCTNAGG	1 cut(s)	420
BamHI	GGATCC	1 cut(s)	296
BanII	GRGCYC	2 cut(s)	111, 291
BbsI	GAAGAC	1 cut(s)	298
Bbv12I	GWGCWC	2 cut(s)	462, 479
BbvI	GCAGC	2 cut(s)	178, 178
BccI	CCATC	2 cut(s)	98, 230
BceAI	ACGGC	1 cut(s)	299
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BciT130I	CCWGG	3 cut(s)	251, 293, 302
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	53, 344
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	2 cut(s)	167, 192
BlsI	GCNGC	2 cut(s)	168, 193
Bme1390I	CCNGG	4 cut(s)	26, 251, 293, 302
Bme18I	GGWCC	1 cut(s)	127
BmeT110I	CYCGRG	3 cut(s)	104, 161, 341
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	3 cut(s)	139, 290, 298
BmrFI	CCNGG	4 cut(s)	26, 251, 293, 302
BmrI	ACTGGG	2 cut(s)	294, 339
BmuI	ACTGGG	2 cut(s)	294, 339
BpiI	GAAGAC	1 cut(s)	298
BpmI	CTGGAG	2 cut(s)	275, 377
BpuMI	CCSGG	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	4 cut(s)	25, 208, 292, 300
BsaWI	WCCGGW	1 cut(s)	134
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	289, 334
Bse21I	CCTNAGG	1 cut(s)	420
BseBI	CCWGG	3 cut(s)	251, 293, 302
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	4 cut(s)	25, 208, 292, 300
BseNI	ACTGG	2 cut(s)	289, 334
BseX3I	CGGCCG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	178, 178
BsgI	GTGCAG	1 cut(s)	265
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	24
BshVI	ATCGAT	1 cut(s)	120
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	2 cut(s)	462, 479
BsiHKCI	CYCGRG	3 cut(s)	104, 161, 341
BsiSI	CCGG	4 cut(s)	25, 63, 135, 177
BslFI	GGGAC	1 cut(s)	65
BsmAI	GTCTC	2 cut(s)	53, 344
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	24
Bso31I	GGTCTC	1 cut(s)	53
BsoBI	CYCGRG	3 cut(s)	104, 161, 341
Bsp1286I	GDGCHC	4 cut(s)	111, 291, 462, 479
Bsp143I	GATC	4 cut(s)	234, 253, 258, 296
BspACI	CCGC	2 cut(s)	130, 324
BspANI	GGCC	1 cut(s)	24
BspDI	ATCGAT	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	3 cut(s)	139, 290, 298
BspPI	GGATC	4 cut(s)	253, 261, 291, 304
BspQI	GCTCTTC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	289, 334
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	4 cut(s)	25, 208, 292, 300
BssMI	GATC	4 cut(s)	234, 253, 258, 296
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	3 cut(s)	251, 293, 302
Bst4CI	ACNGT	3 cut(s)	19, 115, 406
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	420
BstDSI	CCRYGG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	68, 89
BstKTI	GATC	4 cut(s)	237, 256, 261, 299
BstMAI	GTCTC	2 cut(s)	53, 344
BstMBI	GATC	4 cut(s)	234, 253, 258, 296
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNI	CCWGG	3 cut(s)	251, 293, 302
BstSCI	CCNGG	4 cut(s)	24, 249, 291, 300
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	178, 178
BstV2I	GAAGAC	1 cut(s)	298
BstX2I	RGATCY	2 cut(s)	258, 296
BstYI	RGATCY	2 cut(s)	258, 296
BstZI	CGGCCG	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	120
Bsu36I	CCTNAGG	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	24
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	208
BtrI	CACGTC	1 cut(s)	79
BtsIMutI	CAGTG	4 cut(s)	282, 325, 402, 479
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	2 cut(s)	68, 89
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	127
ClaI	ATCGAT	1 cut(s)	120
CseI	GACGC	2 cut(s)	44, 197
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	1 cut(s)	391
CviJI	RGCY	8 cut(s)	24, 109, 151, 169, 268, 289, 364, 445
CviKI_1	RGCY	8 cut(s)	24, 109, 151, 169, 268, 289, 364, 445
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	4 cut(s)	236, 255, 260, 298
DpnII	GATC	4 cut(s)	234, 253, 258, 296
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	22
EagI	CGGCCG	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
EclXI	CGGCCG	1 cut(s)	22
Eco24I	GRGCYC	2 cut(s)	111, 291
Eco31I	GGTCTC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	127
Eco52I	CGGCCG	1 cut(s)	22
Eco81I	CCTNAGG	1 cut(s)	420
Eco88I	CYCGRG	3 cut(s)	104, 161, 341
EcoRII	CCWGG	3 cut(s)	249, 291, 300
EcoT38I	GRGCYC	2 cut(s)	111, 291
FaeI	CATG	1 cut(s)	394
FaiI	YATR	4 cut(s)	247, 392, 450, 493
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	1 cut(s)	390
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	167, 192
FriOI	GRGCYC	2 cut(s)	111, 291
Fsp4HI	GCNGC	2 cut(s)	167, 192
GlaI	GCGC	2 cut(s)	67, 88
GluI	GCNGC	2 cut(s)	167, 192
GsuI	CTGGAG	2 cut(s)	275, 377
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	4 cut(s)	25, 63, 135, 177
HgaI	GACGC	2 cut(s)	44, 197
HhaI	GCGC	2 cut(s)	68, 89
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	1 cut(s)	394
Hin6I	GCGC	2 cut(s)	66, 87
HinP1I	GCGC	2 cut(s)	66, 87
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	337, 399
HpaII	CCGG	4 cut(s)	25, 63, 135, 177
Hpy166II	GTNNAC	2 cut(s)	100, 373
Hpy188I	TCNGA	4 cut(s)	58, 258, 263, 398
Hpy8I	GTNNAC	2 cut(s)	100, 373
Hpy99I	CGWCG	3 cut(s)	35, 38, 101
HpyAV	CCTTC	2 cut(s)	49, 58
HpyCH4III	ACNGT	3 cut(s)	19, 115, 406
HpyCH4IV	ACGT	2 cut(s)	78, 431
HpyCH4V	TGCA	1 cut(s)	282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	2 cut(s)	78, 431
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	394
HspAI	GCGC	2 cut(s)	66, 87
Kzo9I	GATC	4 cut(s)	234, 253, 258, 296
LguI	GCTCTTC	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	294
Lsp1109I	GCAGC	2 cut(s)	178, 178
MaeII	ACGT	2 cut(s)	78, 431
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	4 cut(s)	236, 255, 260, 298
MboI	GATC	4 cut(s)	234, 253, 258, 296
MboII	GAAGA	4 cut(s)	43, 85, 145, 298
MflI	RGATCY	2 cut(s)	258, 296
MhlI	GDGCHC	4 cut(s)	111, 291, 462, 479
MluCI	AATT	2 cut(s)	501, 508
MlyI	GAGTC	1 cut(s)	346
MnlI	CCTC	4 cut(s)	113, 118, 178, 354
MroXI	GAANNNNTTC	1 cut(s)	386
MseI	TTAA	1 cut(s)	523
MslI	CAYNNNNRTG	2 cut(s)	482, 484
MspI	CCGG	4 cut(s)	25, 63, 135, 177
MspR9I	CCNGG	4 cut(s)	26, 251, 293, 302
MvaI	CCWGG	3 cut(s)	251, 293, 302
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	361
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	4 cut(s)	234, 253, 258, 296
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	3 cut(s)	139, 290, 298
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	212
OliI	CACNNNNGTG	1 cut(s)	484
PaeR7I	CTCGAG	1 cut(s)	104
PciSI	GCTCTTC	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 102, 111
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	399
PkrI	GCNGC	2 cut(s)	168, 193
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
Psp6I	CCWGG	3 cut(s)	249, 291, 300
PspGI	CCWGG	3 cut(s)	249, 291, 300
PspN4I	GGNNCC	3 cut(s)	139, 290, 298
PspPI	GGNCC	1 cut(s)	127
PspXI	VCTCGAGB	1 cut(s)	104
PsuI	RGATCY	2 cut(s)	258, 296
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
RseI	CAYNNNNRTG	2 cut(s)	482, 484
SalI	GTCGAC	1 cut(s)	98
SapI	GCTCTTC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	523
SatI	GCNGC	2 cut(s)	167, 192
Sau3AI	GATC	4 cut(s)	234, 253, 258, 296
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	4 cut(s)	26, 251, 293, 302
SduI	GDGCHC	4 cut(s)	111, 291, 462, 479
Sfr274I	CTCGAG	1 cut(s)	104
SinI	GGWCC	1 cut(s)	127
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	2 cut(s)	482, 484
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	501, 508
SsiI	CCGC	2 cut(s)	130, 324
StyD4I	CCNGG	4 cut(s)	24, 249, 291, 300
TaaI	ACNGT	3 cut(s)	19, 115, 406
TaiI	ACGT	2 cut(s)	81, 434
TaqI	TCGA	4 cut(s)	99, 105, 120, 335
TasI	AATT	2 cut(s)	501, 508
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	1 cut(s)	523
Tru9I	TTAA	1 cut(s)	523
TscAI	CASTG	4 cut(s)	289, 325, 409, 486
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	2 cut(s)	166, 191
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	379
TspRI	CASTG	4 cut(s)	289, 325, 409, 486
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	1 cut(s)	508
XhoI	CTCGAG	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.