Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003728

Physical Location & Seq

Genomic Coordinates Reverse (-)

2731070 .. 2734518

Gene Structure 3449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031179

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2211 bp

ATGTTTCAGCCAAGCATGTTCGACAGCCACCATATGAGTATGCTGGACATGTCGACCCACAAAAGCTCTGAGAGTGATATGGGAAGGAGCCGGGATGATGATTTTGAGACAAAATCCGGCACTGAAACAACAGATGCTCCCTCTGGAGATGAACTAGATCCCTCCCAACCTCGCCCCAAAAGGAAACGCTACCACCGCCACACACAGCGCCAAATCCAGGAAATGGAAGCATTCTTCAAGGAGTGTCCGCACCCAGATGACAAGCAGAGAAAGGAGCTGAGCCGTGAGCTAGGGTTAGAGCCTTTGCAAGTCAAATTCTGGTTTCAAAATAAGCGAACCCAAATGAAGGCCCAACATGAACGGCATGAGAATTCGATTTTGAAGAACGAAAATGACAAGCTTCGTGCTGAGAACAATCGATACAAGGAAGCCCTCAGCAATGCCACATGCCCCAACTGTGGAGGTCCGGCTGCTCTTGGTGAGATGTCCTTTGATGAGCAACATTTAAGGATCGAAAATGCTCGTTTACGTGAAGAGATTGATAGGATATCTTCTATTGCCGCCAAATACGTTGGCAAACCTATGTCAAGCTCATTCTCTCACCTTTCATCTTCTCAAGGGCCTTCCCGCTCCCTTGATCTTGCGGTTGGCAGTTTTGGGGCTTCACAGTCTGGTTATGTAGGAGAAATGTATGGATCTGGTGACCTTCTCAGATCAGTTTCAGTGCCTACTGATGCTGACAAGCCCTTGATTGTTGAGCTTGCCGTGGCAGCCATGGAAGAACTTATTAGAATGGCTCAGGCTGGAGACCCTTTATGGGTTCCTGCTCATGACAACAGTTCATCAACTCATCATGATATTCTAAATGAAGACGAATACTTGAGGACGTTTCCTAGGGGTATTGGCCCTAAACCATTGGGCTTAAAATCTGAAGCTTCAAGAGAATCAGCATTGGTCATCATGAATCACGTTAACCTTGTTGAGATTCTTATGGATGTGAACCAATGGTCTACTGTGTTCTGTGGTATTGTTTCAAGAGCAATGACCCTTGACATCCTATCAACCGGAGTAGCTGGAAACTACAACGGAGCCTTGCAAGTGATGTCAGCTGAGTTCCAAGTTCCCTCACCGCTTGTTCCAACTCGTGAGAACTACTTTGTAAGGTACTGTAAGCAGCATACTGATGGAACTTGGGCAGTGGTTGATGTTTCCTTGGATAATTTACGCCCAAGTTCAATTTCAAGAAGTCGTAGAAGGCCATCCGGTTGCTTAATCCAAGAATTGCCTAATGGTTACTCCAAGGTTGTATGGGTAGAACACGTAGAAGTGGATGATAGAGCTGTTCACAACATTTACAGACCACTAGTAAACTCTGGTCTTGCATTTGGAGCCAAGCGTTGGGTTGCTACACTTGATAGACAATGTGAACGTCTTGCAAGTTCATTGGCCAACAATATTCCGGCTGGAGATCTCTGTGTCATAACTAGTGCAGAAGGGAGGAAAAGTATGTTGAAGCTCGCGCAGAGGATGGTGTTGAGCTTTTGCACTGGCGTTGGTGCTTCTACGGCACACGCGTGGACGACATTGTCAGCAACAGGCTCTGATGATGTGAGGGTCATGACCAGGAAAAGCATGGATGATCCTGGCAGGCCTCCTGGCATTGTTCTAAGTGCTGCAACTTCCTTCTGGCTTCCAGTTCCTCCCAAGAGAGTCTTTGATTTCCTTCGAGATGAGAATTCTCGGAGTGAGTGGGATATCCTTTCAAATGGTGGCCTAGTGCAAGAGATGGCACACATAGCTAACGGTCGTGATCCTGGTAACTGTGTCTCCTTATTGCGTAGTGCAAATTCTAGTCAAAGCAACATGCTGATACTCCAGGAGAGCTGCACAGATTCAACAGGGTCGTATGTGATATATGCTCCAGTCGATATTGCGGCCATGAATGTCGTGTTGAGTGGGGGTGACCCTGATTATGTTGCACTTCTGCCATCGGGTTTTGCTATCCTACCTGATGGGCCTCCTGCTGGAGGAGCCGGAGGAATTCTTGATGTTGGTTCTGGTGGATCTCTACTGACAGTAGCATTTCAGATCCTAGTTGATTCAGTTCCTACTGCAAAACTCTCGCTTGGATCTGTGGCCACTGTTAACAATCTGATTAAGTGCACTGTTGAGCGGATTAGAGCTGCGGTCACATGTGATCAGAACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009790 GO:0009791 GO:0009793 GO:0009845 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0061458 GO:0065007 GO:0080090 GO:0090351 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

737

Amino Acids

80.54

Weight (kDa)

5.86

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	61 - 116	4.8e-18	Homeodomain
START	PF01852	254 - 477	6.3e-53	START domain
PDF2_C	PF25797	496 - 732	1.8e-103	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04890 AT4G04890 AT4G21750 AT4G21750 AT4G21750 AT4G21750
fragaria_vesca	FvH4_3g02520 FvH4_3g02520 FvH4_3g02520 FvH4_3g02520
malus_domestica	MD05G1342200.v1.1 MD10G1315800.v1.1
prunus_persica	Prupe.4G024800_v2.0.a1 Prupe.4G024800_v2.0.a1 Prupe.4G024800_v2.0.a1
pyrus_communis	pycom05g31150
rosa_chinensis	RchiOBHm_Chr5g0003831
rosa_laevigata	RLG00000031179
rosa_multiflora	Rmu_sc0010187.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072160
rosa_rugosa	Rorug04G0407000 Rorug04G0407100 Rorug04G0407100 Rorug04G0407200 Rorug04G0407300 Rorug04G0407400 Rorug04G0407400 Rorug04G0407500 Rorug04G0407500
rosa_samantha	Rh5AG034500 Rh5BG032800 Rh5CG036900 Rh5DG033200
rosa_wichuraiana	Rw5G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1585
AccB7I	CCANNNNNTGG	2 cut(s)	223, 1398
AccBSI	CCGCTC	2 cut(s)	630, 2173
AccI	GTMKAC	2 cut(s)	53, 1010
AccII	CGCG	2 cut(s)	1520, 1574
AciI	CCGC	9 cut(s)	196, 248, 561, 628, 644, 1130, 1934, 2173, 2186
AclWI	GGATC	8 cut(s)	152, 518, 703, 1634, 1805, 2071, 2083, 2137
AcoI	YGGCCR	3 cut(s)	1446, 1935, 2136
AcsI	RAATTY	5 cut(s)	314, 370, 1735, 1846, 2040
AcuI	CTGAAG	1 cut(s)	951
AfaI	GTAC	1 cut(s)	1166
AfiI	CCNNNNNNNGG	8 cut(s)	217, 223, 346, 458, 817, 1398, 2024, 2027
AflIII	ACRYGT	4 cut(s)	48, 1318, 1572, 2192
AhlI	ACTAGT	2 cut(s)	1363, 1484
AjnI	CCWGG	6 cut(s)	216, 1622, 1642, 1654, 1813, 1875
AjuI	GAANNNNNNNTTGG	2 cut(s)	1222, 1254
AleI	CACNNNNGTG	1 cut(s)	1573
Alw21I	GWGCWC	1 cut(s)	2165
Alw26I	GTCTC	3 cut(s)	101, 801, 1831
Alw44I	GTGCAC	1 cut(s)	2161
AlwI	GGATC	8 cut(s)	152, 518, 703, 1634, 1805, 2071, 2083, 2137
AlwNI	CAGNNNCTG	1 cut(s)	1601
ApaLI	GTGCAC	1 cut(s)	2161
ApeKI	GCWGC	6 cut(s)	470, 770, 1174, 1673, 1884, 2183
ApoI	RAATTY	5 cut(s)	314, 370, 1735, 1846, 2040
AspA2I	CCTAGG	1 cut(s)	893
AspLEI	GCGC	2 cut(s)	210, 1522
AspS9I	GGNCC	5 cut(s)	349, 464, 620, 905, 2015
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	5 cut(s)	491, 593, 713, 1119, 1973
AvaII	GGWCC	1 cut(s)	464
AvrII	CCTAGG	1 cut(s)	893
BaeGI	GKGCMC	1 cut(s)	2165
BalI	TGGCCA	2 cut(s)	1448, 2138
BauI	CACGAG	1 cut(s)	1143
BbsI	GAAGAC	1 cut(s)	876
Bbv12I	GWGCWC	1 cut(s)	2165
BbvCI	CCTCAGC	1 cut(s)	434
BbvI	GCAGC	6 cut(s)	457, 782, 1186, 1660, 1871, 2170
BccI	CCATC	6 cut(s)	1178, 1267, 1522, 1780, 1996, 2006
BceAI	ACGGC	4 cut(s)	267, 377, 749, 1581
BcgI	CGANNNNNNTGC	2 cut(s)	2103, 2137
BciT130I	CCWGG	6 cut(s)	218, 1624, 1644, 1656, 1815, 1877
BclI	TGATCA	1 cut(s)	2197
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	3 cut(s)	101, 801, 1831
BcuI	ACTAGT	2 cut(s)	1363, 1484
BfaI	CTAG	8 cut(s)	155, 290, 894, 1364, 1485, 1775, 1851, 2093
BfoI	RGCGCY	1 cut(s)	211
BglII	AGATCT	1 cut(s)	1468
BisI	GCNGC	8 cut(s)	471, 561, 771, 1175, 1674, 1885, 1935, 2184
BlnI	CCTAGG	1 cut(s)	893
BlpI	GCTNAGC	1 cut(s)	278
BlsI	GCNGC	8 cut(s)	472, 562, 772, 1176, 1675, 1886, 1936, 2185
Bme1390I	CCNGG	7 cut(s)	92, 218, 1624, 1644, 1656, 1815, 1877
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	5 cut(s)	349, 464, 620, 905, 2015
BmiI	GGNNCC	5 cut(s)	89, 822, 1090, 1390, 2032
BmrFI	CCNGG	7 cut(s)	92, 218, 1624, 1644, 1656, 1815, 1877
BmsI	GCATC	2 cut(s)	124, 724
BpiI	GAAGAC	1 cut(s)	876
BpmI	CTGGAG	6 cut(s)	165, 825, 1485, 1859, 1905, 2046
Bpu10I	CCTNAGC	2 cut(s)	434, 798
Bpu1102I	GCTNAGC	1 cut(s)	278
BpuEI	CTTGAG	2 cut(s)	600, 901
BpuMI	CCSGG	1 cut(s)	92
Bsa29I	ATCGAT	1 cut(s)	418
BsaAI	YACGTR	2 cut(s)	530, 1321
BsaI	GGTCTC	1 cut(s)	801
BsaJI	CCNNGG	5 cut(s)	765, 774, 893, 1212, 1299
BsaWI	WCCGGW	2 cut(s)	1064, 1262
BsaXI	ACNNNNNCTCC	6 cut(s)	121, 151, 1489, 1519, 1811, 1841
Bsc4I	CCNNNNNNNGG	8 cut(s)	217, 223, 346, 458, 817, 1398, 2024, 2027
Bse1I	ACTGG	3 cut(s)	1552, 1694, 1922
Bse3DI	GCAATG	2 cut(s)	445, 1047
BseBI	CCWGG	6 cut(s)	218, 1624, 1644, 1656, 1815, 1877
BseCI	ATCGAT	1 cut(s)	418
BseDI	CCNNGG	5 cut(s)	765, 774, 893, 1212, 1299
BseGI	GGATG	7 cut(s)	100, 1000, 1053, 1259, 1336, 1533, 1642
BseLI	CCNNNNNNNGG	8 cut(s)	217, 223, 346, 458, 817, 1398, 2024, 2027
BseMI	GCAATG	2 cut(s)	445, 1047
BseMII	CTCAG	7 cut(s)	60, 269, 399, 448, 724, 812, 1101
BseNI	ACTGG	3 cut(s)	1552, 1694, 1922
BseRI	GAGGAG	1 cut(s)	2043
BseSI	GKGCMC	1 cut(s)	2165
BseXI	GCAGC	6 cut(s)	457, 782, 1186, 1660, 1871, 2170
BsgI	GTGCAG	2 cut(s)	1509, 1870
Bsh1236I	CGCG	2 cut(s)	1520, 1574
Bsh1285I	CGRYCG	1 cut(s)	1807
BshVI	ATCGAT	1 cut(s)	418
BsiEI	CGRYCG	1 cut(s)	1807
BsiHKAI	GWGCWC	1 cut(s)	2165
BsiSI	CCGG	7 cut(s)	91, 117, 467, 1065, 1263, 1460, 2034
BslI	CCNNNNNNNGG	8 cut(s)	217, 223, 346, 458, 817, 1398, 2024, 2027
BsmAI	GTCTC	3 cut(s)	101, 801, 1831
BsmI	GAATGC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	801
Bsp1286I	GDGCHC	1 cut(s)	2165
Bsp1720I	GCTNAGC	1 cut(s)	278
Bsp19I	CCATGG	1 cut(s)	774
BspACI	CCGC	9 cut(s)	196, 248, 561, 628, 644, 1130, 1934, 2173, 2186
BspCNI	CTCAG	7 cut(s)	61, 270, 400, 447, 723, 811, 1102
BspDI	ATCGAT	1 cut(s)	418
BspFNI	CGCG	2 cut(s)	1520, 1574
BspHI	TCATGA	4 cut(s)	829, 853, 960, 1617
BspLI	GGNNCC	5 cut(s)	89, 822, 1090, 1390, 2032
BspPI	GGATC	8 cut(s)	152, 518, 703, 1634, 1805, 2071, 2083, 2137
BspTNI	GGTCTC	1 cut(s)	801
BsrBI	CCGCTC	2 cut(s)	630, 2173
BsrDI	GCAATG	2 cut(s)	445, 1047
BsrI	ACTGG	3 cut(s)	1552, 1694, 1922
BssECI	CCNNGG	5 cut(s)	765, 774, 893, 1212, 1299
BssSI	CACGAG	1 cut(s)	1143
BssT1I	CCWWGG	4 cut(s)	774, 893, 1212, 1299
Bst2BI	CACGAG	1 cut(s)	1143
Bst2UI	CCWGG	6 cut(s)	218, 1624, 1644, 1656, 1815, 1877
Bst6I	CTCTTC	1 cut(s)	528
BstBAI	YACGTR	2 cut(s)	530, 1321
BstC8I	GCNNGC	3 cut(s)	762, 1518, 1649
BstDEI	CTNAG	8 cut(s)	69, 278, 408, 434, 710, 798, 1110, 1667
BstDSI	CCRYGG	2 cut(s)	765, 774
BstEII	GGTNACC	2 cut(s)	701, 1961
BstENI	CCTNNNNNAGG	1 cut(s)	2025
BstF5I	GGATG	7 cut(s)	100, 1000, 1053, 1259, 1336, 1533, 1642
BstFNI	CGCG	2 cut(s)	1520, 1574
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	2 cut(s)	210, 1522
BstMAI	GTCTC	3 cut(s)	101, 801, 1831
BstMCI	CGRYCG	1 cut(s)	1807
BstMWI	GCNNNNNNNGC	6 cut(s)	195, 770, 1388, 1565, 1796, 2030
BstNI	CCWGG	6 cut(s)	218, 1624, 1644, 1656, 1815, 1877
BstNSI	RCATGY	5 cut(s)	19, 52, 450, 1867, 2196
BstPI	GGTNACC	2 cut(s)	701, 1961
BstSCI	CCNGG	7 cut(s)	90, 216, 1622, 1642, 1654, 1813, 1875
BstSLI	GKGCMC	1 cut(s)	2165
BstUI	CGCG	2 cut(s)	1520, 1574
BstV1I	GCAGC	6 cut(s)	457, 782, 1186, 1660, 1871, 2170
BstV2I	GAAGAC	1 cut(s)	876
BstX2I	RGATCY	6 cut(s)	157, 695, 1468, 2063, 2088, 2129
BstYI	RGATCY	6 cut(s)	157, 695, 1468, 2063, 2088, 2129
Bsu15I	ATCGAT	1 cut(s)	418
BsuTUI	ATCGAT	1 cut(s)	418
BtgI	CCRYGG	2 cut(s)	765, 774
BtsCI	GGATG	7 cut(s)	100, 1000, 1053, 1259, 1336, 1533, 1642
BtsI	GCAGTG	1 cut(s)	1203
BtsIMutI	CAGTG	6 cut(s)	120, 729, 1203, 1545, 2139, 2163
Cac8I	GCNNGC	3 cut(s)	762, 1518, 1649
CaiI	CAGNNNCTG	1 cut(s)	1601
CciI	TCATGA	4 cut(s)	829, 853, 960, 1617
CfoI	GCGC	2 cut(s)	210, 1522
Cfr13I	GGNCC	5 cut(s)	349, 464, 620, 905, 2015
ClaI	ATCGAT	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	1165
CviQI	GTAC	1 cut(s)	1165
DdeI	CTNAG	8 cut(s)	69, 278, 408, 434, 710, 798, 1110, 1667
DrdI	GACNNNNNNGTC	1 cut(s)	1585
DseDI	GACNNNNNNGTC	1 cut(s)	1585
EaeI	YGGCCR	3 cut(s)	1446, 1935, 2136
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco130I	CCWWGG	4 cut(s)	774, 893, 1212, 1299
Eco147I	AGGCCT	1 cut(s)	1651
Eco31I	GGTCTC	1 cut(s)	801
Eco32I	GATATC	2 cut(s)	549, 1756
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	951
Eco91I	GGTNACC	2 cut(s)	701, 1961
EcoNI	CCTNNNNNAGG	1 cut(s)	2025
EcoO109I	RGGNCCY	1 cut(s)	620
EcoO65I	GGTNACC	2 cut(s)	701, 1961
EcoRI	GAATTC	3 cut(s)	370, 1735, 2040
EcoRII	CCWGG	6 cut(s)	216, 1622, 1642, 1654, 1813, 1875
EcoRV	GATATC	2 cut(s)	549, 1756
EcoT14I	CCWWGG	4 cut(s)	774, 893, 1212, 1299
ErhI	CCWWGG	4 cut(s)	774, 893, 1212, 1299
FalI	AAGNNNNNCTT	2 cut(s)	1697, 1729
FauI	CCCGC	1 cut(s)	635
FauNDI	CATATG	1 cut(s)	33
FbaI	TGATCA	1 cut(s)	2197
FblI	GTMKAC	2 cut(s)	53, 1010
Fnu4HI	GCNGC	8 cut(s)	471, 561, 771, 1175, 1674, 1885, 1935, 2184
FokI	GGATG	7 cut(s)	107, 1007, 1040, 1246, 1343, 1540, 1649
Fsp4HI	GCNGC	8 cut(s)	471, 561, 771, 1175, 1674, 1885, 1935, 2184
FspBI	CTAG	8 cut(s)	155, 290, 894, 1364, 1485, 1775, 1851, 2093
GlaI	GCGC	2 cut(s)	209, 1521
GluI	GCNGC	8 cut(s)	471, 561, 771, 1175, 1674, 1885, 1935, 2184
GsuI	CTGGAG	6 cut(s)	165, 825, 1485, 1859, 1905, 2046
HaeII	RGCGCY	1 cut(s)	211
HapII	CCGG	7 cut(s)	91, 117, 467, 1065, 1263, 1460, 2034
HhaI	GCGC	2 cut(s)	210, 1522
Hin6I	GCGC	2 cut(s)	208, 1520
HinP1I	GCGC	2 cut(s)	208, 1520
HincII	GTYRAC	3 cut(s)	54, 973, 2146
HindII	GTYRAC	3 cut(s)	54, 973, 2146
HindIII	AAGCTT	2 cut(s)	398, 933
HinfI	GANTC	6 cut(s)	944, 964, 985, 1710, 1892, 2099
HpaI	GTTAAC	2 cut(s)	973, 2146
HpaII	CCGG	7 cut(s)	91, 117, 467, 1065, 1263, 1460, 2034
HphI	GGTGA	5 cut(s)	491, 593, 713, 1119, 1973
Hpy188I	TCNGA	8 cut(s)	70, 713, 931, 1603, 1743, 2088, 2154, 2202
HpyAV	CCTTC	8 cut(s)	78, 340, 633, 716, 1248, 1487, 1693, 1733
HpyCH4IV	ACGT	6 cut(s)	529, 570, 887, 969, 1320, 1429
HpyF10VI	GCNNNNNNNGC	6 cut(s)	195, 770, 1388, 1565, 1796, 2030
HpyF3I	CTNAG	8 cut(s)	69, 278, 408, 434, 710, 798, 1110, 1667
HpySE526I	ACGT	6 cut(s)	529, 570, 887, 969, 1320, 1429
HspAI	GCGC	2 cut(s)	208, 1520
Ksp22I	TGATCA	1 cut(s)	2197
KspAI	GTTAAC	2 cut(s)	973, 2146
LmnI	GCTCC	8 cut(s)	87, 142, 274, 635, 1088, 1388, 1924, 2030
Lsp1109I	GCAGC	6 cut(s)	457, 782, 1186, 1660, 1871, 2170
LweI	GCATC	2 cut(s)	124, 724
MaeI	CTAG	8 cut(s)	155, 290, 894, 1364, 1485, 1775, 1851, 2093
MaeII	ACGT	6 cut(s)	529, 570, 887, 969, 1320, 1429
MaeIII	GTNAC	5 cut(s)	701, 1292, 1817, 1961, 2188
MbiI	CCGCTC	2 cut(s)	630, 2173
MboII	GAAGA	7 cut(s)	226, 394, 543, 545, 603, 791, 881
MflI	RGATCY	6 cut(s)	157, 695, 1468, 2063, 2088, 2129
MhlI	GDGCHC	1 cut(s)	2165
MlsI	TGGCCA	2 cut(s)	1448, 2138
MluCI	AATT	8 cut(s)	314, 370, 1219, 1236, 1280, 1735, 1846, 2040
MluI	ACGCGT	1 cut(s)	1572
MluNI	TGGCCA	2 cut(s)	1448, 2138
MlyI	GAGTC	1 cut(s)	1719
MmeI	TCCRAC	1 cut(s)	1163
Mox20I	TGGCCA	2 cut(s)	1448, 2138
MscI	TGGCCA	2 cut(s)	1448, 2138
MseI	TTAA	6 cut(s)	506, 923, 972, 1271, 2145, 2157
MslI	CAYNNNNRTG	3 cut(s)	255, 1182, 1573
Msp20I	TGGCCA	2 cut(s)	1448, 2138
MspA1I	CMGCKG	1 cut(s)	1109
MspI	CCGG	7 cut(s)	91, 117, 467, 1065, 1263, 1460, 2034
MspR9I	CCNGG	7 cut(s)	92, 218, 1624, 1644, 1656, 1815, 1877
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	6 cut(s)	218, 1624, 1644, 1656, 1815, 1877
MvnI	CGCG	2 cut(s)	1520, 1574
MwoI	GCNNNNNNNGC	6 cut(s)	195, 770, 1388, 1565, 1796, 2030
NciI	CCSGG	1 cut(s)	92
NcoI	CCATGG	1 cut(s)	774
NdeI	CATATG	1 cut(s)	33
NlaIV	GGNNCC	5 cut(s)	89, 822, 1090, 1390, 2032
NmuCI	GTSAC	3 cut(s)	701, 1961, 2188
NspI	RCATGY	5 cut(s)	19, 52, 450, 1867, 2196
OliI	CACNNNNGTG	1 cut(s)	1573
PagI	TCATGA	4 cut(s)	829, 853, 960, 1617
PceI	AGGCCT	1 cut(s)	1651
PciI	ACATGT	2 cut(s)	48, 2192
PcsI	WCGNNNNNNNCGW	1 cut(s)	1571
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	5 cut(s)	944, 964, 985, 1892, 2099
PflFI	GACNNNGTC	1 cut(s)	1585
PflMI	CCANNNNNTGG	2 cut(s)	223, 1398
PfoI	TCCNGGA	2 cut(s)	216, 1875
PkrI	GCNGC	8 cut(s)	472, 562, 772, 1176, 1675, 1886, 1936, 2185
PleI	GAGTC	1 cut(s)	1718
PpsI	GAGTC	1 cut(s)	1718
Ppu21I	YACGTR	2 cut(s)	530, 1321
PscI	ACATGT	2 cut(s)	48, 2192
Psp6I	CCWGG	6 cut(s)	216, 1622, 1642, 1654, 1813, 1875
PspEI	GGTNACC	2 cut(s)	701, 1961
PspGI	CCWGG	6 cut(s)	216, 1622, 1642, 1654, 1813, 1875
PspN4I	GGNNCC	5 cut(s)	89, 822, 1090, 1390, 2032
PspPI	GGNCC	5 cut(s)	349, 464, 620, 905, 2015
PsrI	GAACNNNNNNTAC	2 cut(s)	404, 436
PstNI	CAGNNNCTG	1 cut(s)	1601
PsuI	RGATCY	6 cut(s)	157, 695, 1468, 2063, 2088, 2129
PsyI	GACNNNGTC	1 cut(s)	1585
PvuII	CAGCTG	1 cut(s)	1109
RsaI	GTAC	1 cut(s)	1166
RsaNI	GTAC	1 cut(s)	1165
RseI	CAYNNNNRTG	3 cut(s)	255, 1182, 1573
SalI	GTCGAC	1 cut(s)	52
SaqAI	TTAA	6 cut(s)	506, 923, 972, 1271, 2145, 2157
SatI	GCNGC	8 cut(s)	471, 561, 771, 1175, 1674, 1885, 1935, 2184
Sau96I	GGNCC	5 cut(s)	349, 464, 620, 905, 2015
SchI	GAGTC	1 cut(s)	1719
ScrFI	CCNGG	7 cut(s)	92, 218, 1624, 1644, 1656, 1815, 1877
SduI	GDGCHC	1 cut(s)	2165
SfaNI	GCATC	2 cut(s)	124, 724
SinI	GGWCC	1 cut(s)	464
SmiMI	CAYNNNNRTG	3 cut(s)	255, 1182, 1573
SmlI	CTYRAG	2 cut(s)	615, 880
SmoI	CTYRAG	2 cut(s)	615, 880
SpeI	ACTAGT	2 cut(s)	1363, 1484
Sse9I	AATT	8 cut(s)	314, 370, 1219, 1236, 1280, 1735, 1846, 2040
SseBI	AGGCCT	1 cut(s)	1651
SsiI	CCGC	9 cut(s)	196, 248, 561, 628, 644, 1130, 1934, 2173, 2186
SspI	AATATT	1 cut(s)	1456
SspMI	CTAG	8 cut(s)	155, 290, 894, 1364, 1485, 1775, 1851, 2093
StuI	AGGCCT	1 cut(s)	1651
StyD4I	CCNGG	7 cut(s)	90, 216, 1622, 1642, 1654, 1813, 1875
StyI	CCWWGG	4 cut(s)	774, 893, 1212, 1299
TaiI	ACGT	6 cut(s)	532, 573, 890, 972, 1323, 1432
TaqI	TCGA	7 cut(s)	21, 53, 374, 418, 513, 1726, 1926
TasI	AATT	8 cut(s)	314, 370, 1219, 1236, 1280, 1735, 1846, 2040
TauI	GCSGC	2 cut(s)	563, 1937
TfiI	GAWTC	5 cut(s)	944, 964, 985, 1892, 2099
Tru1I	TTAA	6 cut(s)	506, 923, 972, 1271, 2145, 2157
Tru9I	TTAA	6 cut(s)	506, 923, 972, 1271, 2145, 2157
TscAI	CASTG	6 cut(s)	127, 729, 1203, 1552, 2146, 2170
TseFI	GTSAC	3 cut(s)	701, 1961, 2188
TseI	GCWGC	6 cut(s)	470, 770, 1174, 1673, 1884, 2183
Tsp45I	GTSAC	3 cut(s)	701, 1961, 2188
TspDTI	ATGAA	9 cut(s)	165, 359, 372, 597, 831, 882, 977, 1431, 1955
TspGWI	ACGGA	1 cut(s)	1101
TspRI	CASTG	6 cut(s)	127, 729, 1203, 1552, 2146, 2170
Tth111I	GACNNNGTC	1 cut(s)	1585
Van91I	CCANNNNNTGG	2 cut(s)	223, 1398
VneI	GTGCAC	1 cut(s)	2161
VpaK11BI	GGWCC	1 cut(s)	464
XagI	CCTNNNNNAGG	1 cut(s)	2025
XapI	RAATTY	5 cut(s)	314, 370, 1735, 1846, 2040
XceI	RCATGY	5 cut(s)	19, 52, 450, 1867, 2196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1630
XmaJI	CCTAGG	1 cut(s)	893
XmiI	GTMKAC	2 cut(s)	53, 1010
XspI	CTAG	8 cut(s)	155, 290, 894, 1364, 1485, 1775, 1851, 2093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.