Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003728

Physical Location & Seq

Genomic Coordinates Forward (+)

46260424 .. 46265963

Gene Structure 5540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1342200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2211 bp

ATGTTTCAGCCAAGCATGTTCGACAGTCACCACATCCTAGATCACATGACGACGAGCAGTACCCACAAAACCTCGGATAGTACTGGTCGACTGCTGGAGGATGACTTCGAGACCAAATCCGGAACCGAAACGACTATGGACATTCCTTCTGGTGACGAGCAAGATCCCAACACCACCGGCCCGCGCCCCAAAAGAAAACGTTACCATCGCCACACCCAGCTCCAAATCCAGGAGATGGAAGCATTCTTCAAGGAGTGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTGAGTCGTGAACTAGGGTTAGAGCCTTTGCAAGTCAAATTCTGGTTCCAAAACAAGCGCACCCAAATGAAGGCACAACATGAACGCCATGAGAATTCAATTTTGAAATCTGAGAACGACAAGCTTCGTGATGAGAACAATAGGTACAAGGAAGCCCTTGGCAATGCCACATGCCCCAACTGTGGAGGACCAGCTTCAATTGGTGAGATGTCATTTGATGAGCAACATTTGAGGATTGAAAATGCTCGTTTACGTGAAGAGATTGATAGGATATCTTCGATTGCTGCTAAATATGTTGGGAAACCCTTGACAAGCTCATTTTCCTCTCACGTGCCTTCGCGCTCCCTTGATCTTGGGGTTGGGAATTTTGGTACTCAGCCAGGCTTCGTAGGAGAAATGTATGGATCATCTAGTGATTTTCTCAGGACAGTTTCAGTGCCCACTGAGGCAGATAAGCCGATGATCGTTGAGCTTGCTGTTGCAGCCATGGAAGAACTAATTAGAATGGCTCAGGATGGAGACCCCTTATGGGTTCCTGGTGACCACAACTCAATTCAAAAAGAAATTTTAAATGAAGACGAGTACTTGAGGACATTTCCGAGGGGGATTGGCCCTAAAATATTGGGCTTAAAGTCTGAGGCTTCAAGAGAATCGGAATTGGTCATCATGAATCATGTTAACCTTGTTGAGATTCTCATGGATGTGAATCAATGGTCTACCATCTTTTGTGGTGTTGTCTCAAGAGCAATGACCCTTGATATCCTATCAACTGGAGTAGCTGGAAACTACAATGGAGCCTTGCAAGTGATGACTGCTGAGTTTCAAGTACCCTCACCACTCGTTCCAACCCGTGAGAATTACTTTGTAAGGTACTGTAAGCAGCAAGTTGATGGAACTTGGGCAGTGGTTGATGTTTCCTTGGACAACCTACGCCCAAGTCCAATTTCAAGAAGTCGAAGAAGGCCATCCGGTTGCTTAATCCAAGAATTGCCAAATGGCTACTCTAAGGTTACATGGGTGGAACATGTTGAAGTGGATGATAGAGCTGTTCACAACATATACAGACCCCTAGTCAATTCTGGTCTTGCCTTTGGAGCTAAGCGTTGGGTGGCTACACTTGATAGACAGTGCGAACGTCTTGCGAGTTCCATGGCCAGTAACATCCCTGCTGGAGATCTTTGTGTGATAACTAGTACTGAAGGGAGGAAAAGTATGTTGAAGCTGGCACAAAGAATGGTGATGAGCTTCTGTACCGGTGTTGGTGCTTCTACTGCACATGCATGGACTACATTATCAGCAACGGGTTCAGATGATGTGAGGGTCATGACCCGAAAAAGTATGGACGATCCTGGCAGGCCTCCTGGGATAGTTTTAAGTGCTGCAACTTCCTTCTGGATTCCTGTCCCTCCCAAGAGAGTTTTTGATTTCCTGCGTGATGAAAACTCTCGTAGTGAGTGGGATATACTTTCAAATGGTGGGCTAGTTCAAGAGATGGCGCACATAGCTAATGGTCGCGATCCAGGCAACTGTGTCTCCCTACTTCGCGTAAATAGTGCAAACTCAAGCCAAAGCAATATGCTGATACTTCAGGAGAGCTGCACTGATTCAACCGGGTCATACGTGATTTATGCACCAGTTGATATCGTAGCCATGAATGTTGTGTTAAGTGGTGGAGACCCAGATTATGTTGCACTTCTGCCCTCAGGTTTTGCCATCCTTCCAGATGGAGCTGCTGGGTCCGCAGGAGGAGGAATTCTTGATGTTGGCTCTGGTGGGTCTCTACTCACCGTAGCATTTCAGATCTTGGTTGATTCAGTTCCCACTGCTAAACTCTCTCTGGGATCTGTGGCCACTGTTAACAATCTAATTAAGTGCACGGTTGAGCGTATTAGAGCCGCAGTTACATGTGACCAAAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009790 GO:0009791 GO:0009793 GO:0009845 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0061458 GO:0065007 GO:0080090 GO:0090351 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

737

Amino Acids

80.85

Weight (kDa)

5.61

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	65 - 120	4.6e-18	Homeodomain
START	PF01852	254 - 475	6e-52	START domain
PDF2_C	PF25797	494 - 732	5.7e-102	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04890 AT4G04890 AT4G21750 AT4G21750 AT4G21750 AT4G21750
fragaria_vesca	FvH4_3g02520 FvH4_3g02520 FvH4_3g02520 FvH4_3g02520
malus_domestica	MD05G1342200.v1.1 MD10G1315800.v1.1
prunus_persica	Prupe.4G024800_v2.0.a1 Prupe.4G024800_v2.0.a1 Prupe.4G024800_v2.0.a1
pyrus_communis	pycom05g31150
rosa_chinensis	RchiOBHm_Chr5g0003831
rosa_laevigata	RLG00000031179
rosa_multiflora	Rmu_sc0010187.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072160
rosa_rugosa	Rorug04G0407000 Rorug04G0407100 Rorug04G0407100 Rorug04G0407200 Rorug04G0407300 Rorug04G0407400 Rorug04G0407400 Rorug04G0407500 Rorug04G0407500
rosa_samantha	Rh5AG034500 Rh5BG032800 Rh5CG036900 Rh5DG033200
rosa_wichuraiana	Rw5G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	235
AccI	GTMKAC	2 cut(s)	88, 1004
AccII	CGCG	4 cut(s)	184, 628, 1803, 1833
AccIII	TCCGGA	1 cut(s)	119
AciI	CCGC	3 cut(s)	182, 2028, 2184
AclI	AACGTT	1 cut(s)	199
AclWI	GGATC	5 cut(s)	158, 700, 1628, 1799, 2137
AcoI	YGGCCR	2 cut(s)	1440, 2136
AcsI	RAATTY	5 cut(s)	326, 382, 652, 852, 2040
AcuI	CTGAAG	2 cut(s)	1506, 1859
AcvI	CACGTG	1 cut(s)	619
AfaI	GTAC	9 cut(s)	61, 82, 434, 661, 872, 1116, 1160, 1483, 1540
AfiI	CCNNNNNNNGG	5 cut(s)	229, 235, 358, 470, 817
AflIII	ACRYGT	2 cut(s)	1312, 2192
AgeI	ACCGGT	1 cut(s)	1541
AhdI	GACNNNNNGTC	1 cut(s)	1358
AhlI	ACTAGT	1 cut(s)	1478
AjnI	CCWGG	6 cut(s)	228, 667, 823, 1636, 1648, 1807
AjuI	GAANNNNNNNTTGG	2 cut(s)	1216, 1248
Alw21I	GWGCWC	1 cut(s)	2165
Alw26I	GTCTC	6 cut(s)	104, 801, 1030, 1825, 1956, 2070
Alw44I	GTGCAC	1 cut(s)	2161
AlwI	GGATC	5 cut(s)	158, 700, 1628, 1799, 2137
Aor13HI	TCCGGA	1 cut(s)	119
AoxI	GGCC	6 cut(s)	178, 898, 1250, 1440, 1643, 2136
ApaLI	GTGCAC	1 cut(s)	2161
ApeKI	GCWGC	6 cut(s)	572, 770, 1168, 1667, 1884, 2018
ApoI	RAATTY	5 cut(s)	326, 382, 652, 852, 2040
AsiGI	ACCGGT	1 cut(s)	1541
AspLEI	GCGC	4 cut(s)	186, 348, 630, 1786
AspS9I	GGNCC	4 cut(s)	179, 476, 899, 2025
AsuC2I	CCSGG	1 cut(s)	1900
AsuHPI	GGTGA	8 cut(s)	20, 164, 254, 503, 839, 1113, 1537, 2065
AvaII	GGWCC	2 cut(s)	476, 2025
AxyI	CCTNAGG	1 cut(s)	1990
BaeGI	GKGCMC	2 cut(s)	729, 2165
BalI	TGGCCA	2 cut(s)	1442, 2138
BbrPI	CACGTG	1 cut(s)	619
BbsI	GAAGAC	1 cut(s)	870
Bbv12I	GWGCWC	1 cut(s)	2165
BbvI	GCAGC	6 cut(s)	559, 782, 1180, 1654, 1871, 2005
BccI	CCATC	9 cut(s)	213, 229, 797, 1016, 1172, 1261, 1774, 2006, 2009
BcgI	CGANNNNNNTGC	2 cut(s)	1409, 1443
BciT130I	CCWGG	6 cut(s)	230, 669, 825, 1638, 1650, 1809
BcnI	CCSGG	1 cut(s)	1900
BcoDI	GTCTC	6 cut(s)	104, 801, 1030, 1825, 1956, 2070
BcuI	ACTAGT	1 cut(s)	1478
BfaI	CTAG	6 cut(s)	38, 302, 699, 1358, 1479, 1769
BglII	AGATCT	2 cut(s)	1462, 2088
BisI	GCNGC	7 cut(s)	573, 771, 1169, 1668, 1885, 2019, 2184
BlpI	GCTNAGC	1 cut(s)	1386
BlsI	GCNGC	7 cut(s)	574, 772, 1170, 1669, 1886, 2020, 2185
BmcAI	AGTACT	3 cut(s)	82, 872, 1483
Bme1390I	CCNGG	7 cut(s)	230, 669, 825, 1638, 1650, 1809, 1900
Bme18I	GGWCC	2 cut(s)	476, 2025
BmeRI	GACNNNNNGTC	1 cut(s)	1358
BmgT120I	GGNCC	4 cut(s)	179, 476, 899, 2025
BmiI	GGNNCC	5 cut(s)	124, 335, 822, 1084, 2026
BmrFI	CCNGG	7 cut(s)	230, 669, 825, 1638, 1650, 1809, 1900
BpiI	GAAGAC	1 cut(s)	870
BpmI	CTGGAG	3 cut(s)	116, 1080, 1479
Bpu10I	CCTNAGC	1 cut(s)	798
Bpu1102I	GCTNAGC	1 cut(s)	1386
BpuEI	CTTGAG	3 cut(s)	895, 1012, 1834
BpuMI	CCSGG	1 cut(s)	1900
BsaAI	YACGTR	3 cut(s)	542, 619, 1909
BsaBI	GATNNNNATC	1 cut(s)	993
BsaI	GGTCTC	4 cut(s)	104, 801, 1956, 2070
BsaJI	CCNNGG	7 cut(s)	72, 445, 774, 887, 1206, 1437, 1649
BsaWI	WCCGGW	3 cut(s)	119, 1256, 1541
BsaXI	ACNNNNNCTCC	4 cut(s)	1483, 1513, 1805, 1835
Bsc4I	CCNNNNNNNGG	5 cut(s)	229, 235, 358, 470, 817
Bse118I	RCCGGY	2 cut(s)	176, 1541
Bse1I	ACTGG	4 cut(s)	88, 1063, 1443, 1922
Bse21I	CCTNAGG	1 cut(s)	1990
Bse3DI	GCAATG	2 cut(s)	457, 1041
Bse8I	GATNNNNATC	1 cut(s)	993
BseAI	TCCGGA	1 cut(s)	119
BseBI	CCWGG	6 cut(s)	230, 669, 825, 1638, 1650, 1809
BseDI	CCNNGG	7 cut(s)	72, 445, 774, 887, 1206, 1437, 1649
BseGI	GGATG	8 cut(s)	33, 106, 808, 994, 1253, 1330, 1449, 2001
BseJI	GATNNNNATC	1 cut(s)	993
BseLI	CCNNNNNNNGG	5 cut(s)	229, 235, 358, 470, 817
BseMI	GCAATG	2 cut(s)	457, 1041
BseMII	CTCAG	9 cut(s)	281, 390, 677, 723, 724, 812, 915, 1095, 2004
BseNI	ACTGG	4 cut(s)	88, 1063, 1443, 1922
BseRI	GAGGAG	1 cut(s)	2049
BseSI	GKGCMC	2 cut(s)	729, 2165
BseXI	GCAGC	6 cut(s)	559, 782, 1180, 1654, 1871, 2005
BseYI	CCCAGC	2 cut(s)	216, 2021
BsgI	GTGCAG	2 cut(s)	1545, 1870
Bsh1236I	CGCG	4 cut(s)	184, 628, 1803, 1833
BshFI	GGCC	6 cut(s)	180, 900, 1252, 1442, 1645, 2138
BshTI	ACCGGT	1 cut(s)	1541
BsiHKAI	GWGCWC	1 cut(s)	2165
BsiSI	CCGG	5 cut(s)	120, 177, 1257, 1542, 1899
BslFI	GGGAC	1 cut(s)	1676
BslI	CCNNNNNNNGG	5 cut(s)	229, 235, 358, 470, 817
BsmAI	GTCTC	6 cut(s)	104, 801, 1030, 1825, 1956, 2070
BsmFI	GGGAC	1 cut(s)	1676
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	6 cut(s)	180, 900, 1252, 1442, 1645, 2138
Bso31I	GGTCTC	4 cut(s)	104, 801, 1956, 2070
Bsp1286I	GDGCHC	2 cut(s)	729, 2165
Bsp13I	TCCGGA	1 cut(s)	119
Bsp1720I	GCTNAGC	1 cut(s)	1386
Bsp19I	CCATGG	2 cut(s)	774, 1437
Bsp68I	TCGCGA	1 cut(s)	1803
BspACI	CCGC	3 cut(s)	182, 2028, 2184
BspANI	GGCC	6 cut(s)	180, 900, 1252, 1442, 1645, 2138
BspCNI	CTCAG	9 cut(s)	282, 391, 676, 723, 724, 811, 916, 1096, 2003
BspEI	TCCGGA	1 cut(s)	119
BspFNI	CGCG	4 cut(s)	184, 628, 1803, 1833
BspHI	TCATGA	2 cut(s)	954, 1611
BspLI	GGNNCC	5 cut(s)	124, 335, 822, 1084, 2026
BspPI	GGATC	5 cut(s)	158, 700, 1628, 1799, 2137
BspTNI	GGTCTC	4 cut(s)	104, 801, 1956, 2070
BsrDI	GCAATG	2 cut(s)	457, 1041
BsrFI	RCCGGY	2 cut(s)	176, 1541
BsrI	ACTGG	4 cut(s)	88, 1063, 1443, 1922
BssAI	RCCGGY	2 cut(s)	176, 1541
BssECI	CCNNGG	7 cut(s)	72, 445, 774, 887, 1206, 1437, 1649
BssT1I	CCWWGG	4 cut(s)	445, 774, 1206, 1437
Bst2UI	CCWGG	6 cut(s)	230, 669, 825, 1638, 1650, 1809
Bst4CI	ACNGT	9 cut(s)	26, 470, 718, 1163, 1416, 1817, 2077, 2143, 2167
Bst6I	CTCTTC	1 cut(s)	540
BstBAI	YACGTR	3 cut(s)	542, 619, 1909
BstC8I	GCNNGC	4 cut(s)	182, 762, 1512, 1643
BstDSI	CCRYGG	2 cut(s)	774, 1437
BstEII	GGTNACC	1 cut(s)	827
BstF5I	GGATG	8 cut(s)	33, 106, 808, 994, 1253, 1330, 1449, 2001
BstFNI	CGCG	4 cut(s)	184, 628, 1803, 1833
BstHHI	GCGC	4 cut(s)	186, 348, 630, 1786
BstMAI	GTCTC	6 cut(s)	104, 801, 1030, 1825, 1956, 2070
BstMWI	GCNNNNNNNGC	6 cut(s)	770, 1382, 1559, 1790, 1809, 2027
BstNI	CCWGG	6 cut(s)	230, 669, 825, 1638, 1650, 1809
BstNSI	RCATGY	5 cut(s)	19, 462, 1316, 1568, 2196
BstPI	GGTNACC	1 cut(s)	827
BstSCI	CCNGG	7 cut(s)	228, 667, 823, 1636, 1648, 1807, 1898
BstSLI	GKGCMC	2 cut(s)	729, 2165
BstUI	CGCG	4 cut(s)	184, 628, 1803, 1833
BstV1I	GCAGC	6 cut(s)	559, 782, 1180, 1654, 1871, 2005
BstV2I	GAAGAC	1 cut(s)	870
BstX2I	RGATCY	4 cut(s)	163, 1462, 2088, 2129
BstYI	RGATCY	4 cut(s)	163, 1462, 2088, 2129
Bsu36I	CCTNAGG	1 cut(s)	1990
BsuRI	GGCC	6 cut(s)	180, 900, 1252, 1442, 1645, 2138
BtgI	CCRYGG	2 cut(s)	774, 1437
BtgZI	GCGATG	1 cut(s)	191
BtsCI	GGATG	8 cut(s)	33, 106, 808, 994, 1253, 1330, 1449, 2001
BtsI	GCAGTG	2 cut(s)	1197, 2109
BtsIMutI	CAGTG	7 cut(s)	729, 729, 1197, 1421, 1887, 2109, 2139
BtuMI	TCGCGA	1 cut(s)	1803
Cac8I	GCNNGC	4 cut(s)	182, 762, 1512, 1643
CciI	TCATGA	2 cut(s)	954, 1611
CfoI	GCGC	4 cut(s)	186, 348, 630, 1786
Cfr10I	RCCGGY	2 cut(s)	176, 1541
Cfr13I	GGNCC	4 cut(s)	179, 476, 899, 2025
Csp6I	GTAC	9 cut(s)	60, 81, 433, 660, 871, 1115, 1159, 1482, 1539
CspAI	ACCGGT	1 cut(s)	1541
CviQI	GTAC	9 cut(s)	60, 81, 433, 660, 871, 1115, 1159, 1482, 1539
DraI	TTTAAA	1 cut(s)	858
DriI	GACNNNNNGTC	1 cut(s)	1358
EaeI	YGGCCR	2 cut(s)	1440, 2136
Eam1104I	CTCTTC	1 cut(s)	540
Eam1105I	GACNNNNNGTC	1 cut(s)	1358
EarI	CTCTTC	1 cut(s)	540
Eco130I	CCWWGG	4 cut(s)	445, 774, 1206, 1437
Eco147I	AGGCCT	1 cut(s)	1645
Eco31I	GGTCTC	4 cut(s)	104, 801, 1956, 2070
Eco32I	GATATC	3 cut(s)	561, 1048, 1930
Eco47I	GGWCC	2 cut(s)	476, 2025
Eco57I	CTGAAG	2 cut(s)	1506, 1859
Eco72I	CACGTG	1 cut(s)	619
Eco81I	CCTNAGG	1 cut(s)	1990
Eco91I	GGTNACC	1 cut(s)	827
EcoO65I	GGTNACC	1 cut(s)	827
EcoRI	GAATTC	2 cut(s)	382, 2040
EcoRII	CCWGG	6 cut(s)	228, 667, 823, 1636, 1648, 1807
EcoRV	GATATC	3 cut(s)	561, 1048, 1930
EcoT14I	CCWWGG	4 cut(s)	445, 774, 1206, 1437
EcoT22I	ATGCAT	1 cut(s)	1570
ErhI	CCWWGG	4 cut(s)	445, 774, 1206, 1437
FaqI	GGGAC	1 cut(s)	1676
FauI	CCCGC	1 cut(s)	189
FblI	GTMKAC	2 cut(s)	88, 1004
Fnu4HI	GCNGC	7 cut(s)	573, 771, 1169, 1668, 1885, 2019, 2184
FokI	GGATG	8 cut(s)	20, 113, 815, 1001, 1240, 1337, 1436, 1988
Fsp4HI	GCNGC	7 cut(s)	573, 771, 1169, 1668, 1885, 2019, 2184
FspBI	CTAG	6 cut(s)	38, 302, 699, 1358, 1479, 1769
GlaI	GCGC	4 cut(s)	185, 347, 629, 1785
GluI	GCNGC	7 cut(s)	573, 771, 1169, 1668, 1885, 2019, 2184
GsaI	CCCAGC	2 cut(s)	220, 2025
GsuI	CTGGAG	3 cut(s)	116, 1080, 1479
HaeIII	GGCC	6 cut(s)	180, 900, 1252, 1442, 1645, 2138
HapII	CCGG	5 cut(s)	120, 177, 1257, 1542, 1899
HhaI	GCGC	4 cut(s)	186, 348, 630, 1786
Hin6I	GCGC	4 cut(s)	184, 346, 628, 1784
HinP1I	GCGC	4 cut(s)	184, 346, 628, 1784
HincII	GTYRAC	3 cut(s)	89, 967, 2146
HindII	GTYRAC	3 cut(s)	89, 967, 2146
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	8 cut(s)	292, 938, 958, 979, 994, 1684, 1892, 2099
HpaI	GTTAAC	2 cut(s)	967, 2146
HpaII	CCGG	5 cut(s)	120, 177, 1257, 1542, 1899
HphI	GGTGA	8 cut(s)	20, 164, 254, 503, 839, 1113, 1537, 2065
Hpy166II	GTNNAC	8 cut(s)	89, 299, 539, 967, 1005, 1339, 2146, 2163
Hpy188I	TCNGA	7 cut(s)	76, 400, 888, 925, 943, 1597, 2088
Hpy8I	GTNNAC	8 cut(s)	89, 299, 539, 967, 1005, 1339, 2146, 2163
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	8 cut(s)	156, 277, 352, 633, 1242, 1481, 1687, 2015
HpyCH4III	ACNGT	9 cut(s)	26, 470, 718, 1163, 1416, 1817, 2077, 2143, 2167
HpyCH4IV	ACGT	5 cut(s)	199, 541, 618, 1423, 1908
HpyF10VI	GCNNNNNNNGC	6 cut(s)	770, 1382, 1559, 1790, 1809, 2027
HpySE526I	ACGT	5 cut(s)	199, 541, 618, 1423, 1908
HspAI	GCGC	4 cut(s)	184, 346, 628, 1784
Kpn2I	TCCGGA	1 cut(s)	119
KspAI	GTTAAC	2 cut(s)	967, 2146
LmnI	GCTCC	6 cut(s)	225, 286, 635, 1082, 1382, 2015
Lsp1109I	GCAGC	6 cut(s)	559, 782, 1180, 1654, 1871, 2005
MaeI	CTAG	6 cut(s)	38, 302, 699, 1358, 1479, 1769
MaeII	ACGT	5 cut(s)	199, 541, 618, 1423, 1908
MaeIII	GTNAC	8 cut(s)	26, 152, 200, 827, 1297, 1445, 2188, 2195
MboII	GAAGA	6 cut(s)	238, 555, 557, 791, 875, 1257
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	4 cut(s)	163, 1462, 2088, 2129
MhlI	GDGCHC	2 cut(s)	729, 2165
MlsI	TGGCCA	2 cut(s)	1442, 2138
MluNI	TGGCCA	2 cut(s)	1442, 2138
MlyI	GAGTC	1 cut(s)	301
MmeI	TCCRAC	1 cut(s)	1157
Mox20I	TGGCCA	2 cut(s)	1442, 2138
Mph1103I	ATGCAT	1 cut(s)	1570
MroI	TCCGGA	1 cut(s)	119
MscI	TGGCCA	2 cut(s)	1442, 2138
MseI	TTAA	8 cut(s)	857, 917, 966, 1265, 1661, 1952, 2145, 2157
MslI	CAYNNNNRTG	4 cut(s)	267, 353, 989, 1567
Msp20I	TGGCCA	2 cut(s)	1442, 2138
MspI	CCGG	5 cut(s)	120, 177, 1257, 1542, 1899
MspR9I	CCNGG	7 cut(s)	230, 669, 825, 1638, 1650, 1809, 1900
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	6 cut(s)	230, 669, 825, 1638, 1650, 1809
MvnI	CGCG	4 cut(s)	184, 628, 1803, 1833
MwoI	GCNNNNNNNGC	6 cut(s)	770, 1382, 1559, 1790, 1809, 2027
NciI	CCSGG	1 cut(s)	1900
NcoI	CCATGG	2 cut(s)	774, 1437
NlaIV	GGNNCC	5 cut(s)	124, 335, 822, 1084, 2026
NmuCI	GTSAC	4 cut(s)	26, 152, 827, 2195
NruI	TCGCGA	1 cut(s)	1803
NsiI	ATGCAT	1 cut(s)	1570
NspI	RCATGY	5 cut(s)	19, 462, 1316, 1568, 2196
PagI	TCATGA	2 cut(s)	954, 1611
PceI	AGGCCT	1 cut(s)	1645
PciI	ACATGT	2 cut(s)	1312, 2192
PctI	GAATGC	1 cut(s)	242
PfeI	GAWTC	7 cut(s)	938, 958, 979, 994, 1684, 1892, 2099
PflMI	CCANNNNNTGG	1 cut(s)	235
PfoI	TCCNGGA	1 cut(s)	228
PinAI	ACCGGT	1 cut(s)	1541
PkrI	GCNGC	7 cut(s)	574, 772, 1170, 1669, 1886, 2020, 2185
PleI	GAGTC	1 cut(s)	300
PmaCI	CACGTG	1 cut(s)	619
PmlI	CACGTG	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	300
Ppu21I	YACGTR	3 cut(s)	542, 619, 1909
PscI	ACATGT	2 cut(s)	1312, 2192
Psp1406I	AACGTT	1 cut(s)	199
Psp6I	CCWGG	6 cut(s)	228, 667, 823, 1636, 1648, 1807
PspCI	CACGTG	1 cut(s)	619
PspEI	GGTNACC	1 cut(s)	827
PspFI	CCCAGC	2 cut(s)	216, 2021
PspGI	CCWGG	6 cut(s)	228, 667, 823, 1636, 1648, 1807
PspN4I	GGNNCC	5 cut(s)	124, 335, 822, 1084, 2026
PspPI	GGNCC	4 cut(s)	179, 476, 899, 2025
PsrI	GAACNNNNNNTAC	2 cut(s)	416, 448
PsuI	RGATCY	4 cut(s)	163, 1462, 2088, 2129
RruI	TCGCGA	1 cut(s)	1803
RsaI	GTAC	9 cut(s)	61, 82, 434, 661, 872, 1116, 1160, 1483, 1540
RsaNI	GTAC	9 cut(s)	60, 81, 433, 660, 871, 1115, 1159, 1482, 1539
RseI	CAYNNNNRTG	4 cut(s)	267, 353, 989, 1567
SalI	GTCGAC	1 cut(s)	87
SaqAI	TTAA	8 cut(s)	857, 917, 966, 1265, 1661, 1952, 2145, 2157
SatI	GCNGC	7 cut(s)	573, 771, 1169, 1668, 1885, 2019, 2184
Sau96I	GGNCC	4 cut(s)	179, 476, 899, 2025
ScaI	AGTACT	3 cut(s)	82, 872, 1483
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	7 cut(s)	230, 669, 825, 1638, 1650, 1809, 1900
SduI	GDGCHC	2 cut(s)	729, 2165
SinI	GGWCC	2 cut(s)	476, 2025
SmiMI	CAYNNNNRTG	4 cut(s)	267, 353, 989, 1567
SmlI	CTYRAG	3 cut(s)	874, 1027, 1849
SmoI	CTYRAG	3 cut(s)	874, 1027, 1849
SpeI	ACTAGT	1 cut(s)	1478
SseBI	AGGCCT	1 cut(s)	1645
SsiI	CCGC	3 cut(s)	182, 2028, 2184
SspI	AATATT	1 cut(s)	909
SspMI	CTAG	6 cut(s)	38, 302, 699, 1358, 1479, 1769
StuI	AGGCCT	1 cut(s)	1645
StyD4I	CCNGG	7 cut(s)	228, 667, 823, 1636, 1648, 1807, 1898
StyI	CCWWGG	4 cut(s)	445, 774, 1206, 1437
TaaI	ACNGT	9 cut(s)	26, 470, 718, 1163, 1416, 1817, 2077, 2143, 2167
TaiI	ACGT	5 cut(s)	202, 544, 621, 1426, 1911
TaqI	TCGA	5 cut(s)	21, 88, 108, 566, 1243
TatI	WGTACW	3 cut(s)	80, 870, 1481
TauI	GCSGC	1 cut(s)	2186
TfiI	GAWTC	7 cut(s)	938, 958, 979, 994, 1684, 1892, 2099
Tru1I	TTAA	8 cut(s)	857, 917, 966, 1265, 1661, 1952, 2145, 2157
Tru9I	TTAA	8 cut(s)	857, 917, 966, 1265, 1661, 1952, 2145, 2157
TscAI	CASTG	7 cut(s)	729, 736, 1197, 1421, 1894, 2116, 2146
TseFI	GTSAC	4 cut(s)	26, 152, 827, 2195
TseI	GCWGC	6 cut(s)	572, 770, 1168, 1667, 1884, 2018
Tsp45I	GTSAC	4 cut(s)	26, 152, 827, 2195
TspDTI	ATGAA	6 cut(s)	371, 384, 876, 971, 1740, 1955
TspRI	CASTG	7 cut(s)	729, 736, 1197, 1421, 1894, 2116, 2146
Van91I	CCANNNNNTGG	1 cut(s)	235
VneI	GTGCAC	1 cut(s)	2161
VpaK11BI	GGWCC	2 cut(s)	476, 2025
XapI	RAATTY	5 cut(s)	326, 382, 652, 852, 2040
XceI	RCATGY	5 cut(s)	19, 462, 1316, 1568, 2196
XmiI	GTMKAC	2 cut(s)	88, 1004
XspI	CTAG	6 cut(s)	38, 302, 699, 1358, 1479, 1769
ZrmI	AGTACT	3 cut(s)	82, 872, 1483
Zsp2I	ATGCAT	1 cut(s)	1570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.