Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003728

Physical Location & Seq

Genomic Coordinates Forward (+)

39934035 .. 39938635

Gene Structure 4601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1315800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2223 bp

ATGCTTCAGCCAAGCATGTTCGAGAATCACATCCTAGATCATATGACGACGAGCAGTACCCACAAAACCTCAGATAGTACTGGCCGACTGCTGGACGATGACTTCGAGACTAAATCCGGCACCGAAACGACTATGGACGCTCCTTCCGGTGACGAGCAAGATCCCAACGCCACCGGCCCGCGCCCCAAAAGAAAACGTTACCATCGTCACACCCAGCGCCAAATTCAGGAGATGGAAGCATTCTTCAAGGACTGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTGAGTCGTGAACTAGGGTTAGAGCCTTTGCAAGTCAAATTCTGGTTCCAAAACAAGCGCACCCAAATGAAGGCCCAACATGAACGCCATGAGAATTCAATTTTGAAATCTGAGAACGACAAGCTTCGTGCCGAGAACAATAGGTACAAGGAAGCCCTTGCCAATGCCACATGCCCCAACTGTGGAGGACCAGCTGCGATTGGGGAGATGTCATTTGATGAGCAACATTTGAGGATTGAAAATGCTCGTTTACATGAAGAGATTGATAAGATATCTTCGATTGCTGCCAAATATGTTGGGAAGCCTTTGACGAGCTCATTTTCCTCTCACATGCCATCTCATGTGCCTTCCGGCCGCTCCCTTGATCTTGGGGTTGGCAGTTTTGGTACTCAGCCAGGCTTCGTAGGAGAAATGTATGGATCATCTACTGATCTTCTCAGGTCGGTTTCAGTGCTCACTGAGGCTGATAAGCCGATGATCGTTGAGCTTGCCGTTGCAGCCATGGAAGAACTAATTAGAATGGCCGAGGCTGGAGACCCTTTATGGGTTCCTGGTGACCATAACTCAATTCACCAAGAGATTTTAAACGAAGACGAGTACTTGAGGACATTTCCGAGGGGGATTGGCCCTAAACCATTGGGCTTAAAGTCTGAGGCTTCAAGAGAAACAGCATTGGTCATCATGAATCATGTTAACCTTGTTGAGATTCTCATGGATGTGAATCAATGGTCTACCGTCTTTTGTGGTATTGTCTCAAGAGCAATGACCCTTGATATCCTATCAACTGGAGTAGCTGGAAACTACAATGGAGCCTTGCAAGTGATGACTGCTGAGTTTCAAGTACCCTCACCACTCGTTCCAACCCGTGAGAATTACTTTGTAAGGTACTGTAAGCAGAATGTTGATGGAACTTGGGCAGTCGTTGATGTTTCTTTGGACAACCTACGCCAAAGTCCAGTTTCAAGAAGTCGAAGAAGGCCATCCGGCTGCTTAATACAAGAATTGCAAAATGGCTACTCCAAGGTTATATGGGTGGAACATGTTGAAGTGGATGATAGTGCTGTTCACAACATATACAGACCACTAGTCAATTCTGGTCTTGCCTTTGGAGCTAAGCGTTGGGTGGCTACACTTGATAGACAGTGCCAACGTCTTGCGAGTTCCATGGCCAGTAACATTCCTGCTGGAGAGCTTTGTGTGATAACTAGTGCTGAAGGGAGGAAAAGTATGTTGAAGCTGGCACAAAGATTGGTGATGAGCTTCTGTACCGGTGTTGGTGCTTCTACTGCACATGCATGGACTACATTATCAGCAACGGGTTCAGATGATGTGAGGGTCATGACCCGAAAAAGTATGGACGATCCTGGCAGGCCTCCTGGGATTGTTCTAAGTGCTGCAACTTCCTTCTGGATTCCTGTTCCTCCCAAGAGAGTTTTCGATTTCCTGCGGGATGAAAACTCTCGTAGTGAGTGGGATATACTTTCAAACGGTGGGCTAGTTCAAGAGATGGCACACATAGCTAATGGTCGTGATCCAGGCAACTGTGTCTCCCTACTTCGCGTAAATAGTGCAAATTCAAGCCAAAGCAATATGCTGATACTTCAGGAAAGCTGCACTGATTCAACCGGGTCATACGTGATTTATGCACCAGTTGATATCGTGGCCATGAATGTCGTGTTAAGTGGTGGAGACCCAGATTATGTAGCACTTCTGCCCTCAGGTTTTGCCATCCTTCCAGATGGACCTGCTGGGTCCGCAGGAGGAGGAAACCTTGATGTTGGCTCTGGTGGGTCTCTACTCACAGTAGCATTTCAGATCTTGGTTGATTCAGTTCCTACTGCCAAACTATCTCTGGGATCTGTGGCTACTGTTAACAATCTAATTAAGTGCACGGTTGAGCGTATTAGAGCCGCGGTTACATGTGAACAAAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009790 GO:0009791 GO:0009793 GO:0009845 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0061458 GO:0065007 GO:0080090 GO:0090351 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

741

Amino Acids

80.93

Weight (kDa)

5.74

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	64 - 119	6.2e-18	Homeodomain
START	PF01852	258 - 479	4.2e-51	START domain
PDF2_C	PF25797	498 - 736	2.1e-101	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04890 AT4G04890 AT4G21750 AT4G21750 AT4G21750 AT4G21750
fragaria_vesca	FvH4_3g02520 FvH4_3g02520 FvH4_3g02520 FvH4_3g02520
malus_domestica	MD05G1342200.v1.1 MD10G1315800.v1.1
prunus_persica	Prupe.4G024800_v2.0.a1 Prupe.4G024800_v2.0.a1 Prupe.4G024800_v2.0.a1
pyrus_communis	pycom05g31150
rosa_chinensis	RchiOBHm_Chr5g0003831
rosa_laevigata	RLG00000031179
rosa_multiflora	Rmu_sc0010187.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072160
rosa_rugosa	Rorug04G0407000 Rorug04G0407100 Rorug04G0407100 Rorug04G0407200 Rorug04G0407300 Rorug04G0407400 Rorug04G0407400 Rorug04G0407500 Rorug04G0407500
rosa_samantha	Rh5AG034500 Rh5BG032800 Rh5CG036900 Rh5DG033200
rosa_wichuraiana	Rw5G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2038
AccB1I	GGYRCC	1 cut(s)	119
AccBSI	CCGCTC	1 cut(s)	642
AccI	GTMKAC	1 cut(s)	1016
AccII	CGCG	3 cut(s)	181, 1845, 2198
AciI	CCGC	6 cut(s)	179, 640, 1732, 2040, 2196, 2198
AclI	AACGTT	1 cut(s)	196
AclWI	GGATC	5 cut(s)	155, 712, 1640, 1811, 2149
AcoI	YGGCCR	5 cut(s)	82, 637, 807, 1452, 1947
AcsI	RAATTY	4 cut(s)	222, 323, 379, 1858
AcuI	CTGAAG	2 cut(s)	1518, 1871
AfaI	GTAC	8 cut(s)	58, 79, 431, 673, 884, 1128, 1172, 1552
AfiI	CCNNNNNNNGG	5 cut(s)	91, 226, 355, 467, 829
AflIII	ACRYGT	2 cut(s)	1324, 2204
AgeI	ACCGGT	1 cut(s)	1553
AhdI	GACNNNNNGTC	1 cut(s)	1370
AhlI	ACTAGT	2 cut(s)	1369, 1490
AjnI	CCWGG	5 cut(s)	679, 835, 1648, 1660, 1819
AjuI	GAANNNNNNNTTGG	2 cut(s)	1703, 1735
Alw21I	GWGCWC	3 cut(s)	602, 741, 2177
Alw26I	GTCTC	6 cut(s)	101, 813, 1042, 1837, 1968, 2082
Alw44I	GTGCAC	1 cut(s)	2173
AlwI	GGATC	5 cut(s)	155, 712, 1640, 1811, 2149
ApaLI	GTGCAC	1 cut(s)	2173
ApeKI	GCWGC	6 cut(s)	479, 569, 782, 1272, 1679, 1896
ApoI	RAATTY	4 cut(s)	222, 323, 379, 1858
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AsiGI	ACCGGT	1 cut(s)	1553
AspLEI	GCGC	3 cut(s)	183, 219, 345
AspS9I	GGNCC	6 cut(s)	176, 358, 473, 911, 2027, 2037
AsuC2I	CCSGG	1 cut(s)	1912
AsuHPI	GGTGA	6 cut(s)	161, 251, 848, 851, 1125, 1549
AvaII	GGWCC	3 cut(s)	473, 2027, 2037
AxyI	CCTNAGG	1 cut(s)	2002
BaeGI	GKGCMC	1 cut(s)	2177
BalI	TGGCCA	2 cut(s)	1454, 1949
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	602
BbsI	GAAGAC	1 cut(s)	882
Bbv12I	GWGCWC	3 cut(s)	602, 741, 2177
BbvI	GCAGC	6 cut(s)	466, 556, 794, 1259, 1666, 1883
BccI	CCATC	8 cut(s)	210, 226, 628, 1184, 1273, 1786, 2018, 2021
BceAI	ACGGC	1 cut(s)	761
BciT130I	CCWGG	5 cut(s)	681, 837, 1650, 1662, 1821
BcnI	CCSGG	1 cut(s)	1912
BcoDI	GTCTC	6 cut(s)	101, 813, 1042, 1837, 1968, 2082
BcuI	ACTAGT	2 cut(s)	1369, 1490
BfaI	CTAG	5 cut(s)	35, 299, 1370, 1491, 1781
BfoI	RGCGCY	1 cut(s)	220
BfuAI	ACCTGC	1 cut(s)	2038
BglII	AGATCT	1 cut(s)	2100
BisI	GCNGC	8 cut(s)	480, 570, 640, 783, 1273, 1680, 1897, 2196
BlpI	GCTNAGC	1 cut(s)	1398
BlsI	GCNGC	8 cut(s)	481, 571, 641, 784, 1274, 1681, 1898, 2197
BmcAI	AGTACT	2 cut(s)	79, 884
Bme1390I	CCNGG	6 cut(s)	681, 837, 1650, 1662, 1821, 1912
Bme18I	GGWCC	3 cut(s)	473, 2027, 2037
BmeRI	GACNNNNNGTC	1 cut(s)	1370
BmgT120I	GGNCC	6 cut(s)	176, 358, 473, 911, 2027, 2037
BmiI	GGNNCC	5 cut(s)	121, 332, 834, 1096, 2038
BmrFI	CCNGG	6 cut(s)	681, 837, 1650, 1662, 1821, 1912
BpiI	GAAGAC	1 cut(s)	882
BpmI	CTGGAG	3 cut(s)	837, 1092, 1491
Bpu1102I	GCTNAGC	1 cut(s)	1398
BpuEI	CTTGAG	2 cut(s)	907, 1024
BpuMI	CCSGG	1 cut(s)	1912
BsaAI	YACGTR	1 cut(s)	1921
BsaBI	GATNNNNATC	1 cut(s)	1005
BsaI	GGTCTC	3 cut(s)	813, 1968, 2082
BsaJI	CCNNGG	7 cut(s)	786, 810, 899, 1305, 1449, 1661, 2196
BsaWI	WCCGGW	2 cut(s)	146, 1553
BsaXI	ACNNNNNCTCC	4 cut(s)	1495, 1525, 1817, 1847
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 226, 355, 467, 829
Bse118I	RCCGGY	2 cut(s)	173, 1553
Bse1I	ACTGG	5 cut(s)	85, 1075, 1241, 1455, 1934
Bse21I	CCTNAGG	1 cut(s)	2002
Bse3DI	GCAATG	1 cut(s)	1053
Bse8I	GATNNNNATC	1 cut(s)	1005
BseBI	CCWGG	5 cut(s)	681, 837, 1650, 1662, 1821
BseDI	CCNNGG	7 cut(s)	786, 810, 899, 1305, 1449, 1661, 2196
BseGI	GGATG	6 cut(s)	30, 1006, 1265, 1342, 1741, 2013
BseJI	GATNNNNATC	1 cut(s)	1005
BseLI	CCNNNNNNNGG	5 cut(s)	91, 226, 355, 467, 829
BseMI	GCAATG	1 cut(s)	1053
BseMII	CTCAG	9 cut(s)	84, 278, 387, 689, 735, 736, 927, 1107, 2016
BseNI	ACTGG	5 cut(s)	85, 1075, 1241, 1455, 1934
BseRI	GAGGAG	1 cut(s)	2061
BseSI	GKGCMC	1 cut(s)	2177
BseX3I	CGGCCG	1 cut(s)	637
BseXI	GCAGC	6 cut(s)	466, 556, 794, 1259, 1666, 1883
BseYI	CCCAGC	2 cut(s)	213, 2033
BsgI	GTGCAG	2 cut(s)	1557, 1882
Bsh1236I	CGCG	3 cut(s)	181, 1845, 2198
Bsh1285I	CGRYCG	1 cut(s)	640
BshNI	GGYRCC	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	1553
BsiEI	CGRYCG	1 cut(s)	640
BsiHKAI	GWGCWC	3 cut(s)	602, 741, 2177
BsiSI	CCGG	7 cut(s)	117, 147, 174, 636, 1269, 1554, 1911
BslI	CCNNNNNNNGG	5 cut(s)	91, 226, 355, 467, 829
BsmAI	GTCTC	6 cut(s)	101, 813, 1042, 1837, 1968, 2082
BsmI	GAATGC	1 cut(s)	239
Bso31I	GGTCTC	3 cut(s)	813, 1968, 2082
Bsp1286I	GDGCHC	3 cut(s)	602, 741, 2177
Bsp1720I	GCTNAGC	1 cut(s)	1398
Bsp19I	CCATGG	2 cut(s)	786, 1449
BspACI	CCGC	6 cut(s)	179, 640, 1732, 2040, 2196, 2198
BspCNI	CTCAG	9 cut(s)	83, 279, 388, 688, 735, 736, 928, 1108, 2015
BspFNI	CGCG	3 cut(s)	181, 1845, 2198
BspHI	TCATGA	2 cut(s)	966, 1623
BspLI	GGNNCC	5 cut(s)	121, 332, 834, 1096, 2038
BspMI	ACCTGC	1 cut(s)	2038
BspPI	GGATC	5 cut(s)	155, 712, 1640, 1811, 2149
BspT107I	GGYRCC	1 cut(s)	119
BspTNI	GGTCTC	3 cut(s)	813, 1968, 2082
BsrBI	CCGCTC	1 cut(s)	642
BsrDI	GCAATG	1 cut(s)	1053
BsrFI	RCCGGY	2 cut(s)	173, 1553
BsrI	ACTGG	5 cut(s)	85, 1075, 1241, 1455, 1934
BssAI	RCCGGY	2 cut(s)	173, 1553
BssECI	CCNNGG	7 cut(s)	786, 810, 899, 1305, 1449, 1661, 2196
BssT1I	CCWWGG	3 cut(s)	786, 1305, 1449
Bst2UI	CCWGG	5 cut(s)	681, 837, 1650, 1662, 1821
Bst6I	CTCTTC	1 cut(s)	537
BstBAI	YACGTR	1 cut(s)	1921
BstC8I	GCNNGC	4 cut(s)	179, 774, 1524, 1655
BstDSI	CCRYGG	3 cut(s)	786, 1449, 2196
BstEII	GGTNACC	1 cut(s)	839
BstF5I	GGATG	6 cut(s)	30, 1006, 1265, 1342, 1741, 2013
BstFNI	CGCG	3 cut(s)	181, 1845, 2198
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	3 cut(s)	183, 219, 345
BstMAI	GTCTC	6 cut(s)	101, 813, 1042, 1837, 1968, 2082
BstMCI	CGRYCG	1 cut(s)	640
BstMWI	GCNNNNNNNGC	5 cut(s)	782, 1394, 1571, 1802, 2039
BstNI	CCWGG	5 cut(s)	681, 837, 1650, 1662, 1821
BstNSI	RCATGY	6 cut(s)	19, 459, 619, 1328, 1580, 2208
BstPI	GGTNACC	1 cut(s)	839
BstSCI	CCNGG	6 cut(s)	679, 835, 1648, 1660, 1819, 1910
BstSLI	GKGCMC	1 cut(s)	2177
BstUI	CGCG	3 cut(s)	181, 1845, 2198
BstV1I	GCAGC	6 cut(s)	466, 556, 794, 1259, 1666, 1883
BstV2I	GAAGAC	1 cut(s)	882
BstX2I	RGATCY	3 cut(s)	160, 2100, 2141
BstYI	RGATCY	3 cut(s)	160, 2100, 2141
BstZI	CGGCCG	1 cut(s)	637
Bsu36I	CCTNAGG	1 cut(s)	2002
BtgI	CCRYGG	3 cut(s)	786, 1449, 2196
BtsCI	GGATG	6 cut(s)	30, 1006, 1265, 1342, 1741, 2013
BtsIMutI	CAGTG	4 cut(s)	741, 741, 1433, 1899
BveI	ACCTGC	1 cut(s)	2038
Cac8I	GCNNGC	4 cut(s)	179, 774, 1524, 1655
CciI	TCATGA	2 cut(s)	966, 1623
CfoI	GCGC	3 cut(s)	183, 219, 345
Cfr10I	RCCGGY	2 cut(s)	173, 1553
Cfr13I	GGNCC	6 cut(s)	176, 358, 473, 911, 2027, 2037
Cfr42I	CCGCGG	1 cut(s)	2199
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	8 cut(s)	57, 78, 430, 672, 883, 1127, 1171, 1551
CspAI	ACCGGT	1 cut(s)	1553
CviQI	GTAC	8 cut(s)	57, 78, 430, 672, 883, 1127, 1171, 1551
DraI	TTTAAA	1 cut(s)	870
DriI	GACNNNNNGTC	1 cut(s)	1370
EaeI	YGGCCR	5 cut(s)	82, 637, 807, 1452, 1947
EagI	CGGCCG	1 cut(s)	637
Eam1104I	CTCTTC	1 cut(s)	537
Eam1105I	GACNNNNNGTC	1 cut(s)	1370
EarI	CTCTTC	1 cut(s)	537
Ecl136II	GAGCTC	1 cut(s)	600
EclXI	CGGCCG	1 cut(s)	637
Eco130I	CCWWGG	3 cut(s)	786, 1305, 1449
Eco147I	AGGCCT	1 cut(s)	1657
Eco24I	GRGCYC	1 cut(s)	602
Eco31I	GGTCTC	3 cut(s)	813, 1968, 2082
Eco32I	GATATC	3 cut(s)	558, 1060, 1942
Eco47I	GGWCC	3 cut(s)	473, 2027, 2037
Eco52I	CGGCCG	1 cut(s)	637
Eco53kI	GAGCTC	1 cut(s)	600
Eco57I	CTGAAG	2 cut(s)	1518, 1871
Eco81I	CCTNAGG	1 cut(s)	2002
Eco91I	GGTNACC	1 cut(s)	839
EcoICRI	GAGCTC	1 cut(s)	600
EcoO65I	GGTNACC	1 cut(s)	839
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	5 cut(s)	679, 835, 1648, 1660, 1819
EcoRV	GATATC	3 cut(s)	558, 1060, 1942
EcoT14I	CCWWGG	3 cut(s)	786, 1305, 1449
EcoT22I	ATGCAT	1 cut(s)	1582
EcoT38I	GRGCYC	1 cut(s)	602
ErhI	CCWWGG	3 cut(s)	786, 1305, 1449
FauI	CCCGC	2 cut(s)	186, 1725
FauNDI	CATATG	1 cut(s)	42
FblI	GTMKAC	1 cut(s)	1016
Fnu4HI	GCNGC	8 cut(s)	480, 570, 640, 783, 1273, 1680, 1897, 2196
FokI	GGATG	6 cut(s)	17, 1013, 1252, 1349, 1748, 2000
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	8 cut(s)	480, 570, 640, 783, 1273, 1680, 1897, 2196
FspBI	CTAG	5 cut(s)	35, 299, 1370, 1491, 1781
GlaI	GCGC	3 cut(s)	182, 218, 344
GluI	GCNGC	8 cut(s)	480, 570, 640, 783, 1273, 1680, 1897, 2196
GsaI	CCCAGC	2 cut(s)	217, 2037
GsuI	CTGGAG	3 cut(s)	837, 1092, 1491
HaeII	RGCGCY	1 cut(s)	220
HapII	CCGG	7 cut(s)	117, 147, 174, 636, 1269, 1554, 1911
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	3 cut(s)	183, 219, 345
Hin6I	GCGC	3 cut(s)	181, 217, 343
HinP1I	GCGC	3 cut(s)	181, 217, 343
HincII	GTYRAC	2 cut(s)	979, 2158
HindII	GTYRAC	2 cut(s)	979, 2158
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	8 cut(s)	25, 289, 970, 991, 1006, 1696, 1904, 2111
HpaI	GTTAAC	2 cut(s)	979, 2158
HpaII	CCGG	7 cut(s)	117, 147, 174, 636, 1269, 1554, 1911
HphI	GGTGA	6 cut(s)	161, 251, 848, 851, 1125, 1549
Hpy166II	GTNNAC	8 cut(s)	296, 536, 979, 1017, 1351, 2158, 2175, 2210
Hpy188I	TCNGA	6 cut(s)	73, 397, 900, 937, 1609, 2100
Hpy8I	GTNNAC	8 cut(s)	296, 536, 979, 1017, 1351, 2158, 2175, 2210
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	8 cut(s)	153, 274, 349, 642, 1254, 1493, 1699, 2027
HpyCH4IV	ACGT	3 cut(s)	196, 1435, 1920
HpyF10VI	GCNNNNNNNGC	5 cut(s)	782, 1394, 1571, 1802, 2039
HpySE526I	ACGT	3 cut(s)	196, 1435, 1920
HspAI	GCGC	3 cut(s)	181, 217, 343
KspAI	GTTAAC	2 cut(s)	979, 2158
KspI	CCGCGG	1 cut(s)	2199
LmnI	GCTCC	5 cut(s)	145, 283, 647, 1094, 1394
Lsp1109I	GCAGC	6 cut(s)	466, 556, 794, 1259, 1666, 1883
MaeI	CTAG	5 cut(s)	35, 299, 1370, 1491, 1781
MaeII	ACGT	3 cut(s)	196, 1435, 1920
MaeIII	GTNAC	6 cut(s)	149, 197, 206, 839, 1457, 2200
MbiI	CCGCTC	1 cut(s)	642
MboII	GAAGA	7 cut(s)	235, 552, 554, 710, 803, 887, 1269
MflI	RGATCY	3 cut(s)	160, 2100, 2141
MhlI	GDGCHC	3 cut(s)	602, 741, 2177
MlsI	TGGCCA	2 cut(s)	1454, 1949
MluNI	TGGCCA	2 cut(s)	1454, 1949
MlyI	GAGTC	1 cut(s)	298
MmeI	TCCRAC	1 cut(s)	1169
Mox20I	TGGCCA	2 cut(s)	1454, 1949
Mph1103I	ATGCAT	1 cut(s)	1582
MscI	TGGCCA	2 cut(s)	1454, 1949
MseI	TTAA	7 cut(s)	869, 929, 978, 1277, 1964, 2157, 2169
MslI	CAYNNNNRTG	4 cut(s)	264, 350, 1001, 1579
Msp20I	TGGCCA	2 cut(s)	1454, 1949
MspA1I	CMGCKG	2 cut(s)	479, 2198
MspI	CCGG	7 cut(s)	117, 147, 174, 636, 1269, 1554, 1911
MspR9I	CCNGG	6 cut(s)	681, 837, 1650, 1662, 1821, 1912
Mva1269I	GAATGC	1 cut(s)	239
MvaI	CCWGG	5 cut(s)	681, 837, 1650, 1662, 1821
MvnI	CGCG	3 cut(s)	181, 1845, 2198
MwoI	GCNNNNNNNGC	5 cut(s)	782, 1394, 1571, 1802, 2039
NciI	CCSGG	1 cut(s)	1912
NcoI	CCATGG	2 cut(s)	786, 1449
NdeI	CATATG	1 cut(s)	42
NlaIV	GGNNCC	5 cut(s)	121, 332, 834, 1096, 2038
NmeAIII	GCCGAG	2 cut(s)	442, 835
NmuCI	GTSAC	3 cut(s)	149, 206, 839
NsiI	ATGCAT	1 cut(s)	1582
NspI	RCATGY	6 cut(s)	19, 459, 619, 1328, 1580, 2208
PagI	TCATGA	2 cut(s)	966, 1623
PceI	AGGCCT	1 cut(s)	1657
PciI	ACATGT	2 cut(s)	1324, 2204
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 202
PctI	GAATGC	1 cut(s)	239
PfeI	GAWTC	7 cut(s)	25, 970, 991, 1006, 1696, 1904, 2111
PinAI	ACCGGT	1 cut(s)	1553
PkrI	GCNGC	8 cut(s)	481, 571, 641, 784, 1274, 1681, 1898, 2197
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
Ppu21I	YACGTR	1 cut(s)	1921
PscI	ACATGT	2 cut(s)	1324, 2204
Psp124BI	GAGCTC	1 cut(s)	602
Psp1406I	AACGTT	1 cut(s)	196
Psp6I	CCWGG	5 cut(s)	679, 835, 1648, 1660, 1819
PspEI	GGTNACC	1 cut(s)	839
PspFI	CCCAGC	2 cut(s)	213, 2033
PspGI	CCWGG	5 cut(s)	679, 835, 1648, 1660, 1819
PspN4I	GGNNCC	5 cut(s)	121, 332, 834, 1096, 2038
PspPI	GGNCC	6 cut(s)	176, 358, 473, 911, 2027, 2037
PsrI	GAACNNNNNNTAC	2 cut(s)	413, 445
PsuI	RGATCY	3 cut(s)	160, 2100, 2141
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	8 cut(s)	58, 79, 431, 673, 884, 1128, 1172, 1552
RsaNI	GTAC	8 cut(s)	57, 78, 430, 672, 883, 1127, 1171, 1551
RseI	CAYNNNNRTG	4 cut(s)	264, 350, 1001, 1579
SacI	GAGCTC	1 cut(s)	602
SacII	CCGCGG	1 cut(s)	2199
SaqAI	TTAA	7 cut(s)	869, 929, 978, 1277, 1964, 2157, 2169
SatI	GCNGC	8 cut(s)	480, 570, 640, 783, 1273, 1680, 1897, 2196
Sau96I	GGNCC	6 cut(s)	176, 358, 473, 911, 2027, 2037
ScaI	AGTACT	2 cut(s)	79, 884
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	6 cut(s)	681, 837, 1650, 1662, 1821, 1912
SduI	GDGCHC	3 cut(s)	602, 741, 2177
Sfr303I	CCGCGG	1 cut(s)	2199
SgrBI	CCGCGG	1 cut(s)	2199
SinI	GGWCC	3 cut(s)	473, 2027, 2037
SmiMI	CAYNNNNRTG	4 cut(s)	264, 350, 1001, 1579
SmlI	CTYRAG	2 cut(s)	886, 1039
SmoI	CTYRAG	2 cut(s)	886, 1039
SpeI	ACTAGT	2 cut(s)	1369, 1490
SseBI	AGGCCT	1 cut(s)	1657
SsiI	CCGC	6 cut(s)	179, 640, 1732, 2040, 2196, 2198
SspMI	CTAG	5 cut(s)	35, 299, 1370, 1491, 1781
SstI	GAGCTC	1 cut(s)	602
StuI	AGGCCT	1 cut(s)	1657
StyD4I	CCNGG	6 cut(s)	679, 835, 1648, 1660, 1819, 1910
StyI	CCWWGG	3 cut(s)	786, 1305, 1449
TaiI	ACGT	3 cut(s)	199, 1438, 1923
TaqI	TCGA	5 cut(s)	21, 105, 563, 1255, 1722
TatI	WGTACW	2 cut(s)	77, 882
TauI	GCSGC	2 cut(s)	642, 2198
TfiI	GAWTC	7 cut(s)	25, 970, 991, 1006, 1696, 1904, 2111
Tru1I	TTAA	7 cut(s)	869, 929, 978, 1277, 1964, 2157, 2169
Tru9I	TTAA	7 cut(s)	869, 929, 978, 1277, 1964, 2157, 2169
TscAI	CASTG	4 cut(s)	741, 748, 1433, 1906
TseFI	GTSAC	3 cut(s)	149, 206, 839
TseI	GCWGC	6 cut(s)	479, 569, 782, 1272, 1679, 1896
Tsp45I	GTSAC	3 cut(s)	149, 206, 839
TspDTI	ATGAA	6 cut(s)	368, 381, 555, 983, 1752, 1967
TspRI	CASTG	4 cut(s)	741, 748, 1433, 1906
VneI	GTGCAC	1 cut(s)	2173
VpaK11BI	GGWCC	3 cut(s)	473, 2027, 2037
XapI	RAATTY	4 cut(s)	222, 323, 379, 1858
XceI	RCATGY	6 cut(s)	19, 459, 619, 1328, 1580, 2208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2134
XmiI	GTMKAC	1 cut(s)	1016
XspI	CTAG	5 cut(s)	35, 299, 1370, 1491, 1781
ZrmI	AGTACT	2 cut(s)	79, 884
Zsp2I	ATGCAT	1 cut(s)	1582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.