Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003728

Physical Location & Seq

Genomic Coordinates Forward (+)

93292086 .. 93297860

Gene Structure 5775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2100 bp

ATGTTTCAGCCAAGCATGTTCGACAGCCACCATATGAGTATGCTGGACATGTCGACCCACAAAAGCTCTGAGAGTGATATGGGAAGGAGCCGGGATGATGATTTTGAGACAAAATCCGGCACTGAAACAACAGATGCTCCCTCTGGAGATGAACTAGATCCCTCCCAACCTCGCCCCAAAAGGAAACGGTACCACCGCCACACACAGCGCCAAATCCAGGAAATGGAAGCATTCTTCAAGGAGTGTCCGCACCCAGATGACAAGCAGAGAAAGGAGCTGAGCCGGGAGCTAGGGTTAGAGCCTTTGCAGGTCAAATTCTGGTTTCAAAATAAGCGAACCCAAATGAAGGCCCAACATGAACGGCATGAGAATTCGATTTTGAAAAATGAAAATGACAAGCTTCGTGCTGAGAACAATCGATACAAGGAAGCCCTCAGCAATGCCACATGCCCCAACTGTGGAGGTCCGGCTGCTCTTGGTGAGATGTCCTTTGATGAGCAACATTTGAGGATCGAAAATGCTCGTTTACGTGAAGAGGGCCTTCCCCGCTCCCTTGATCTCGCCGTTGGCAGTTTTGGGGCTTCACAGTCGGGTTATGTAGGAGAAATGTATGGATCTGGTGACCTTCTCAGATCAGTTTCAGTGCCTACTGATGCTGACAAGCCCTTGATTGTTGAGCTTGCTGTGGCAGCCATGGAAGAACTCATTAGAATGGCTCAGGCTGGAGACCCTTTATGGGTTCCTGCTCATGACAACAGCTCATCAACTCATCATGATATTCTAAATGAAGACGAATACTTGAGGACGTTTCCTAGGGGTATTGGCCCTAAACCATTGGGCTTAAAATCTGAAGCTTCAAGAGAATCAGCATTGGTCATCATGAATCACGTTAACCTTGTTGAGATTCTTATGGATGTGAACCAGTGGTCTACTGTGTTCTGTGGTATTGTTTCAAGAGCAATGACCCTTGACATCCTATCAACCGGAGTAGCTGGAAACTACAACGGAGCCTTGCAAGTGATGTCAGCTGAGTTCCAAGTTCCCTCACCGCTTGTTCCAACTCGTGAGAACTACTTTGTAAGGTACTGTAAGCAGCATACTGATGGAACTTGGGCAGTGGTTGATGTTTCCTTGGATAATTTACGCCCAAGTTCAATTTCAAGAAGTCGTAGAAGGCCATCCGGTTGCTTAATCCAAGAATTGCCTAATGGTTACTCCAAGGTTGTATGGGTGGAACACGTAGAAGTGGATGATAGAGCTGTTCACAACATTTACAGACCACTAGTAAACTCTGGTCTTGCATTTGGAGCCAAGCGTTGGGTTGCTACACTTGATAGACAATGTGAACGTCTTGCCAGTTCATTGGCCAACAATATTCCGGCTGGAGATCTCTGTGTCATAACTAGTGCAGAAGGGAGGAAAAGTATGTTGAAGCTCGCGCAAAGGATGGTGTTGAGCTTTTGCACTGGCGTTGGTGCTTCTACGGCACACGCGTGGTGGACGACATTGTCAGCAACAGGCTCTGATGATGTGAGGGTCATGACCAGGAAAAGCATGGATGATCCTGGCAGGCCTCCTGGCATTGTTCTAAGTGCTGCAACTTCCTTCTGGCTTCCAGTTCCTCCCAAGAGATGGGATATCCTTTCAAATGGTGGCCTAGTGCAAGAGATGGCACACATAGCTAACGGTCGTGATCCTGGTAACTGCGTCTCCTTATTGCGTGTAAATAGTGCAAATTCTAGTCAAAGCAACATGCTGATACTCCAGGAGAGCTGCACAGATTCAACAGGGTCGTATGTGATATATGCTCCAGTCGATATTGTGGCCATGAATGTCGTGTTGAGTGGGGGTGACCCTGATTATGTTGCACTTCTGCCATCGGGTTTTGCTATATTACCTGATGGTCCTCCTGCTGGAGGAGCCGGAGGAATTCTTGATGTTGGTTCTGGTGGATCTCTACTGACAGTAGCATTTCAGATCCTAGTTGATTCAGTTCCTACTGCAAAACTCTCGCTTGGATCTGTGGCCACTGTTAACAATCTGATTAAGTGCACTGTTGAGCGGATTAGAGCTGCGGTTACATGTGATCAGAACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009790 GO:0009791 GO:0009793 GO:0009845 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0061458 GO:0065007 GO:0080090 GO:0090351 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

699

Amino Acids

76.53

Weight (kDa)

5.81

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	61 - 116	4.5e-18	Homeodomain
START	PF01852	227 - 450	5.7e-53	START domain
PDF2_C	PF25797	469 - 695	1.4e-85	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04890 AT4G04890 AT4G21750 AT4G21750 AT4G21750 AT4G21750
fragaria_vesca	FvH4_3g02520 FvH4_3g02520 FvH4_3g02520 FvH4_3g02520
malus_domestica	MD05G1342200.v1.1 MD10G1315800.v1.1
prunus_persica	Prupe.4G024800_v2.0.a1 Prupe.4G024800_v2.0.a1 Prupe.4G024800_v2.0.a1
pyrus_communis	pycom05g31150
rosa_chinensis	RchiOBHm_Chr5g0003831
rosa_laevigata	RLG00000031179
rosa_multiflora	Rmu_sc0010187.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072160
rosa_rugosa	Rorug04G0407000 Rorug04G0407100 Rorug04G0407100 Rorug04G0407200 Rorug04G0407300 Rorug04G0407400 Rorug04G0407400 Rorug04G0407500 Rorug04G0407500
rosa_samantha	Rh5AG034500 Rh5BG032800 Rh5CG036900 Rh5DG033200
rosa_wichuraiana	Rw5G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1507
Acc36I	ACCTGC	1 cut(s)	298
Acc65I	GGTACC	1 cut(s)	189
AccB1I	GGYRCC	1 cut(s)	189
AccB7I	CCANNNNNTGG	3 cut(s)	223, 1317, 1632
AccBSI	CCGCTC	2 cut(s)	549, 2062
AccI	GTMKAC	2 cut(s)	53, 929
AccII	CGCG	2 cut(s)	1439, 1493
AciI	CCGC	6 cut(s)	196, 248, 547, 1049, 2062, 2075
AclWI	GGATC	8 cut(s)	152, 518, 622, 1556, 1688, 1960, 1972, 2026
AcoI	YGGCCR	3 cut(s)	1365, 1824, 2025
AcsI	RAATTY	4 cut(s)	314, 370, 1735, 1929
AcuI	CTGAAG	1 cut(s)	870
AfaI	GTAC	2 cut(s)	191, 1085
AfiI	CCNNNNNNNGG	9 cut(s)	217, 223, 346, 458, 736, 1317, 1632, 1913, 1916
AflIII	ACRYGT	4 cut(s)	48, 1237, 1491, 2081
AhlI	ACTAGT	2 cut(s)	1282, 1403
AjnI	CCWGG	6 cut(s)	216, 1544, 1564, 1576, 1696, 1764
AjuI	GAANNNNNNNTTGG	2 cut(s)	1141, 1173
AleI	CACNNNNGTG	1 cut(s)	1492
Alw21I	GWGCWC	1 cut(s)	2054
Alw26I	GTCTC	3 cut(s)	101, 720, 1714
Alw44I	GTGCAC	1 cut(s)	2050
AlwI	GGATC	8 cut(s)	152, 518, 622, 1556, 1688, 1960, 1972, 2026
AlwNI	CAGNNNCTG	1 cut(s)	1523
AoxI	GGCC	9 cut(s)	348, 538, 823, 1175, 1365, 1571, 1654, 1824, 2025
ApaLI	GTGCAC	1 cut(s)	2050
ApeKI	GCWGC	6 cut(s)	470, 689, 1093, 1595, 1773, 2072
ApoI	RAATTY	4 cut(s)	314, 370, 1735, 1929
Asp718I	GGTACC	1 cut(s)	189
AspA2I	CCTAGG	1 cut(s)	812
AspLEI	GCGC	2 cut(s)	210, 1441
AspS9I	GGNCC	5 cut(s)	349, 464, 538, 824, 1904
AsuC2I	CCSGG	2 cut(s)	92, 284
AsuHPI	GGTGA	4 cut(s)	491, 632, 1038, 1862
AvaII	GGWCC	2 cut(s)	464, 1904
AvrII	CCTAGG	1 cut(s)	812
BaeGI	GKGCMC	1 cut(s)	2054
BalI	TGGCCA	3 cut(s)	1367, 1826, 2027
BanI	GGYRCC	1 cut(s)	189
BauI	CACGAG	1 cut(s)	1062
BbsI	GAAGAC	1 cut(s)	795
Bbv12I	GWGCWC	1 cut(s)	2054
BbvCI	CCTCAGC	1 cut(s)	434
BbvI	GCAGC	6 cut(s)	457, 701, 1105, 1582, 1760, 2059
BccI	CCATC	7 cut(s)	1097, 1186, 1441, 1626, 1663, 1885, 1895
BceAI	ACGGC	3 cut(s)	377, 548, 1500
BcgI	CGANNNNNNTGC	2 cut(s)	1992, 2026
BciT130I	CCWGG	6 cut(s)	218, 1546, 1566, 1578, 1698, 1766
BclI	TGATCA	1 cut(s)	2086
BcnI	CCSGG	2 cut(s)	92, 284
BcoDI	GTCTC	3 cut(s)	101, 720, 1714
BcuI	ACTAGT	2 cut(s)	1282, 1403
BfaI	CTAG	8 cut(s)	155, 290, 813, 1283, 1404, 1658, 1740, 1982
BfoI	RGCGCY	1 cut(s)	211
BfuAI	ACCTGC	1 cut(s)	298
BglII	AGATCT	1 cut(s)	1387
BisI	GCNGC	6 cut(s)	471, 690, 1094, 1596, 1774, 2073
BlnI	CCTAGG	1 cut(s)	812
BlpI	GCTNAGC	1 cut(s)	278
BlsI	GCNGC	6 cut(s)	472, 691, 1095, 1597, 1775, 2074
Bme1390I	CCNGG	8 cut(s)	92, 218, 284, 1546, 1566, 1578, 1698, 1766
Bme18I	GGWCC	2 cut(s)	464, 1904
BmgT120I	GGNCC	5 cut(s)	349, 464, 538, 824, 1904
BmiI	GGNNCC	6 cut(s)	89, 191, 741, 1009, 1309, 1921
BmrFI	CCNGG	8 cut(s)	92, 218, 284, 1546, 1566, 1578, 1698, 1766
BmsI	GCATC	2 cut(s)	124, 643
BpiI	GAAGAC	1 cut(s)	795
BpmI	CTGGAG	6 cut(s)	165, 744, 1404, 1748, 1794, 1935
Bpu10I	CCTNAGC	2 cut(s)	434, 717
Bpu1102I	GCTNAGC	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	820
BpuMI	CCSGG	2 cut(s)	92, 284
Bsa29I	ATCGAT	1 cut(s)	418
BsaAI	YACGTR	2 cut(s)	530, 1240
BsaI	GGTCTC	1 cut(s)	720
BsaJI	CCNNGG	4 cut(s)	693, 812, 1131, 1218
BsaWI	WCCGGW	2 cut(s)	983, 1181
BsaXI	ACNNNNNCTCC	8 cut(s)	121, 151, 278, 308, 1408, 1438, 1694, 1724
Bsc4I	CCNNNNNNNGG	9 cut(s)	217, 223, 346, 458, 736, 1317, 1632, 1913, 1916
Bse1I	ACTGG	5 cut(s)	922, 1356, 1471, 1616, 1811
Bse3DI	GCAATG	2 cut(s)	445, 966
BseBI	CCWGG	6 cut(s)	218, 1546, 1566, 1578, 1698, 1766
BseCI	ATCGAT	1 cut(s)	418
BseDI	CCNNGG	4 cut(s)	693, 812, 1131, 1218
BseGI	GGATG	7 cut(s)	100, 919, 972, 1178, 1255, 1452, 1564
BseLI	CCNNNNNNNGG	9 cut(s)	217, 223, 346, 458, 736, 1317, 1632, 1913, 1916
BseMI	GCAATG	2 cut(s)	445, 966
BseMII	CTCAG	7 cut(s)	60, 269, 399, 448, 643, 731, 1020
BseNI	ACTGG	5 cut(s)	922, 1356, 1471, 1616, 1811
BseRI	GAGGAG	1 cut(s)	1932
BseSI	GKGCMC	1 cut(s)	2054
BseXI	GCAGC	6 cut(s)	457, 701, 1105, 1582, 1760, 2059
BsgI	GTGCAG	2 cut(s)	1428, 1759
Bsh1236I	CGCG	2 cut(s)	1439, 1493
Bsh1285I	CGRYCG	1 cut(s)	1690
BshFI	GGCC	9 cut(s)	350, 540, 825, 1177, 1367, 1573, 1656, 1826, 2027
BshNI	GGYRCC	1 cut(s)	189
BshVI	ATCGAT	1 cut(s)	418
BsiEI	CGRYCG	1 cut(s)	1690
BsiHKAI	GWGCWC	1 cut(s)	2054
BsiSI	CCGG	8 cut(s)	91, 117, 283, 467, 984, 1182, 1379, 1923
BslI	CCNNNNNNNGG	9 cut(s)	217, 223, 346, 458, 736, 1317, 1632, 1913, 1916
BsmAI	GTCTC	3 cut(s)	101, 720, 1714
BsmBI	CGTCTC	1 cut(s)	1714
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	9 cut(s)	350, 540, 825, 1177, 1367, 1573, 1656, 1826, 2027
Bso31I	GGTCTC	1 cut(s)	720
Bsp1286I	GDGCHC	1 cut(s)	2054
Bsp1720I	GCTNAGC	1 cut(s)	278
Bsp19I	CCATGG	1 cut(s)	693
BspACI	CCGC	6 cut(s)	196, 248, 547, 1049, 2062, 2075
BspANI	GGCC	9 cut(s)	350, 540, 825, 1177, 1367, 1573, 1656, 1826, 2027
BspCNI	CTCAG	7 cut(s)	61, 270, 400, 447, 642, 730, 1021
BspDI	ATCGAT	1 cut(s)	418
BspFNI	CGCG	2 cut(s)	1439, 1493
BspHI	TCATGA	4 cut(s)	748, 772, 879, 1539
BspLI	GGNNCC	6 cut(s)	89, 191, 741, 1009, 1309, 1921
BspMI	ACCTGC	1 cut(s)	298
BspPI	GGATC	8 cut(s)	152, 518, 622, 1556, 1688, 1960, 1972, 2026
BspT107I	GGYRCC	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	720
BsrBI	CCGCTC	2 cut(s)	549, 2062
BsrDI	GCAATG	2 cut(s)	445, 966
BsrI	ACTGG	5 cut(s)	922, 1356, 1471, 1616, 1811
BssECI	CCNNGG	4 cut(s)	693, 812, 1131, 1218
BssSI	CACGAG	1 cut(s)	1062
BssT1I	CCWWGG	4 cut(s)	693, 812, 1131, 1218
Bst2BI	CACGAG	1 cut(s)	1062
Bst2UI	CCWGG	6 cut(s)	218, 1546, 1566, 1578, 1698, 1766
Bst4CI	ACNGT	9 cut(s)	189, 458, 588, 934, 1088, 1688, 1966, 2032, 2056
Bst6I	CTCTTC	1 cut(s)	528
BstBAI	YACGTR	2 cut(s)	530, 1240
BstC8I	GCNNGC	3 cut(s)	681, 1437, 1571
BstDEI	CTNAG	8 cut(s)	69, 278, 408, 434, 629, 717, 1029, 1589
BstDSI	CCRYGG	1 cut(s)	693
BstEII	GGTNACC	2 cut(s)	620, 1850
BstENI	CCTNNNNNAGG	1 cut(s)	1914
BstF5I	GGATG	7 cut(s)	100, 919, 972, 1178, 1255, 1452, 1564
BstFNI	CGCG	2 cut(s)	1439, 1493
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	2 cut(s)	210, 1441
BstMAI	GTCTC	3 cut(s)	101, 720, 1714
BstMCI	CGRYCG	1 cut(s)	1690
BstMWI	GCNNNNNNNGC	6 cut(s)	546, 689, 1307, 1484, 1679, 1919
BstNI	CCWGG	6 cut(s)	218, 1546, 1566, 1578, 1698, 1766
BstNSI	RCATGY	5 cut(s)	19, 52, 450, 1756, 2085
BstPI	GGTNACC	2 cut(s)	620, 1850
BstSCI	CCNGG	8 cut(s)	90, 216, 282, 1544, 1564, 1576, 1696, 1764
BstSLI	GKGCMC	1 cut(s)	2054
BstUI	CGCG	2 cut(s)	1439, 1493
BstV1I	GCAGC	6 cut(s)	457, 701, 1105, 1582, 1760, 2059
BstV2I	GAAGAC	1 cut(s)	795
BstX2I	RGATCY	6 cut(s)	157, 614, 1387, 1952, 1977, 2018
BstXI	CCANNNNNNTGG	1 cut(s)	1363
BstYI	RGATCY	6 cut(s)	157, 614, 1387, 1952, 1977, 2018
Bsu15I	ATCGAT	1 cut(s)	418
BsuRI	GGCC	9 cut(s)	350, 540, 825, 1177, 1367, 1573, 1656, 1826, 2027
BsuTUI	ATCGAT	1 cut(s)	418
BtgI	CCRYGG	1 cut(s)	693
BtsCI	GGATG	7 cut(s)	100, 919, 972, 1178, 1255, 1452, 1564
BtsI	GCAGTG	1 cut(s)	1122
BtsIMutI	CAGTG	7 cut(s)	120, 648, 929, 1122, 1464, 2028, 2052
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	3 cut(s)	681, 1437, 1571
CaiI	CAGNNNCTG	1 cut(s)	1523
CciI	TCATGA	4 cut(s)	748, 772, 879, 1539
CfoI	GCGC	2 cut(s)	210, 1441
Cfr13I	GGNCC	5 cut(s)	349, 464, 538, 824, 1904
ClaI	ATCGAT	1 cut(s)	418
CseI	GACGC	1 cut(s)	1696
Csp6I	GTAC	2 cut(s)	190, 1084
CviQI	GTAC	2 cut(s)	190, 1084
DdeI	CTNAG	8 cut(s)	69, 278, 408, 434, 629, 717, 1029, 1589
DrdI	GACNNNNNNGTC	1 cut(s)	1507
DseDI	GACNNNNNNGTC	1 cut(s)	1507
EaeI	YGGCCR	3 cut(s)	1365, 1824, 2025
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco130I	CCWWGG	4 cut(s)	693, 812, 1131, 1218
Eco147I	AGGCCT	1 cut(s)	1573
Eco31I	GGTCTC	1 cut(s)	720
Eco32I	GATATC	1 cut(s)	1639
Eco47I	GGWCC	2 cut(s)	464, 1904
Eco57I	CTGAAG	1 cut(s)	870
Eco91I	GGTNACC	2 cut(s)	620, 1850
EcoNI	CCTNNNNNAGG	1 cut(s)	1914
EcoO109I	RGGNCCY	1 cut(s)	538
EcoO65I	GGTNACC	2 cut(s)	620, 1850
EcoRI	GAATTC	2 cut(s)	370, 1929
EcoRII	CCWGG	6 cut(s)	216, 1544, 1564, 1576, 1696, 1764
EcoRV	GATATC	1 cut(s)	1639
EcoT14I	CCWWGG	4 cut(s)	693, 812, 1131, 1218
ErhI	CCWWGG	4 cut(s)	693, 812, 1131, 1218
Esp3I	CGTCTC	1 cut(s)	1714
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FauI	CCCGC	1 cut(s)	554
FauNDI	CATATG	1 cut(s)	33
FbaI	TGATCA	1 cut(s)	2086
FblI	GTMKAC	2 cut(s)	53, 929
Fnu4HI	GCNGC	6 cut(s)	471, 690, 1094, 1596, 1774, 2073
FokI	GGATG	7 cut(s)	107, 926, 959, 1165, 1262, 1459, 1571
Fsp4HI	GCNGC	6 cut(s)	471, 690, 1094, 1596, 1774, 2073
FspBI	CTAG	8 cut(s)	155, 290, 813, 1283, 1404, 1658, 1740, 1982
GlaI	GCGC	2 cut(s)	209, 1440
GluI	GCNGC	6 cut(s)	471, 690, 1094, 1596, 1774, 2073
GsuI	CTGGAG	6 cut(s)	165, 744, 1404, 1748, 1794, 1935
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	9 cut(s)	350, 540, 825, 1177, 1367, 1573, 1656, 1826, 2027
HapII	CCGG	8 cut(s)	91, 117, 283, 467, 984, 1182, 1379, 1923
HgaI	GACGC	1 cut(s)	1696
HhaI	GCGC	2 cut(s)	210, 1441
Hin6I	GCGC	2 cut(s)	208, 1439
HinP1I	GCGC	2 cut(s)	208, 1439
HincII	GTYRAC	3 cut(s)	54, 892, 2035
HindII	GTYRAC	3 cut(s)	54, 892, 2035
HindIII	AAGCTT	2 cut(s)	398, 852
HinfI	GANTC	5 cut(s)	863, 883, 904, 1781, 1988
HpaI	GTTAAC	2 cut(s)	892, 2035
HpaII	CCGG	8 cut(s)	91, 117, 283, 467, 984, 1182, 1379, 1923
HphI	GGTGA	4 cut(s)	491, 632, 1038, 1862
Hpy188I	TCNGA	7 cut(s)	70, 632, 850, 1525, 1977, 2043, 2091
HpyAV	CCTTC	7 cut(s)	78, 340, 551, 635, 1167, 1406, 1615
HpyCH4III	ACNGT	9 cut(s)	189, 458, 588, 934, 1088, 1688, 1966, 2032, 2056
HpyCH4IV	ACGT	5 cut(s)	529, 806, 888, 1239, 1348
HpyF10VI	GCNNNNNNNGC	6 cut(s)	546, 689, 1307, 1484, 1679, 1919
HpyF3I	CTNAG	8 cut(s)	69, 278, 408, 434, 629, 717, 1029, 1589
HpySE526I	ACGT	5 cut(s)	529, 806, 888, 1239, 1348
HspAI	GCGC	2 cut(s)	208, 1439
KpnI	GGTACC	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	2086
KspAI	GTTAAC	2 cut(s)	892, 2035
LmnI	GCTCC	9 cut(s)	87, 142, 274, 286, 554, 1007, 1307, 1813, 1919
Lsp1109I	GCAGC	6 cut(s)	457, 701, 1105, 1582, 1760, 2059
LweI	GCATC	2 cut(s)	124, 643
MaeI	CTAG	8 cut(s)	155, 290, 813, 1283, 1404, 1658, 1740, 1982
MaeII	ACGT	5 cut(s)	529, 806, 888, 1239, 1348
MaeIII	GTNAC	5 cut(s)	620, 1211, 1700, 1850, 2077
MbiI	CCGCTC	2 cut(s)	549, 2062
MboII	GAAGA	4 cut(s)	226, 545, 710, 800
MflI	RGATCY	6 cut(s)	157, 614, 1387, 1952, 1977, 2018
MhlI	GDGCHC	1 cut(s)	2054
MlsI	TGGCCA	3 cut(s)	1367, 1826, 2027
MluCI	AATT	7 cut(s)	314, 370, 1138, 1155, 1199, 1735, 1929
MluI	ACGCGT	1 cut(s)	1491
MluNI	TGGCCA	3 cut(s)	1367, 1826, 2027
MmeI	TCCRAC	1 cut(s)	1082
Mox20I	TGGCCA	3 cut(s)	1367, 1826, 2027
MscI	TGGCCA	3 cut(s)	1367, 1826, 2027
MseI	TTAA	5 cut(s)	842, 891, 1190, 2034, 2046
MslI	CAYNNNNRTG	4 cut(s)	255, 710, 1101, 1492
Msp20I	TGGCCA	3 cut(s)	1367, 1826, 2027
MspA1I	CMGCKG	1 cut(s)	1028
MspI	CCGG	8 cut(s)	91, 117, 283, 467, 984, 1182, 1379, 1923
MspR9I	CCNGG	8 cut(s)	92, 218, 284, 1546, 1566, 1578, 1698, 1766
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	6 cut(s)	218, 1546, 1566, 1578, 1698, 1766
MvnI	CGCG	2 cut(s)	1439, 1493
MwoI	GCNNNNNNNGC	6 cut(s)	546, 689, 1307, 1484, 1679, 1919
NciI	CCSGG	2 cut(s)	92, 284
NcoI	CCATGG	1 cut(s)	693
NdeI	CATATG	1 cut(s)	33
NlaIV	GGNNCC	6 cut(s)	89, 191, 741, 1009, 1309, 1921
NmuCI	GTSAC	2 cut(s)	620, 1850
NspI	RCATGY	5 cut(s)	19, 52, 450, 1756, 2085
OliI	CACNNNNGTG	1 cut(s)	1492
PagI	TCATGA	4 cut(s)	748, 772, 879, 1539
PceI	AGGCCT	1 cut(s)	1573
PciI	ACATGT	2 cut(s)	48, 2081
PcsI	WCGNNNNNNNCGW	1 cut(s)	1490
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	5 cut(s)	863, 883, 904, 1781, 1988
PflFI	GACNNNGTC	1 cut(s)	1507
PflMI	CCANNNNNTGG	3 cut(s)	223, 1317, 1632
PfoI	TCCNGGA	2 cut(s)	216, 1764
PkrI	GCNGC	6 cut(s)	472, 691, 1095, 1597, 1775, 2074
Ppu21I	YACGTR	2 cut(s)	530, 1240
PscI	ACATGT	2 cut(s)	48, 2081
Psp6I	CCWGG	6 cut(s)	216, 1544, 1564, 1576, 1696, 1764
PspEI	GGTNACC	2 cut(s)	620, 1850
PspGI	CCWGG	6 cut(s)	216, 1544, 1564, 1576, 1696, 1764
PspN4I	GGNNCC	6 cut(s)	89, 191, 741, 1009, 1309, 1921
PspPI	GGNCC	5 cut(s)	349, 464, 538, 824, 1904
PsrI	GAACNNNNNNTAC	2 cut(s)	404, 436
PstNI	CAGNNNCTG	1 cut(s)	1523
PsuI	RGATCY	6 cut(s)	157, 614, 1387, 1952, 1977, 2018
PsyI	GACNNNGTC	1 cut(s)	1507
PvuII	CAGCTG	1 cut(s)	1028
RsaI	GTAC	2 cut(s)	191, 1085
RsaNI	GTAC	2 cut(s)	190, 1084
RseI	CAYNNNNRTG	4 cut(s)	255, 710, 1101, 1492
SalI	GTCGAC	1 cut(s)	52
SaqAI	TTAA	5 cut(s)	842, 891, 1190, 2034, 2046
SatI	GCNGC	6 cut(s)	471, 690, 1094, 1596, 1774, 2073
Sau96I	GGNCC	5 cut(s)	349, 464, 538, 824, 1904
ScrFI	CCNGG	8 cut(s)	92, 218, 284, 1546, 1566, 1578, 1698, 1766
SduI	GDGCHC	1 cut(s)	2054
SfaNI	GCATC	2 cut(s)	124, 643
SinI	GGWCC	2 cut(s)	464, 1904
SmiMI	CAYNNNNRTG	4 cut(s)	255, 710, 1101, 1492
SmlI	CTYRAG	1 cut(s)	799
SmoI	CTYRAG	1 cut(s)	799
SpeI	ACTAGT	2 cut(s)	1282, 1403
Sse9I	AATT	7 cut(s)	314, 370, 1138, 1155, 1199, 1735, 1929
SseBI	AGGCCT	1 cut(s)	1573
SsiI	CCGC	6 cut(s)	196, 248, 547, 1049, 2062, 2075
SspI	AATATT	1 cut(s)	1375
SspMI	CTAG	8 cut(s)	155, 290, 813, 1283, 1404, 1658, 1740, 1982
StuI	AGGCCT	1 cut(s)	1573
StyD4I	CCNGG	8 cut(s)	90, 216, 282, 1544, 1564, 1576, 1696, 1764
StyI	CCWWGG	4 cut(s)	693, 812, 1131, 1218
TaaI	ACNGT	9 cut(s)	189, 458, 588, 934, 1088, 1688, 1966, 2032, 2056
TaiI	ACGT	5 cut(s)	532, 809, 891, 1242, 1351
TaqI	TCGA	6 cut(s)	21, 53, 374, 418, 513, 1815
TasI	AATT	7 cut(s)	314, 370, 1138, 1155, 1199, 1735, 1929
TfiI	GAWTC	5 cut(s)	863, 883, 904, 1781, 1988
Tru1I	TTAA	5 cut(s)	842, 891, 1190, 2034, 2046
Tru9I	TTAA	5 cut(s)	842, 891, 1190, 2034, 2046
TscAI	CASTG	7 cut(s)	127, 648, 929, 1122, 1471, 2035, 2059
TseFI	GTSAC	2 cut(s)	620, 1850
TseI	GCWGC	6 cut(s)	470, 689, 1093, 1595, 1773, 2072
Tsp45I	GTSAC	2 cut(s)	620, 1850
TspDTI	ATGAA	8 cut(s)	165, 359, 372, 402, 801, 896, 1350, 1844
TspGWI	ACGGA	1 cut(s)	1020
TspRI	CASTG	7 cut(s)	127, 648, 929, 1122, 1471, 2035, 2059
Tth111I	GACNNNGTC	1 cut(s)	1507
Van91I	CCANNNNNTGG	3 cut(s)	223, 1317, 1632
VneI	GTGCAC	1 cut(s)	2050
VpaK11BI	GGWCC	2 cut(s)	464, 1904
XagI	CCTNNNNNAGG	1 cut(s)	1914
XapI	RAATTY	4 cut(s)	314, 370, 1735, 1929
XceI	RCATGY	5 cut(s)	19, 52, 450, 1756, 2085
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1552
XmaJI	CCTAGG	1 cut(s)	812
XmiI	GTMKAC	2 cut(s)	53, 929
XspI	CTAG	8 cut(s)	155, 290, 813, 1283, 1404, 1658, 1740, 1982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.