Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008017

Physical Location & Seq

Genomic Coordinates Reverse (-)

3764241 .. 3766671

Gene Structure 2431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G06634.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGATCATCAAAATTATCAATACCAAAATCCTTTCGAGAGACGACCCATCCTTAAATCCAAAGCTCCTGCTGTGAAGTGGATCAAAGAATGGGTACCACAAGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATGGGTCACAGAGGATACTTTTAGCAGACTTAAAGAAAAAGAGAAAGAGCCTGATGTTCCTGAGCCTGAACCTGAACCAACTACAGAGATTTTGTTTCTCTGTAGTTATGATGGTTGCGGGAAGACTTTCTTTGATGTTAGTGCATTGAGGAAACATTCTCATATCCATGGAGAAAGACAATATGTTTGTGATCAGGAAGGATGTGGAAAGAAATTTCTGGATAGTTCAAAGTTGAAGAGACATTATCTTATTCATACTGGAGAGAGAAATTATATATGTACTTATGAAGGATGTGGAAAGGCATTCTCGTTGGATTTTAACCTTAGGTCTCACATGAAGACTCATTCACAAGAGAATTATCATATATGTCCTTACAGTGGGTGTGTGAAGAGATATGCTCATGAATACAAGCTAAAGAACCACGTTGCTGCCTACCATGAAAAGAATGGTGGTGGAGAGACTCCCAAATATACACCACCAGCAGAGAAAGTATTAAGGACTGTCAAAACACCTGCAACAGTTTGTGGCCCGTCTTCGGATCGGCCATACGCATGCCCTTACGAAGGGTGTGAGAAAGCTTACATACATGAGTACAAGCTTAAGCTCCACTTGAAGAGAGAACATCCAGGGCATTTACAAGAAGAGAACGCGGATACCCCCACACTGAACAAGCACAATGGCAATGACAGGAATGAGATAGATGACGGGAGTGACCAAGATGTTTACAGGAAACACGCTAGTAATGGGAAAGGCCAGACACATAAACAACAGAGCAGAGCTAAGCCAAACATGAGGACACCACCAGCCAAAGTTGGAAAGAAAGGTTCTACCTCTTCGCCTGCCAAAGCAAGGATTGCAAAAAAACCATGGCAAGCAAAAGAAACTTTTGAAGAAGTAGAAAGAGAAGAAGAAGAAGATAGCGAGGAGACAGAGGAAGATAGAGATAATGTGGAGGATGGCTGGAGGTTTGGCGAAAACAACGAGGATGATGACGACGATGAAGAGACCGAGTATGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0032101 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:1900150 GO:1901000 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

387

Amino Acids

44.7

Weight (kDa)

6.05

Isoelectric Point (pI)

55.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06634 AT4G06634 AT4G06634
fragaria_vesca	FvH4_5g28700 FvH4_5g28700 FvH4_5g28700 FvH4_5g28700
malus_domestica	MD08G1239600.v1.1
prunus_persica	Prupe.1G576100_v2.0.a1 Prupe.1G576100_v2.0.a1
pyrus_communis	pycom08g20780
rosa_chinensis	RchiOBHm_Chr7g0220861
rosa_laevigata	RLG00000002197
rosa_multiflora	Rmu_ssc0000286.1_g000009
rosa_roxburghii	Rroxscaffold_3G00238940
rosa_rugosa	Rorug07G0197500 Rorug07G0197600 Rorug07G0197700 Rorug07G0197800 Rorug07G0197900.1
rosa_samantha	Rh7AG338100 Rh7BG328800 Rh7CG356200 Rh7DG337000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	661
Acc36I	ACCTGC	1 cut(s)	661
Acc65I	GGTACC	1 cut(s)	94
AccB1I	GGYRCC	1 cut(s)	94
AccII	CGCG	1 cut(s)	791
AciI	CCGC	2 cut(s)	258, 791
AclWI	GGATC	3 cut(s)	12, 89, 687
AcoI	YGGCCR	1 cut(s)	683
AcsI	RAATTY	1 cut(s)	353
AfaI	GTAC	3 cut(s)	96, 421, 734
AfiI	CCNNNNNNNGG	4 cut(s)	518, 676, 704, 990
AflII	CTTAAG	1 cut(s)	740
AgsI	TTSAA	4 cut(s)	369, 376, 754, 1031
AjnI	CCWGG	1 cut(s)	766
AluBI	AGCT	6 cut(s)	65, 553, 719, 739, 745, 920
AluI	AGCT	6 cut(s)	65, 553, 719, 739, 745, 920
Alw26I	GTCTC	6 cut(s)	34, 373, 474, 593, 1061, 1139
AlwI	GGATC	3 cut(s)	12, 89, 687
AoxI	GGCC	3 cut(s)	667, 683, 892
ApeKI	GCWGC	1 cut(s)	569
ApoI	RAATTY	1 cut(s)	353
ArsI	GACNNNNNNTTYG	2 cut(s)	309, 341
Asp700I	GAANNNNTTC	1 cut(s)	266
Asp718I	GGTACC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	668
AxyI	CCTNAGG	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	94
BbsI	GAAGAC	3 cut(s)	269, 485, 666
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	3 cut(s)	56, 245, 1091
BciT130I	CCWGG	1 cut(s)	768
BciVI	GTATCC	2 cut(s)	148, 787
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	6 cut(s)	34, 373, 474, 593, 1061, 1139
BfaI	CTAG	1 cut(s)	879
BfmI	CTRYAG	3 cut(s)	114, 222, 241
BfrI	CTTAAG	1 cut(s)	740
BfuAI	ACCTGC	1 cut(s)	661
BfuI	GTATCC	2 cut(s)	148, 787
BisI	GCNGC	1 cut(s)	570
BlpI	GCTNAGC	1 cut(s)	921
BlsI	GCNGC	1 cut(s)	571
Bme1390I	CCNGG	1 cut(s)	768
BmgT120I	GGNCC	1 cut(s)	668
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	768
BpiI	GAAGAC	3 cut(s)	269, 485, 666
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
BpmI	CTGGAG	2 cut(s)	420, 1123
Bpu10I	CCTNAGC	1 cut(s)	201
Bpu1102I	GCTNAGC	1 cut(s)	921
BsaI	GGTCTC	2 cut(s)	474, 1139
BsaJI	CCNNGG	3 cut(s)	307, 767, 1007
Bsc4I	CCNNNNNNNGG	4 cut(s)	518, 676, 704, 990
Bse1I	ACTGG	1 cut(s)	403
Bse21I	CCTNAGG	1 cut(s)	464
Bse3DI	GCAATG	1 cut(s)	829
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	3 cut(s)	307, 767, 1007
BseGI	GGATG	6 cut(s)	48, 347, 437, 763, 1102, 1132
BseLI	CCNNNNNNNGG	4 cut(s)	518, 676, 704, 990
BseMI	GCAATG	1 cut(s)	829
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	1079
BseXI	GCAGC	1 cut(s)	556
Bsh1236I	CGCG	1 cut(s)	791
BshFI	GGCC	3 cut(s)	669, 685, 894
BshNI	GGYRCC	1 cut(s)	94
BslI	CCNNNNNNNGG	4 cut(s)	518, 676, 704, 990
BsmAI	GTCTC	6 cut(s)	34, 373, 474, 593, 1061, 1139
BsmBI	CGTCTC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	443
BsnI	GGCC	3 cut(s)	669, 685, 894
Bso31I	GGTCTC	2 cut(s)	474, 1139
Bsp143I	GATC	4 cut(s)	4, 81, 331, 679
Bsp1720I	GCTNAGC	1 cut(s)	921
Bsp19I	CCATGG	2 cut(s)	307, 1007
BspACI	CCGC	2 cut(s)	258, 791
BspANI	GGCC	3 cut(s)	669, 685, 894
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	791
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	1 cut(s)	96
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	3 cut(s)	12, 89, 687
BspT107I	GGYRCC	1 cut(s)	94
BspTI	CTTAAG	1 cut(s)	740
BspTNI	GGTCTC	2 cut(s)	474, 1139
BsrDI	GCAATG	1 cut(s)	829
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	3 cut(s)	307, 767, 1007
BssMI	GATC	4 cut(s)	4, 81, 331, 679
BssT1I	CCWWGG	2 cut(s)	307, 1007
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	3 cut(s)	518, 643, 661
Bst6I	CTCTTC	6 cut(s)	371, 524, 749, 777, 979, 1137
BstAFI	CTTAAG	1 cut(s)	740
BstAPI	GCANNNNNTGC	1 cut(s)	995
BstC8I	GCNNGC	3 cut(s)	694, 981, 1014
BstDEI	CTNAG	3 cut(s)	201, 464, 921
BstDSI	CCRYGG	2 cut(s)	307, 1007
BstENI	CCTNNNNNAGG	1 cut(s)	702
BstF5I	GGATG	6 cut(s)	48, 347, 437, 763, 1102, 1132
BstFNI	CGCG	1 cut(s)	791
BstKTI	GATC	4 cut(s)	7, 84, 334, 682
BstMAI	GTCTC	6 cut(s)	34, 373, 474, 593, 1061, 1139
BstMBI	GATC	4 cut(s)	4, 81, 331, 679
BstMWI	GCNNNNNNNGC	1 cut(s)	995
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	1 cut(s)	696
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	3 cut(s)	114, 222, 241
BstUI	CGCG	1 cut(s)	791
BstV1I	GCAGC	1 cut(s)	556
BstV2I	GAAGAC	3 cut(s)	269, 485, 666
Bsu36I	CCTNAGG	1 cut(s)	464
BsuI	GTATCC	2 cut(s)	148, 787
BsuRI	GGCC	3 cut(s)	669, 685, 894
BtgI	CCRYGG	2 cut(s)	307, 1007
BtsCI	GGATG	6 cut(s)	48, 347, 437, 763, 1102, 1132
BtsIMutI	CAGTG	2 cut(s)	523, 803
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	3 cut(s)	694, 981, 1014
CciI	TCATGA	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	668
Csp6I	GTAC	3 cut(s)	95, 420, 733
CviAII	CATG	8 cut(s)	308, 475, 542, 578, 693, 728, 931, 1008
CviQI	GTAC	3 cut(s)	95, 420, 733
DdeI	CTNAG	3 cut(s)	201, 464, 921
DpnI	GATC	4 cut(s)	6, 83, 333, 681
DpnII	GATC	4 cut(s)	4, 81, 331, 679
EaeI	YGGCCR	1 cut(s)	683
Eam1104I	CTCTTC	6 cut(s)	371, 524, 749, 777, 979, 1137
EarI	CTCTTC	6 cut(s)	371, 524, 749, 777, 979, 1137
Eco130I	CCWWGG	2 cut(s)	307, 1007
Eco31I	GGTCTC	2 cut(s)	474, 1139
Eco81I	CCTNAGG	1 cut(s)	464
EcoNI	CCTNNNNNAGG	1 cut(s)	702
EcoRII	CCWGG	1 cut(s)	766
EcoT14I	CCWWGG	2 cut(s)	307, 1007
ErhI	CCWWGG	2 cut(s)	307, 1007
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	8 cut(s)	311, 478, 545, 581, 696, 731, 934, 1011
FalI	AAGNNNNNCTT	4 cut(s)	254, 286, 734, 766
FatI	CATG	8 cut(s)	307, 474, 541, 577, 692, 727, 930, 1007
FauI	CCCGC	1 cut(s)	251
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	570
FokI	GGATG	6 cut(s)	35, 354, 444, 750, 1109, 1139
Fsp4HI	GCNGC	1 cut(s)	570
FspBI	CTAG	1 cut(s)	879
GluI	GCNGC	1 cut(s)	570
GsuI	CTGGAG	2 cut(s)	420, 1123
HaeIII	GGCC	3 cut(s)	669, 685, 894
Hin1II	CATG	8 cut(s)	311, 478, 545, 581, 696, 731, 934, 1011
HindIII	AAGCTT	2 cut(s)	717, 737
HinfI	GANTC	2 cut(s)	481, 601
Hpy166II	GTNNAC	1 cut(s)	865
Hpy188I	TCNGA	1 cut(s)	679
Hpy188III	TCNNGA	5 cut(s)	37, 200, 335, 359, 542
Hpy8I	GTNNAC	1 cut(s)	865
Hpy99I	CGWCG	1 cut(s)	1139
HpyAV	CCTTC	3 cut(s)	332, 422, 698
HpyCH4III	ACNGT	3 cut(s)	518, 643, 661
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	3 cut(s)	284, 656, 998
HpyF10VI	GCNNNNNNNGC	1 cut(s)	995
HpyF3I	CTNAG	3 cut(s)	201, 464, 921
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	8 cut(s)	311, 478, 545, 581, 696, 731, 934, 1011
KpnI	GGTACC	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	4 cut(s)	4, 81, 331, 679
LmnI	GCTCC	2 cut(s)	70, 750
Lsp1109I	GCAGC	1 cut(s)	556
MaeI	CTAG	1 cut(s)	879
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	2 cut(s)	145, 851
MalI	GATC	4 cut(s)	6, 83, 333, 681
MboI	GATC	4 cut(s)	4, 81, 331, 679
MluCI	AATT	4 cut(s)	13, 353, 409, 496
MlyI	GAGTC	2 cut(s)	475, 595
MmeI	TCCRAC	2 cut(s)	432, 934
MnlI	CCTC	9 cut(s)	145, 282, 927, 982, 1057, 1066, 1087, 1098, 1117
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	5 cut(s)	54, 171, 459, 635, 741
MslI	CAYNNNNRTG	2 cut(s)	306, 691
MspCI	CTTAAG	1 cut(s)	740
MspR9I	CCNGG	1 cut(s)	768
Mva1269I	GAATGC	1 cut(s)	443
MvaI	CCWGG	1 cut(s)	768
MvnI	CGCG	1 cut(s)	791
MwoI	GCNNNNNNNGC	1 cut(s)	995
NcoI	CCATGG	2 cut(s)	307, 1007
NdeII	GATC	4 cut(s)	4, 81, 331, 679
NlaIII	CATG	8 cut(s)	311, 478, 545, 581, 696, 731, 934, 1011
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	2 cut(s)	145, 851
NspI	RCATGY	1 cut(s)	696
PaeI	GCATGC	1 cut(s)	696
PagI	TCATGA	1 cut(s)	541
PaqCI	CACCTGC	1 cut(s)	661
PctI	GAATGC	1 cut(s)	443
PdmI	GAANNNNTTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	571
PleI	GAGTC	2 cut(s)	475, 595
PpsI	GAGTC	2 cut(s)	475, 595
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	668
RsaI	GTAC	3 cut(s)	96, 421, 734
RsaNI	GTAC	3 cut(s)	95, 420, 733
RseI	CAYNNNNRTG	2 cut(s)	306, 691
SaqAI	TTAA	5 cut(s)	54, 171, 459, 635, 741
SatI	GCNGC	1 cut(s)	570
Sau3AI	GATC	4 cut(s)	4, 81, 331, 679
Sau96I	GGNCC	1 cut(s)	668
SchI	GAGTC	2 cut(s)	475, 595
ScrFI	CCNGG	1 cut(s)	768
SfcI	CTRYAG	3 cut(s)	114, 222, 241
SmiMI	CAYNNNNRTG	2 cut(s)	306, 691
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
SphI	GCATGC	1 cut(s)	696
Sse9I	AATT	4 cut(s)	13, 353, 409, 496
SsiI	CCGC	2 cut(s)	258, 791
SspMI	CTAG	1 cut(s)	879
StyD4I	CCNGG	1 cut(s)	766
StyI	CCWWGG	2 cut(s)	307, 1007
TaaI	ACNGT	3 cut(s)	518, 643, 661
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	1 cut(s)	36
TaqII	GACCGA	1 cut(s)	1163
TasI	AATT	4 cut(s)	13, 353, 409, 496
TatI	WGTACW	2 cut(s)	419, 732
Tru1I	TTAA	5 cut(s)	54, 171, 459, 635, 741
Tru9I	TTAA	5 cut(s)	54, 171, 459, 635, 741
TscAI	CASTG	2 cut(s)	523, 810
TseFI	GTSAC	2 cut(s)	145, 851
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	2 cut(s)	145, 851
TspDTI	ATGAA	6 cut(s)	383, 441, 491, 558, 594, 1155
TspRI	CASTG	2 cut(s)	523, 810
Vha464I	CTTAAG	1 cut(s)	740
XagI	CCTNNNNNAGG	1 cut(s)	702
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	1 cut(s)	696
XcmI	CCANNNNNNNNNTGG	1 cut(s)	584
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	1 cut(s)	879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.