Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008017

Physical Location & Seq

Genomic Coordinates Reverse (-)

46920252 .. 46926322

Gene Structure 6071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G576100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAGACCCAATTCCATCACAATTATTTCGAGAGGCGCCCCATCTTCCGATCCAAGACTCCCGCTGTTAAATGGTTTAAAGAATGGGTTCCCCAAGATGTTGTAGCAACTGGTGGGAAGTGCTCTCTATTGAAATGGGTCACAGCGGATACAATAAAGGCTTTGAAAGAGAAATCAAAAGAAACTGTGGCACCGGAGCCAGAGCCAGAACCAACAACCGAAGTGCTTTTTCTTTGCAGCTATGAAGGCTGTGGGAAGACCTTTATTGATGCTGGTGCTTTGAGGAAGCATTCACACATCCATGGGGAAAGACAATATGTTTGCCACTATGAGGGTTGTGGAAAGAAATTTTTGGATAGTTCAAAGTTGAAAAGACACTTTCTTATTCATACTGGGGAGAGAGATTATCGGTGTAACTTTGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACCTTAGGTCTCACATGAAAACACATTCGCAAGAGAACTATCATATTTGTCCATACCCAGACTGTGGAAAGAGATATGCTCATGAATACAAGCTTAAAAACCACATTTCGTCTCACCATGAGAAGAGTGTGATGGTGGACGTGCCAAAATATGCTACCCCACCTGCAGAGAAGCAAATCAAAACTCCCAAGCCTCCCGCAGGGGGTTATGGCTCTGCATCATCTGATCGCCCTTATGCTTGTCCTTATGAAGGGTGTGAAAAGGCCTACATCCATGAATACAAGCTTAAACTACATCTCAGGAGAGAGCATCCTGGCCATATGTCCGATGAGAATGCGGAGAATGCGCCTAATAATGCTGACAATGAGATGGATGAAGCCAGTGATCAAGATGCCTATGCTGGAAAACGTGTGAATGGCAAAAGCCAGAAACAAAACAGGCCCAAACCAAACTTAAAGTTCCCGCCTGCAAAAGTTGTTCAGCGTAAAGGCGCAACTCCATCTCCTGCCACGATGAACACAATGAAAAAGCCCTGGCCCGTCAAAGATGAAGTAGTTTACGAGGAAGAAGATAGTGAAGAGACTGAGGAGGACCGCGACAATGTTGAGGATGGTTGGAGGTACGGTGAAAACAATGACGATGATGATGAAGAAACAGAGGATGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0032101 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:1900150 GO:1901000 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

375

Amino Acids

42.97

Weight (kDa)

6.11

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06634 AT4G06634 AT4G06634
fragaria_vesca	FvH4_5g28700 FvH4_5g28700 FvH4_5g28700 FvH4_5g28700
malus_domestica	MD08G1239600.v1.1
prunus_persica	Prupe.1G576100_v2.0.a1 Prupe.1G576100_v2.0.a1
pyrus_communis	pycom08g20780
rosa_chinensis	RchiOBHm_Chr7g0220861
rosa_laevigata	RLG00000002197
rosa_multiflora	Rmu_ssc0000286.1_g000009
rosa_roxburghii	Rroxscaffold_3G00238940
rosa_rugosa	Rorug07G0197500 Rorug07G0197600 Rorug07G0197700 Rorug07G0197800 Rorug07G0197900.1
rosa_samantha	Rh7AG338100 Rh7BG328800 Rh7CG356200 Rh7DG337000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	625
Acc36I	ACCTGC	1 cut(s)	625
AccB1I	GGYRCC	2 cut(s)	36, 190
AccB7I	CCANNNNNTGG	1 cut(s)	518
AccII	CGCG	1 cut(s)	1050
AciI	CCGC	6 cut(s)	63, 146, 651, 791, 917, 1048
AclWI	GGATC	1 cut(s)	45
AcoI	YGGCCR	1 cut(s)	769
AcsI	RAATTY	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	37
AfaI	GTAC	1 cut(s)	1076
AfiI	CCNNNNNNNGG	5 cut(s)	331, 518, 653, 656, 704
AflIII	ACRYGT	1 cut(s)	862
AgsI	TTSAA	6 cut(s)	133, 166, 363, 370, 422, 454
AjiI	CACGTC	1 cut(s)	595
AjnI	CCWGG	3 cut(s)	444, 766, 986
AluBI	AGCT	3 cut(s)	240, 547, 739
AluI	AGCT	3 cut(s)	240, 547, 739
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	3 cut(s)	468, 570, 1028
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	5 cut(s)	435, 717, 769, 893, 989
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	347
ArsI	GACNNNNNNTTYG	2 cut(s)	303, 335
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	3 cut(s)	39, 802, 947
AspS9I	GGNCC	3 cut(s)	894, 990, 1045
AsuHPI	GGTGA	2 cut(s)	560, 1091
AvaII	GGWCC	1 cut(s)	1045
AxyI	CCTNAGG	1 cut(s)	458
BalI	TGGCCA	1 cut(s)	771
BanI	GGYRCC	2 cut(s)	36, 190
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	6 cut(s)	24, 50, 580, 817, 961, 1058
BcgI	CGANNNNNNTGC	2 cut(s)	770, 804
BciT130I	CCWGG	3 cut(s)	446, 768, 988
BciVI	GTATCC	1 cut(s)	142
BclI	TGATCA	1 cut(s)	838
BcoDI	GTCTC	3 cut(s)	468, 570, 1028
BfaI	CTAG	1 cut(s)	1123
BfmI	CTRYAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	40
BfuAI	ACCTGC	1 cut(s)	625
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	1 cut(s)	238
BlsI	GCNGC	1 cut(s)	239
Bme1390I	CCNGG	3 cut(s)	446, 768, 988
Bme18I	GGWCC	1 cut(s)	1045
BmgBI	CACGTC	1 cut(s)	595
BmgT120I	GGNCC	3 cut(s)	894, 990, 1045
BmiI	GGNNCC	4 cut(s)	38, 90, 192, 198
BmrFI	CCNGG	3 cut(s)	446, 768, 988
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	4 cut(s)	259, 680, 772, 835
BmuI	ACTGGG	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	263
BplI	GAGNNNNNCTC	2 cut(s)	517, 549
BsaHI	GRCGYC	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	468
BsaJI	CCNNGG	3 cut(s)	301, 444, 986
BsaWI	WCCGGW	1 cut(s)	193
BsaXI	ACNNNNNCTCC	4 cut(s)	940, 970, 1063, 1093
Bsc4I	CCNNNNNNNGG	5 cut(s)	331, 518, 653, 656, 704
Bse1I	ACTGG	3 cut(s)	115, 397, 834
Bse21I	CCTNAGG	1 cut(s)	458
BseBI	CCWGG	3 cut(s)	446, 768, 988
BseDI	CCNNGG	3 cut(s)	301, 444, 986
BseGI	GGATG	6 cut(s)	297, 723, 763, 832, 1069, 1120
BseLI	CCNNNNNNNGG	5 cut(s)	331, 518, 653, 656, 704
BseMII	CTCAG	2 cut(s)	766, 1029
BseNI	ACTGG	3 cut(s)	115, 397, 834
BseRI	GAGGAG	1 cut(s)	1055
BseXI	GCAGC	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	1050
BshFI	GGCC	5 cut(s)	437, 719, 771, 895, 991
BshNI	GGYRCC	2 cut(s)	36, 190
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	194
BslI	CCNNNNNNNGG	5 cut(s)	331, 518, 653, 656, 704
BsmAI	GTCTC	3 cut(s)	468, 570, 1028
BsmBI	CGTCTC	1 cut(s)	570
BsmI	GAATGC	3 cut(s)	289, 793, 802
BsnI	GGCC	5 cut(s)	437, 719, 771, 895, 991
Bso31I	GGTCTC	1 cut(s)	468
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	50, 679, 838
Bsp19I	CCATGG	1 cut(s)	301
BspACI	CCGC	6 cut(s)	63, 146, 651, 791, 917, 1048
BspANI	GGCC	5 cut(s)	437, 719, 771, 895, 991
BspCNI	CTCAG	2 cut(s)	765, 1030
BspFNI	CGCG	1 cut(s)	1050
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	4 cut(s)	38, 90, 192, 198
BspMAI	CTGCAG	1 cut(s)	622
BspMI	ACCTGC	1 cut(s)	625
BspPI	GGATC	1 cut(s)	45
BspT107I	GGYRCC	2 cut(s)	36, 190
BspTNI	GGTCTC	1 cut(s)	468
BsrI	ACTGG	3 cut(s)	115, 397, 834
BssECI	CCNNGG	3 cut(s)	301, 444, 986
BssMI	GATC	3 cut(s)	50, 679, 838
BssNI	GRCGYC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	3 cut(s)	446, 768, 988
Bst4CI	ACNGT	3 cut(s)	187, 518, 1079
Bst6I	CTCTTC	2 cut(s)	572, 1026
BstACI	GRCGYC	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	921
BstDEI	CTNAG	3 cut(s)	458, 752, 1038
BstDSI	CCRYGG	1 cut(s)	301
BstENI	CCTNNNNNAGG	2 cut(s)	651, 702
BstF5I	GGATG	6 cut(s)	297, 723, 763, 832, 1069, 1120
BstFNI	CGCG	1 cut(s)	1050
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	3 cut(s)	39, 802, 947
BstKTI	GATC	3 cut(s)	53, 682, 841
BstMAI	GTCTC	3 cut(s)	468, 570, 1028
BstMBI	GATC	3 cut(s)	50, 679, 838
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 797
BstNI	CCWGG	3 cut(s)	446, 768, 988
BstSCI	CCNGG	3 cut(s)	444, 766, 986
BstSFI	CTRYAG	1 cut(s)	618
BstUI	CGCG	1 cut(s)	1050
BstV1I	GCAGC	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	263
Bsu36I	CCTNAGG	1 cut(s)	458
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	5 cut(s)	437, 719, 771, 895, 991
BtgI	CCRYGG	1 cut(s)	301
BtrI	CACGTC	1 cut(s)	595
BtsCI	GGATG	6 cut(s)	297, 723, 763, 832, 1069, 1120
BtsIMutI	CAGTG	1 cut(s)	841
BveI	ACCTGC	1 cut(s)	625
Cac8I	GCNNGC	1 cut(s)	921
CciI	TCATGA	1 cut(s)	535
CfoI	GCGC	3 cut(s)	39, 802, 947
Cfr13I	GGNCC	3 cut(s)	894, 990, 1045
Csp6I	GTAC	1 cut(s)	1075
CviAII	CATG	5 cut(s)	302, 469, 536, 572, 728
CviQI	GTAC	1 cut(s)	1075
DdeI	CTNAG	3 cut(s)	458, 752, 1038
DinI	GGCGCC	1 cut(s)	38
DpnI	GATC	3 cut(s)	52, 681, 840
DpnII	GATC	3 cut(s)	50, 679, 838
DraI	TTTAAA	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	769
Eam1104I	CTCTTC	2 cut(s)	572, 1026
EarI	CTCTTC	2 cut(s)	572, 1026
Eco130I	CCWWGG	1 cut(s)	301
Eco147I	AGGCCT	2 cut(s)	437, 719
Eco31I	GGTCTC	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	1045
Eco81I	CCTNAGG	1 cut(s)	458
EcoNI	CCTNNNNNAGG	2 cut(s)	651, 702
EcoRII	CCWGG	3 cut(s)	444, 766, 986
EcoT14I	CCWWGG	1 cut(s)	301
EgeI	GGCGCC	1 cut(s)	38
EheI	GGCGCC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	301
Esp3I	CGTCTC	1 cut(s)	570
FaeI	CATG	5 cut(s)	305, 472, 539, 575, 731
FatI	CATG	5 cut(s)	301, 468, 535, 571, 727
FauI	CCCGC	3 cut(s)	70, 658, 924
FauNDI	CATATG	1 cut(s)	774
FbaI	TGATCA	1 cut(s)	838
Fnu4HI	GCNGC	1 cut(s)	238
FokI	GGATG	5 cut(s)	284, 710, 750, 839, 1076
Fsp4HI	GCNGC	1 cut(s)	238
FspBI	CTAG	1 cut(s)	1123
GlaI	GCGC	3 cut(s)	38, 801, 946
GluI	GCNGC	1 cut(s)	238
HaeII	RGCGCY	1 cut(s)	40
HaeIII	GGCC	5 cut(s)	437, 719, 771, 895, 991
HapII	CCGG	1 cut(s)	194
HhaI	GCGC	3 cut(s)	39, 802, 947
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	5 cut(s)	305, 472, 539, 575, 731
Hin6I	GCGC	3 cut(s)	37, 800, 945
HinP1I	GCGC	3 cut(s)	37, 800, 945
HindIII	AAGCTT	2 cut(s)	545, 737
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	2 cut(s)	560, 1091
Hpy166II	GTNNAC	2 cut(s)	592, 1012
Hpy188I	TCNGA	3 cut(s)	50, 679, 781
Hpy188III	TCNNGA	4 cut(s)	31, 536, 754, 842
Hpy8I	GTNNAC	2 cut(s)	592, 1012
HpyAV	CCTTC	4 cut(s)	239, 416, 448, 698
HpyCH4III	ACNGT	3 cut(s)	187, 518, 1079
HpyCH4IV	ACGT	2 cut(s)	594, 862
HpyCH4V	TGCA	4 cut(s)	237, 620, 671, 923
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 797
HpyF3I	CTNAG	3 cut(s)	458, 752, 1038
HpySE526I	ACGT	2 cut(s)	594, 862
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	5 cut(s)	305, 472, 539, 575, 731
HspAI	GCGC	3 cut(s)	37, 800, 945
KasI	GGCGCC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	838
Kzo9I	GATC	3 cut(s)	50, 679, 838
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	4 cut(s)	259, 680, 772, 835
MaeI	CTAG	1 cut(s)	1123
MaeII	ACGT	2 cut(s)	594, 862
MaeIII	GTNAC	2 cut(s)	139, 413
MalI	GATC	3 cut(s)	52, 681, 840
MboI	GATC	3 cut(s)	50, 679, 838
MboII	GAAGA	7 cut(s)	37, 268, 589, 1031, 1034, 1043, 1115
MhlI	GDGCHC	1 cut(s)	125
MlsI	TGGCCA	1 cut(s)	771
MluCI	AATT	3 cut(s)	11, 22, 347
MluNI	TGGCCA	1 cut(s)	771
Mly113I	GGCGCC	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	1049
Mox20I	TGGCCA	1 cut(s)	771
MroXI	GAANNNNTTC	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	771
MseI	TTAA	5 cut(s)	69, 78, 549, 741, 908
MslI	CAYNNNNRTG	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	771
MspA1I	CMGCKG	2 cut(s)	65, 146
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	3 cut(s)	446, 768, 988
Mva1269I	GAATGC	3 cut(s)	289, 793, 802
MvaI	CCWGG	3 cut(s)	446, 768, 988
MvnI	CGCG	1 cut(s)	1050
MwoI	GCNNNNNNNGC	2 cut(s)	246, 797
NarI	GGCGCC	1 cut(s)	37
NcoI	CCATGG	1 cut(s)	301
NdeI	CATATG	1 cut(s)	774
NdeII	GATC	3 cut(s)	50, 679, 838
NlaIII	CATG	5 cut(s)	305, 472, 539, 575, 731
NlaIV	GGNNCC	4 cut(s)	38, 90, 192, 198
NmuCI	GTSAC	1 cut(s)	139
PagI	TCATGA	1 cut(s)	535
PaqCI	CACCTGC	1 cut(s)	625
PceI	AGGCCT	2 cut(s)	437, 719
PctI	GAATGC	3 cut(s)	289, 793, 802
PdmI	GAANNNNTTC	1 cut(s)	87
PflMI	CCANNNNNTGG	1 cut(s)	518
PkrI	GCNGC	1 cut(s)	239
PleI	GAGTC	1 cut(s)	52
PluTI	GGCGCC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	52
Psp6I	CCWGG	3 cut(s)	444, 766, 986
PspGI	CCWGG	3 cut(s)	444, 766, 986
PspN4I	GGNNCC	4 cut(s)	38, 90, 192, 198
PspPI	GGNCC	3 cut(s)	894, 990, 1045
PstI	CTGCAG	1 cut(s)	622
RsaI	GTAC	1 cut(s)	1076
RsaNI	GTAC	1 cut(s)	1075
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	5 cut(s)	69, 78, 549, 741, 908
SatI	GCNGC	1 cut(s)	238
Sau3AI	GATC	3 cut(s)	50, 679, 838
Sau96I	GGNCC	3 cut(s)	894, 990, 1045
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	3 cut(s)	446, 768, 988
SduI	GDGCHC	1 cut(s)	125
SfaNI	GCATC	4 cut(s)	259, 680, 772, 835
SfcI	CTRYAG	1 cut(s)	618
SfoI	GGCGCC	1 cut(s)	38
SinI	GGWCC	1 cut(s)	1045
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	3 cut(s)	11, 22, 347
SseBI	AGGCCT	2 cut(s)	437, 719
SsiI	CCGC	6 cut(s)	63, 146, 651, 791, 917, 1048
SspDI	GGCGCC	1 cut(s)	36
SspMI	CTAG	1 cut(s)	1123
StuI	AGGCCT	2 cut(s)	437, 719
StyD4I	CCNGG	3 cut(s)	444, 766, 986
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	3 cut(s)	187, 518, 1079
TaiI	ACGT	2 cut(s)	597, 865
TaqI	TCGA	1 cut(s)	30
TasI	AATT	3 cut(s)	11, 22, 347
Tru1I	TTAA	5 cut(s)	69, 78, 549, 741, 908
Tru9I	TTAA	5 cut(s)	69, 78, 549, 741, 908
TscAI	CASTG	1 cut(s)	841
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	237
Tsp45I	GTSAC	1 cut(s)	139
TspRI	CASTG	1 cut(s)	841
Van91I	CCANNNNNTGG	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	1045
XagI	CCTNNNNNAGG	2 cut(s)	651, 702
XapI	RAATTY	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	1 cut(s)	1123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.