Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008017

Physical Location & Seq

Genomic Coordinates Reverse (-)

17105937 .. 17106829

Gene Structure 893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0197700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCTTCCAAGGCTTTAGCTACCACTGCTCTTCTCCTCTCCCTTAACCTCCTCTTCTTCACTTTGGTCACCTCCACAAGCACTCCTTGCCCACCACCGCCTAAGAAGCACCACCACCACCCAAAAAACGCAAGCCCTGCACCGCCCAAGCCCTCTAAGGCCGTGTGCCCCAAGGACACCTTGAAGTTGGGAGCTTGCGCTGACGTGTTGAACGGCTTGGTGCACCTTGTGGTTGGTCCACCAAAGTTCCCTTGCTGCAGCCTCATTCAGGGTCTCGTTGATCTTGATGCCGCTGTGTGCCTTTGCACTGCTATTAAGGCTAATGTTCTGGGCATCAACCTTAACGTCCCCGTTTCTTTGAGCTTGCTCTTGAACTACTGTGGCAAAAAGGTTCCATCCGGCTACGAATGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0032101 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:1900150 GO:1901000 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

138

Amino Acids

14.35

Weight (kDa)

9.03

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	46 - 137	7.2e-08	Probable lipid transfer
Hydrophob_seed	PF14547	55 - 138	1.1e-25	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	56 - 137	3.3e-17	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06634 AT4G06634 AT4G06634
fragaria_vesca	FvH4_5g28700 FvH4_5g28700 FvH4_5g28700 FvH4_5g28700
malus_domestica	MD08G1239600.v1.1
prunus_persica	Prupe.1G576100_v2.0.a1 Prupe.1G576100_v2.0.a1
pyrus_communis	pycom08g20780
rosa_chinensis	RchiOBHm_Chr7g0220861
rosa_laevigata	RLG00000002197
rosa_multiflora	Rmu_ssc0000286.1_g000009
rosa_roxburghii	Rroxscaffold_3G00238940
rosa_rugosa	Rorug07G0197500 Rorug07G0197600 Rorug07G0197700 Rorug07G0197800 Rorug07G0197900.1
rosa_samantha	Rh7AG338100 Rh7BG328800 Rh7CG356200 Rh7DG337000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	98, 143, 291
AdeI	CACNNNGTG	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	268
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	3 cut(s)	184, 211, 373
AjiI	CACGTC	1 cut(s)	205
AluBI	AGCT	3 cut(s)	20, 194, 363
AluI	AGCT	3 cut(s)	20, 194, 363
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	278
Alw44I	GTGCAC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	159
ApaLI	GTGCAC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	255, 258
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	236
BaeGI	GKGCMC	2 cut(s)	170, 225
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	242, 270
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	2 cut(s)	146, 229
BcoDI	GTCTC	1 cut(s)	278
BfmI	CTRYAG	1 cut(s)	256
BisI	GCNGC	3 cut(s)	256, 259, 291
BlsI	GCNGC	3 cut(s)	257, 260, 292
Bme18I	GGWCC	1 cut(s)	236
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	393
BmsI	GCATC	2 cut(s)	277, 342
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	9, 171
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
BseDI	CCNNGG	2 cut(s)	9, 171
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseRI	GAGGAG	2 cut(s)	26, 41
BseSI	GKGCMC	2 cut(s)	170, 225
BseXI	GCAGC	2 cut(s)	242, 270
BsgI	GTGCAG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	161
Bso31I	GGTCTC	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	170, 225
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	3 cut(s)	98, 143, 291
BspANI	GGCC	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	393
BspMAI	CTGCAG	1 cut(s)	260
BspQI	GCTCTTC	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	9, 171
BssMI	GATC	1 cut(s)	280
BssT1I	CCWWGG	2 cut(s)	9, 171
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	2 cut(s)	36, 59
BstAPI	GCANNNNNTGC	2 cut(s)	87, 137
BstC8I	GCNNGC	3 cut(s)	133, 196, 365
BstDEI	CTNAG	2 cut(s)	102, 156
BstEII	GGTNACC	1 cut(s)	67
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	395
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 26, 87, 106, 137, 317
BstPI	GGTNACC	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	256
BstSLI	GKGCMC	2 cut(s)	170, 225
BstV1I	GCAGC	2 cut(s)	242, 270
BsuRI	GGCC	1 cut(s)	161
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	395
BtsI	GCAGTG	2 cut(s)	24, 306
BtsIMutI	CAGTG	2 cut(s)	24, 306
Cac8I	GCNNGC	3 cut(s)	133, 196, 365
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	236
DdeI	CTNAG	2 cut(s)	102, 156
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
DraIII	CACNNNGTG	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	36, 59
EarI	CTCTTC	2 cut(s)	36, 59
Eco130I	CCWWGG	2 cut(s)	9, 171
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	236
Eco91I	GGTNACC	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	9, 171
ErhI	CCWWGG	2 cut(s)	9, 171
FalI	AAGNNNNNCTT	4 cut(s)	70, 102, 164, 196
FaqI	GGGAC	1 cut(s)	332
Fnu4HI	GCNGC	3 cut(s)	256, 259, 291
FokI	GGATG	1 cut(s)	382
Fsp4HI	GCNGC	3 cut(s)	256, 259, 291
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	3 cut(s)	256, 259, 291
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	1 cut(s)	399
HhaI	GCGC	1 cut(s)	200
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	223, 239
Hpy188III	TCNNGA	2 cut(s)	284, 370
Hpy8I	GTNNAC	2 cut(s)	223, 239
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	2 cut(s)	204, 345
HpyCH4V	TGCA	4 cut(s)	140, 223, 258, 306
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 26, 87, 106, 137, 317
HpyF3I	CTNAG	2 cut(s)	102, 156
HpySE526I	ACGT	2 cut(s)	204, 345
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	280
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	4 cut(s)	150, 254, 314, 412
Lsp1109I	GCAGC	2 cut(s)	242, 270
LweI	GCATC	2 cut(s)	277, 342
MaeII	ACGT	2 cut(s)	204, 345
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	3 cut(s)	23, 46, 49
MhlI	GDGCHC	2 cut(s)	170, 225
MnlI	CCTC	6 cut(s)	47, 59, 62, 82, 163, 272
MseI	TTAA	3 cut(s)	45, 315, 342
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	6 cut(s)	11, 26, 87, 106, 137, 317
NdeII	GATC	1 cut(s)	280
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	36
PkrI	GCNGC	3 cut(s)	257, 260, 292
PspEI	GGTNACC	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	260
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	3 cut(s)	45, 315, 342
SatI	GCNGC	3 cut(s)	256, 259, 291
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	1 cut(s)	236
SduI	GDGCHC	2 cut(s)	170, 225
SfaNI	GCATC	2 cut(s)	277, 342
SfcI	CTRYAG	1 cut(s)	256
SinI	GGWCC	1 cut(s)	236
SsiI	CCGC	3 cut(s)	98, 143, 291
StyI	CCWWGG	2 cut(s)	9, 171
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	2 cut(s)	207, 348
TauI	GCSGC	1 cut(s)	293
Tru1I	TTAA	3 cut(s)	45, 315, 342
Tru9I	TTAA	3 cut(s)	45, 315, 342
TscAI	CASTG	2 cut(s)	31, 313
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	2 cut(s)	255, 258
Tsp45I	GTSAC	1 cut(s)	67
TspRI	CASTG	2 cut(s)	31, 313
VneI	GTGCAC	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	236
XagI	CCTNNNNNAGG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.