Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008017

Physical Location & Seq

Genomic Coordinates Reverse (-)

17096331 .. 17098053

Gene Structure 1723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0197600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGATGGGTTCAAAGTCTACTGCCGTGTTCTTCATCTTCTTGATTTGCATGGTAATTGCGTTGCCACCAATTCAAGCTTGTGCTCCTTGTACTCAGCCTCATCCACCAAAACCGCCTAAACATCATCCAGGCCATTCCAAAATTCCTCCCCACCCCAAACACCCACCACACCACGGAGGTGGAGGAGGCGGCGGCGGCGGCGGTGGTGGAGGCGGAAAAGGAGGCGGCGGAGGCAAAGGAGGTGGAGGTGGAATTGGTGGTCACCCAAAAGTTCCCCCCCCATCCAAAAACCCGCCAGTTGTATCTCCACCAATAATAACACCCCCTATTACTAAACCTCCTGTGACAATCCCACCTCCTTCCCCCTCGTACCCACCTTACATCCCTCCTCCAACGCCTCCTTGTGCTGGATGCGGTGGAGGAGGAGGCGGAGGAGGAGGTGGTGGCTCGGGTAAACATCCTCCGCCTTCTACTACACCAGCTACTTGTCCTATTGATGCGCTGAAGTTAGGGCTTTGTGTGGATGTACTGGGTGGTTTGGTGCATATCGGGTTGGGGAATCCAGTTGAGAATGCTTGCTGTCCCGTGCTCCAAGGGTTGCTTGAGCTTGAAGCAGCGATTTGTCTTTGCACGACCATAAGGCTTAAGCTGCTAAACCTAAACATCTTCATTCCTCTTGCTCTTCAAGCTTTGATCACTTGCGGCATAACTCCTCCTCCTGGTTTTGTATGTCCGCCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0032101 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:1900150 GO:1901000 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

247

Amino Acids

24.16

Weight (kDa)

9.01

Isoelectric Point (pI)

65.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrophob_seed	PF14547	162 - 245	2e-25	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	163 - 244	1.8e-11	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06634 AT4G06634 AT4G06634
fragaria_vesca	FvH4_5g28700 FvH4_5g28700 FvH4_5g28700 FvH4_5g28700
malus_domestica	MD08G1239600.v1.1
prunus_persica	Prupe.1G576100_v2.0.a1 Prupe.1G576100_v2.0.a1
pyrus_communis	pycom08g20780
rosa_chinensis	RchiOBHm_Chr7g0220861
rosa_laevigata	RLG00000002197
rosa_multiflora	Rmu_ssc0000286.1_g000009
rosa_roxburghii	Rroxscaffold_3G00238940
rosa_rugosa	Rorug07G0197500 Rorug07G0197600 Rorug07G0197700 Rorug07G0197800 Rorug07G0197900.1
rosa_samantha	Rh7AG338100 Rh7BG328800 Rh7CG356200 Rh7DG337000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	524
AfaI	GTAC	3 cut(s)	91, 371, 528
AfiI	CCNNNNNNNGG	3 cut(s)	173, 407, 719
AflII	CTTAAG	1 cut(s)	644
AgsI	TTSAA	4 cut(s)	12, 74, 611, 686
AjnI	CCWGG	2 cut(s)	127, 718
AleI	CACNNNNGTG	1 cut(s)	177
AluBI	AGCT	5 cut(s)	77, 482, 607, 649, 689
AluI	AGCT	5 cut(s)	77, 482, 607, 649, 689
Alw21I	GWGCWC	2 cut(s)	85, 591
Ama87I	CYCGRG	1 cut(s)	448
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	614, 649
ApoI	RAATTY	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	502
AsuHPI	GGTGA	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	448
Bbv12I	GWGCWC	2 cut(s)	85, 591
BbvI	GCAGC	2 cut(s)	626, 636
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	1 cut(s)	8
BciT130I	CCWGG	2 cut(s)	129, 720
BclI	TGATCA	1 cut(s)	693
BfrI	CTTAAG	1 cut(s)	644
BisI	GCNGC	8 cut(s)	190, 193, 196, 199, 226, 615, 650, 703
BlsI	GCNGC	8 cut(s)	191, 194, 197, 200, 227, 616, 651, 704
Bme1390I	CCNGG	2 cut(s)	129, 720
BmeT110I	CYCGRG	1 cut(s)	448
BmrFI	CCNGG	2 cut(s)	129, 720
BmrI	ACTGGG	1 cut(s)	539
BmsI	GCATC	2 cut(s)	401, 487
BmuI	ACTGGG	1 cut(s)	539
BpuEI	CTTGAG	1 cut(s)	623
BsaJI	CCNNGG	2 cut(s)	172, 592
BsaXI	ACNNNNNCTCC	4 cut(s)	322, 352, 700, 730
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 407, 719
Bse1I	ACTGG	3 cut(s)	296, 534, 563
BseBI	CCWGG	2 cut(s)	129, 720
BseDI	CCNNGG	2 cut(s)	172, 592
BseGI	GGATG	7 cut(s)	100, 124, 281, 381, 416, 457, 529
BseLI	CCNNNNNNNGG	3 cut(s)	173, 407, 719
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	3 cut(s)	296, 534, 563
BseRI	GAGGAG	8 cut(s)	198, 378, 435, 438, 447, 450, 702, 705
BseXI	GCAGC	2 cut(s)	626, 636
BshFI	GGCC	1 cut(s)	132
BsiHKAI	GWGCWC	2 cut(s)	85, 591
BsiHKCI	CYCGRG	1 cut(s)	448
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	3 cut(s)	173, 407, 719
BsmFI	GGGAC	1 cut(s)	567
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	448
Bsp1286I	GDGCHC	2 cut(s)	85, 591
Bsp143I	GATC	1 cut(s)	693
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	106
BspQI	GCTCTTC	1 cut(s)	687
BspTI	CTTAAG	1 cut(s)	644
BsrI	ACTGG	3 cut(s)	296, 534, 563
BssECI	CCNNGG	2 cut(s)	172, 592
BssMI	GATC	1 cut(s)	693
BssT1I	CCWWGG	1 cut(s)	592
Bst2UI	CCWGG	2 cut(s)	129, 720
Bst6I	CTCTTC	1 cut(s)	687
BstAFI	CTTAAG	1 cut(s)	644
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	172
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	7 cut(s)	100, 124, 281, 381, 416, 457, 529
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	1 cut(s)	696
BstMBI	GATC	1 cut(s)	693
BstMWI	GCNNNNNNNGC	5 cut(s)	195, 198, 231, 649, 686
BstNI	CCWGG	2 cut(s)	129, 720
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	127, 718
BstV1I	GCAGC	2 cut(s)	626, 636
BstXI	CCANNNNNNTGG	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	7 cut(s)	100, 124, 281, 381, 416, 457, 529
Cac8I	GCNNGC	1 cut(s)	577
CfoI	GCGC	1 cut(s)	502
Csp6I	GTAC	3 cut(s)	90, 370, 527
CspCI	CAANNNNNGTGG	2 cut(s)	223, 258
CviAII	CATG	1 cut(s)	49
CviQI	GTAC	3 cut(s)	90, 370, 527
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	695
DpnII	GATC	1 cut(s)	693
Eam1104I	CTCTTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	687
EciI	GGCGGA	5 cut(s)	228, 243, 444, 453, 723
Eco130I	CCWWGG	1 cut(s)	592
Eco57I	CTGAAG	1 cut(s)	524
Eco88I	CYCGRG	1 cut(s)	448
Eco91I	GGTNACC	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	127, 718
EcoT14I	CCWWGG	1 cut(s)	592
ErhI	CCWWGG	1 cut(s)	592
FaeI	CATG	1 cut(s)	52
FaiI	YATR	5 cut(s)	50, 546, 638, 707, 730
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	1 cut(s)	48
FauI	CCCGC	1 cut(s)	300
FbaI	TGATCA	1 cut(s)	693
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	8 cut(s)	190, 193, 196, 199, 226, 615, 650, 703
FokI	GGATG	7 cut(s)	87, 111, 268, 368, 423, 444, 536
Fsp4HI	GCNGC	8 cut(s)	190, 193, 196, 199, 226, 615, 650, 703
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	8 cut(s)	190, 193, 196, 199, 226, 615, 650, 703
HaeIII	GGCC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	502
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HindIII	AAGCTT	2 cut(s)	75, 687
HinfI	GANTC	1 cut(s)	559
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	2 cut(s)	18, 455
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	2 cut(s)	18, 455
HpyAV	CCTTC	2 cut(s)	369, 477
HpyCH4V	TGCA	3 cut(s)	48, 544, 630
HpyF10VI	GCNNNNNNNGC	5 cut(s)	195, 198, 231, 649, 686
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	1 cut(s)	500
Ksp22I	TGATCA	1 cut(s)	693
Kzo9I	GATC	1 cut(s)	693
LguI	GCTCTTC	1 cut(s)	687
LmnI	GCTCC	2 cut(s)	88, 594
Lsp1109I	GCAGC	2 cut(s)	626, 636
LweI	GCATC	2 cut(s)	401, 487
MaeIII	GTNAC	2 cut(s)	260, 343
MalI	GATC	1 cut(s)	695
MboI	GATC	1 cut(s)	693
MboII	GAAGA	4 cut(s)	22, 28, 658, 674
MhlI	GDGCHC	2 cut(s)	85, 591
MluCI	AATT	4 cut(s)	54, 69, 141, 252
MmeI	TCCRAC	1 cut(s)	416
MseI	TTAA	2 cut(s)	645, 742
MslI	CAYNNNNRTG	1 cut(s)	177
MspCI	CTTAAG	1 cut(s)	644
MspR9I	CCNGG	2 cut(s)	129, 720
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	2 cut(s)	129, 720
MwoI	GCNNNNNNNGC	5 cut(s)	195, 198, 231, 649, 686
NdeII	GATC	1 cut(s)	693
NlaIII	CATG	1 cut(s)	52
NmuCI	GTSAC	2 cut(s)	260, 343
OliI	CACNNNNGTG	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	687
PctI	GAATGC	1 cut(s)	577
PfeI	GAWTC	1 cut(s)	559
PkrI	GCNGC	8 cut(s)	191, 194, 197, 200, 227, 616, 651, 704
Psp6I	CCWGG	2 cut(s)	127, 718
PspEI	GGTNACC	1 cut(s)	260
PspGI	CCWGG	2 cut(s)	127, 718
RsaI	GTAC	3 cut(s)	91, 371, 528
RsaNI	GTAC	3 cut(s)	90, 370, 527
RseI	CAYNNNNRTG	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	687
SaqAI	TTAA	2 cut(s)	645, 742
SatI	GCNGC	8 cut(s)	190, 193, 196, 199, 226, 615, 650, 703
Sau3AI	GATC	1 cut(s)	693
ScrFI	CCNGG	2 cut(s)	129, 720
SduI	GDGCHC	2 cut(s)	85, 591
SfaNI	GCATC	2 cut(s)	401, 487
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	2 cut(s)	602, 644
SmoI	CTYRAG	2 cut(s)	602, 644
Sse9I	AATT	4 cut(s)	54, 69, 141, 252
StyD4I	CCNGG	2 cut(s)	127, 718
StyI	CCWWGG	1 cut(s)	592
TasI	AATT	4 cut(s)	54, 69, 141, 252
TatI	WGTACW	2 cut(s)	89, 526
TauI	GCSGC	6 cut(s)	192, 195, 198, 201, 228, 705
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	2 cut(s)	645, 742
Tru9I	TTAA	2 cut(s)	645, 742
TseFI	GTSAC	2 cut(s)	260, 343
TseI	GCWGC	2 cut(s)	614, 649
Tsp45I	GTSAC	2 cut(s)	260, 343
TspDTI	ATGAA	2 cut(s)	22, 658
TspGWI	ACGGA	1 cut(s)	189
Vha464I	CTTAAG	1 cut(s)	644
XapI	RAATTY	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.