Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008017

Physical Location & Seq

Genomic Coordinates Forward (+)

27365658 .. 27370012

Gene Structure 4355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGATACCCAATTCCATCACAATTATTTCGAGAGGCGCACCATCTTCAGATCCAAAGCTCCCGCTGTTAGATGGGTTAAACAATGGGTTCCGCAGGATGTCGTAGCAACAGGTGGAAAGTGCTCTCTCTTGAAATGGGTCACAGAGGGCACGGTAAAGGCTTTGAATGAGAAATCAAAAGAGCTAGTGGCACCAGAGCCAGAACCAGAACCTACAACTGAAGTCCTTTTTCTTTGCAGCTATGAAGGCTGTGGGAAGACCTTTATTGATGCTGGTGCTTTGAGGAAGCATTCTCACATACATGGGGAGAGACAGTATGTTTGTCACTATGAGGGTTGTGGGAAGAAATTTTTGGATAGTTCAAAGTTGAAACGACACTTTCTCATTCATACTGGCGAAAGAGATTTTGTATGCCCTCATGAAGGCTGTGGTAAGGCATTCTCCCTGGATTTCAACCTACGGTCTCACATGAAAACACATTCACAAGAGAACTATCATATATGCCCATACCCAGAATGTGGAAAGAGATATGCACATGAGTACAAGCTCAAAAACCACATTTCATCTCACCATGAAAAGTTGCAGAATGTGCCTGTGGATGTGCCCAAGTATACTGTTCCACCTTCAGAGAAGCAAACAAAAACTCCCAAGCCTTCTGCAGGGGTTTATGGTTCTGCATCATCTGATCGCCCTTATGCCTGCCCTTATGAAGGGTGTGAAAAAGCCTACATCCATGAATACAAGCTTAAACTACATCTGAGGAGAGAGCATCCTGGTCATATGTCTGATGAAAATGCTGAGCATGCCCTTAATACTGCTGACAATGAGATGGACGAAGCCAGTGATCAAGATGTCTATGCGGGAAAACGTGTGAATGGCAAAAGCCAGAAAACAAATAGGGCCAAGCCGAATTTGAAGTTCCCTCCTGCCAAAGTGCGCAAAGGCTCAACTCCATCACAGGCCACTACGAACACAATGAAAAAGCCATGGCCAGTCAAAGAAGTAGTTTATGAAGAAGATAGTGAAGAAACAGAGGAGGACCGTGACAATGTAGAGGATGGTTGGAGGTATGCCGGAAACAACGACGATGATGATGAAGAAACAGAAGATGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0032101 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:1900150 GO:1901000 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

372

Amino Acids

42.6

Weight (kDa)

6.32

Isoelectric Point (pI)

52.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06634 AT4G06634 AT4G06634
fragaria_vesca	FvH4_5g28700 FvH4_5g28700 FvH4_5g28700 FvH4_5g28700
malus_domestica	MD08G1239600.v1.1
prunus_persica	Prupe.1G576100_v2.0.a1 Prupe.1G576100_v2.0.a1
pyrus_communis	pycom08g20780
rosa_chinensis	RchiOBHm_Chr7g0220861
rosa_laevigata	RLG00000002197
rosa_multiflora	Rmu_ssc0000286.1_g000009
rosa_roxburghii	Rroxscaffold_3G00238940
rosa_rugosa	Rorug07G0197500 Rorug07G0197600 Rorug07G0197700 Rorug07G0197800 Rorug07G0197900.1
rosa_samantha	Rh7AG338100 Rh7BG328800 Rh7CG356200 Rh7DG337000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	938
AccB1I	GGYRCC	1 cut(s)	190
AccB7I	CCANNNNNTGG	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	611
AciI	CCGC	3 cut(s)	63, 92, 860
AclWI	GGATC	1 cut(s)	45
AcoI	YGGCCR	1 cut(s)	989
AcsI	RAATTY	2 cut(s)	347, 910
AcuI	CTGAAG	3 cut(s)	31, 240, 609
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	4 cut(s)	422, 518, 659, 710
AflIII	ACRYGT	1 cut(s)	868
AgsI	TTSAA	6 cut(s)	133, 166, 363, 370, 454, 916
AjnI	CCWGG	2 cut(s)	444, 772
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	5 cut(s)	59, 184, 240, 547, 745
AluI	AGCT	5 cut(s)	59, 184, 240, 547, 745
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	2 cut(s)	304, 468
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	3 cut(s)	900, 960, 989
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	2 cut(s)	347, 910
ArsI	GACNNNNNNTTYG	2 cut(s)	303, 335
AspLEI	GCGC	2 cut(s)	39, 939
AspS9I	GGNCC	2 cut(s)	900, 1039
AsuHPI	GGTGA	1 cut(s)	560
AvaII	GGWCC	1 cut(s)	1039
BaeGI	GKGCMC	2 cut(s)	152, 606
BalI	TGGCCA	1 cut(s)	991
BanI	GGYRCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	6 cut(s)	24, 50, 66, 823, 961, 1052
BciT130I	CCWGG	2 cut(s)	446, 774
BclI	TGATCA	1 cut(s)	844
BcoDI	GTCTC	2 cut(s)	304, 468
BfaI	CTAG	2 cut(s)	185, 1117
BfmI	CTRYAG	1 cut(s)	657
BisI	GCNGC	1 cut(s)	238
BlpI	GCTNAGC	1 cut(s)	798
BlsI	GCNGC	1 cut(s)	239
Bme1390I	CCNGG	2 cut(s)	446, 774
Bme18I	GGWCC	1 cut(s)	1039
BmgT120I	GGNCC	2 cut(s)	900, 1039
BmiI	GGNNCC	2 cut(s)	90, 192
BmrFI	CCNGG	2 cut(s)	446, 774
BmsI	GCATC	3 cut(s)	259, 686, 778
BpiI	GAAGAC	1 cut(s)	263
Bpu1102I	GCTNAGC	1 cut(s)	798
BsaI	GGTCTC	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	444, 986
BsaXI	ACNNNNNCTCC	4 cut(s)	299, 329, 628, 658
Bsc4I	CCNNNNNNNGG	4 cut(s)	422, 518, 659, 710
Bse1I	ACTGG	3 cut(s)	397, 840, 992
BseBI	CCWGG	2 cut(s)	446, 774
BseDI	CCNNGG	2 cut(s)	444, 986
BseGI	GGATG	5 cut(s)	103, 604, 729, 769, 1063
BseLI	CCNNNNNNNGG	4 cut(s)	422, 518, 659, 710
BseMII	CTCAG	2 cut(s)	749, 789
BseNI	ACTGG	3 cut(s)	397, 840, 992
BseRI	GAGGAG	2 cut(s)	775, 1049
BseSI	GKGCMC	2 cut(s)	152, 606
BseXI	GCAGC	1 cut(s)	249
BshFI	GGCC	3 cut(s)	902, 962, 991
BshNI	GGYRCC	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	1074
BslI	CCNNNNNNNGG	4 cut(s)	422, 518, 659, 710
BsmAI	GTCTC	2 cut(s)	304, 468
BsmI	GAATGC	2 cut(s)	289, 437
BsnI	GGCC	3 cut(s)	902, 962, 991
Bso31I	GGTCTC	1 cut(s)	468
Bsp1286I	GDGCHC	3 cut(s)	125, 152, 606
Bsp143I	GATC	3 cut(s)	50, 685, 844
Bsp1720I	GCTNAGC	1 cut(s)	798
Bsp19I	CCATGG	1 cut(s)	986
BspACI	CCGC	3 cut(s)	63, 92, 860
BspANI	GGCC	3 cut(s)	902, 962, 991
BspCNI	CTCAG	2 cut(s)	750, 790
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	90, 192
BspMAI	CTGCAG	1 cut(s)	661
BspPI	GGATC	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	468
BsrI	ACTGG	3 cut(s)	397, 840, 992
BssECI	CCNNGG	2 cut(s)	444, 986
BssMI	GATC	3 cut(s)	50, 685, 844
BssNAI	GTATAC	1 cut(s)	612
BssT1I	CCWWGG	1 cut(s)	986
Bst1107I	GTATAC	1 cut(s)	612
Bst2UI	CCWGG	2 cut(s)	446, 774
Bst4CI	ACNGT	5 cut(s)	154, 315, 462, 616, 1043
BstAPI	GCANNNNNTGC	1 cut(s)	589
BstC8I	GCNNGC	2 cut(s)	700, 804
BstDEI	CTNAG	2 cut(s)	758, 798
BstDSI	CCRYGG	1 cut(s)	986
BstENI	CCTNNNNNAGG	3 cut(s)	420, 657, 708
BstF5I	GGATG	5 cut(s)	103, 604, 729, 769, 1063
BstHHI	GCGC	2 cut(s)	39, 939
BstKTI	GATC	3 cut(s)	53, 688, 847
BstMAI	GTCTC	2 cut(s)	304, 468
BstMBI	GATC	3 cut(s)	50, 685, 844
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 589, 803
BstNI	CCWGG	2 cut(s)	446, 774
BstNSI	RCATGY	1 cut(s)	806
BstSCI	CCNGG	2 cut(s)	444, 772
BstSFI	CTRYAG	1 cut(s)	657
BstSLI	GKGCMC	2 cut(s)	152, 606
BstV1I	GCAGC	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BstZ17I	GTATAC	1 cut(s)	612
BsuRI	GGCC	3 cut(s)	902, 962, 991
BtgI	CCRYGG	1 cut(s)	986
BtsCI	GGATG	5 cut(s)	103, 604, 729, 769, 1063
BtsIMutI	CAGTG	1 cut(s)	847
Cac8I	GCNNGC	2 cut(s)	700, 804
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	2 cut(s)	39, 939
Cfr13I	GGNCC	2 cut(s)	900, 1039
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	8 cut(s)	302, 419, 469, 536, 572, 734, 803, 987
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	2 cut(s)	758, 798
DpnI	GATC	3 cut(s)	52, 687, 846
DpnII	GATC	3 cut(s)	50, 685, 844
EaeI	YGGCCR	1 cut(s)	989
Eco130I	CCWWGG	1 cut(s)	986
Eco31I	GGTCTC	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	1039
Eco57I	CTGAAG	3 cut(s)	31, 240, 609
EcoNI	CCTNNNNNAGG	3 cut(s)	420, 657, 708
EcoRII	CCWGG	2 cut(s)	444, 772
EcoT14I	CCWWGG	1 cut(s)	986
ErhI	CCWWGG	1 cut(s)	986
FaeI	CATG	8 cut(s)	305, 422, 472, 539, 575, 737, 806, 990
FatI	CATG	8 cut(s)	301, 418, 468, 535, 571, 733, 802, 986
FauI	CCCGC	2 cut(s)	70, 853
FauNDI	CATATG	1 cut(s)	780
FbaI	TGATCA	1 cut(s)	844
FblI	GTMKAC	1 cut(s)	611
Fnu4HI	GCNGC	1 cut(s)	238
FokI	GGATG	5 cut(s)	110, 611, 716, 756, 1070
Fsp4HI	GCNGC	1 cut(s)	238
FspBI	CTAG	2 cut(s)	185, 1117
FspI	TGCGCA	1 cut(s)	938
GlaI	GCGC	2 cut(s)	38, 938
GluI	GCNGC	1 cut(s)	238
HaeIII	GGCC	3 cut(s)	902, 962, 991
HapII	CCGG	1 cut(s)	1074
HhaI	GCGC	2 cut(s)	39, 939
Hin1II	CATG	8 cut(s)	305, 422, 472, 539, 575, 737, 806, 990
Hin6I	GCGC	2 cut(s)	37, 937
HinP1I	GCGC	2 cut(s)	37, 937
HindIII	AAGCTT	1 cut(s)	743
HpaII	CCGG	1 cut(s)	1074
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	612
Hpy188I	TCNGA	5 cut(s)	50, 628, 685, 759, 787
Hpy188III	TCNNGA	4 cut(s)	31, 130, 419, 848
Hpy8I	GTNNAC	1 cut(s)	612
Hpy99I	CGWCG	1 cut(s)	1088
HpyAV	CCTTC	5 cut(s)	239, 416, 633, 663, 704
HpyCH4III	ACNGT	5 cut(s)	154, 315, 462, 616, 1043
HpyCH4IV	ACGT	1 cut(s)	868
HpyCH4V	TGCA	5 cut(s)	237, 533, 583, 659, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 589, 803
HpyF3I	CTNAG	2 cut(s)	758, 798
HpySE526I	ACGT	1 cut(s)	868
Hsp92II	CATG	8 cut(s)	305, 422, 472, 539, 575, 737, 806, 990
HspAI	GCGC	2 cut(s)	37, 937
Ksp22I	TGATCA	1 cut(s)	844
Kzo9I	GATC	3 cut(s)	50, 685, 844
LmnI	GCTCC	1 cut(s)	64
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	3 cut(s)	259, 686, 778
MaeI	CTAG	2 cut(s)	185, 1117
MaeII	ACGT	1 cut(s)	868
MaeIII	GTNAC	3 cut(s)	139, 323, 1043
MalI	GATC	3 cut(s)	52, 687, 846
MboI	GATC	3 cut(s)	50, 685, 844
MboII	GAAGA	8 cut(s)	37, 268, 355, 1025, 1028, 1037, 1109, 1118
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	3 cut(s)	125, 152, 606
MlsI	TGGCCA	1 cut(s)	991
MluCI	AATT	4 cut(s)	11, 22, 347, 910
MluNI	TGGCCA	1 cut(s)	991
MmeI	TCCRAC	1 cut(s)	1043
Mox20I	TGGCCA	1 cut(s)	991
MscI	TGGCCA	1 cut(s)	991
MseI	TTAA	3 cut(s)	78, 747, 810
MslI	CAYNNNNRTG	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	991
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	1074
MspR9I	CCNGG	2 cut(s)	446, 774
Mva1269I	GAATGC	2 cut(s)	289, 437
MvaI	CCWGG	2 cut(s)	446, 774
MwoI	GCNNNNNNNGC	3 cut(s)	246, 589, 803
NcoI	CCATGG	1 cut(s)	986
NdeI	CATATG	1 cut(s)	780
NdeII	GATC	3 cut(s)	50, 685, 844
NlaIII	CATG	8 cut(s)	305, 422, 472, 539, 575, 737, 806, 990
NlaIV	GGNNCC	2 cut(s)	90, 192
NmuCI	GTSAC	3 cut(s)	139, 323, 1043
NsbI	TGCGCA	1 cut(s)	938
NspI	RCATGY	1 cut(s)	806
PaeI	GCATGC	1 cut(s)	806
PagI	TCATGA	1 cut(s)	418
PctI	GAATGC	2 cut(s)	289, 437
PflMI	CCANNNNNTGG	1 cut(s)	518
PkrI	GCNGC	1 cut(s)	239
Psp6I	CCWGG	2 cut(s)	444, 772
PspGI	CCWGG	2 cut(s)	444, 772
PspN4I	GGNNCC	2 cut(s)	90, 192
PspPI	GGNCC	2 cut(s)	900, 1039
PstI	CTGCAG	1 cut(s)	661
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	3 cut(s)	78, 747, 810
SatI	GCNGC	1 cut(s)	238
Sau3AI	GATC	3 cut(s)	50, 685, 844
Sau96I	GGNCC	2 cut(s)	900, 1039
ScrFI	CCNGG	2 cut(s)	446, 774
SduI	GDGCHC	3 cut(s)	125, 152, 606
SfaNI	GCATC	3 cut(s)	259, 686, 778
SfcI	CTRYAG	1 cut(s)	657
SinI	GGWCC	1 cut(s)	1039
SmiMI	CAYNNNNRTG	1 cut(s)	300
SphI	GCATGC	1 cut(s)	806
Sse9I	AATT	4 cut(s)	11, 22, 347, 910
SsiI	CCGC	3 cut(s)	63, 92, 860
SspMI	CTAG	2 cut(s)	185, 1117
StyD4I	CCNGG	2 cut(s)	444, 772
StyI	CCWWGG	1 cut(s)	986
TaaI	ACNGT	5 cut(s)	154, 315, 462, 616, 1043
TaiI	ACGT	1 cut(s)	871
TaqI	TCGA	1 cut(s)	30
TasI	AATT	4 cut(s)	11, 22, 347, 910
TatI	WGTACW	1 cut(s)	540
Tru1I	TTAA	3 cut(s)	78, 747, 810
Tru9I	TTAA	3 cut(s)	78, 747, 810
TscAI	CASTG	1 cut(s)	847
TseFI	GTSAC	3 cut(s)	139, 323, 1043
TseI	GCWGC	1 cut(s)	237
Tsp45I	GTSAC	3 cut(s)	139, 323, 1043
TspRI	CASTG	1 cut(s)	847
Van91I	CCANNNNNTGG	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	1039
XagI	CCTNNNNNAGG	3 cut(s)	420, 657, 708
XapI	RAATTY	2 cut(s)	347, 910
XceI	RCATGY	1 cut(s)	806
XmiI	GTMKAC	1 cut(s)	611
XspI	CTAG	2 cut(s)	185, 1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.