Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008017

Physical Location & Seq

Genomic Coordinates Reverse (-)

19873341 .. 19877811

Gene Structure 4471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28700.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGATACCCAATTCCATCACAATTATTTCGAGCGGCGCACCATCTTCAGATCGAGAGCTCCCGCTGTTAGATGGGTTAAAGAATGGGTTTCGCAGGATGTGGTAGCAACTGGTGGAAAGTGCTCTCTTTTGAAATGGGTTACAGGTACACTGATTACCAGCTATGAAGGCTGTGGGAAGACCTTCATTGATGCTGGTGCTTTGAGGAAGCATTCTCACATTCATGGGGAGAGACAGTATGTTTGTCACTATGAGGGTTGCGGGAAGAAATTTTTGGATAGTTCAAAGTTGAAACGACACTTTCTCATTCATACTGGCGAAAGAGATTTTGTTTGCCCTCATGAAGGCTGTGGTAAGGCATTCTCCCTGGATTTCAACCTACGGTCTCACATGAAAACGCATTCCCAAGAGAACTATCATATATGCCCATACCCAGATTGTGGAAAGAGATATGCACATGAGTACAAGCTAAAAAACCACATCTCATCTCATCATGAAAAGAATGTGCCCGTAGATGTGCCTAAGTATGCTGTTCCACCTTCAGAGAAACAAACAAAAACTCCCAAAACACCTGCAGGAGTTTATGGTTCTGCATCATCCGATCGCCCGTATGCCTGCCCTTATGAAGGGTGTGAAAAAGCCTACATCCATGAATACAAGCTTAAACTACATCTGAGGAGAGAGCATCCTGGTCATATGTCTGATGAAAATGCTGAGCATGCCCCTAATACTGTTGACAATGAGATGGATGAAACCAGTGATCAAGATGTTTATGCAGTAAAACGTGCAAATGGAAAAAGCCAGAAAACAAATAGGGCCAAACCGAATTTGAAATTCCCTCCTGCCAAAGTGCGCAAAGGCTCAACTCCATATCAGGCCACTACAAACACAATGAAAAAGCCATGGCCAGTCAAAGAAGTAGTTTATGAAGAAGACAGTGAAGAAACGGAGGAGGACCGTGACAATGTAGAGGATGGATGGAGGTATGTTGGAAACAATGACGATGATGATGAAGAGACAGAATATGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0032101 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:1900150 GO:1901000 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

345

Amino Acids

39.66

Weight (kDa)

6.72

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-H2C2_2	PF13465	28 - 53	1e-05	Zinc-finger double domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06634 AT4G06634 AT4G06634
fragaria_vesca	FvH4_5g28700 FvH4_5g28700 FvH4_5g28700 FvH4_5g28700
malus_domestica	MD08G1239600.v1.1
prunus_persica	Prupe.1G576100_v2.0.a1 Prupe.1G576100_v2.0.a1
pyrus_communis	pycom08g20780
rosa_chinensis	RchiOBHm_Chr7g0220861
rosa_laevigata	RLG00000002197
rosa_multiflora	Rmu_ssc0000286.1_g000009
rosa_roxburghii	Rroxscaffold_3G00238940
rosa_rugosa	Rorug07G0197500 Rorug07G0197600 Rorug07G0197700 Rorug07G0197800 Rorug07G0197900.1
rosa_samantha	Rh7AG338100 Rh7BG328800 Rh7CG356200 Rh7DG337000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	580
Acc16I	TGCGCA	1 cut(s)	854
Acc36I	ACCTGC	1 cut(s)	580
AccB7I	CCANNNNNTGG	1 cut(s)	440
AccBSI	CCGCTC	1 cut(s)	34
AciI	CCGC	3 cut(s)	34, 63, 261
AcoI	YGGCCR	1 cut(s)	905
AcsI	RAATTY	3 cut(s)	269, 826, 833
AcuI	CTGAAG	2 cut(s)	31, 525
AfaI	GTAC	2 cut(s)	148, 464
AfiI	CCNNNNNNNGG	3 cut(s)	344, 440, 626
AgsI	TTSAA	5 cut(s)	133, 285, 292, 376, 832
AjnI	CCWGG	2 cut(s)	366, 688
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AluBI	AGCT	4 cut(s)	59, 162, 469, 661
AluI	AGCT	4 cut(s)	59, 162, 469, 661
Alw21I	GWGCWC	2 cut(s)	61, 125
Alw26I	GTCTC	3 cut(s)	226, 390, 1010
AoxI	GGCC	3 cut(s)	816, 876, 905
ApoI	RAATTY	3 cut(s)	269, 826, 833
ArsI	GACNNNNNNTTYG	2 cut(s)	225, 257
Asp700I	GAANNNNTTC	1 cut(s)	182
AspLEI	GCGC	2 cut(s)	39, 855
AspS9I	GGNCC	2 cut(s)	816, 955
AvaII	GGWCC	1 cut(s)	955
BaeGI	GKGCMC	1 cut(s)	510
BalI	TGGCCA	1 cut(s)	907
BanII	GRGCYC	1 cut(s)	61
BbsI	GAAGAC	2 cut(s)	185, 939
Bbv12I	GWGCWC	2 cut(s)	61, 125
BccI	CCATC	6 cut(s)	24, 50, 66, 739, 968, 972
BciT130I	CCWGG	2 cut(s)	368, 690
BclI	TGATCA	1 cut(s)	760
BcoDI	GTCTC	3 cut(s)	226, 390, 1010
BfaI	CTAG	1 cut(s)	1033
BfmI	CTRYAG	1 cut(s)	573
BfuAI	ACCTGC	1 cut(s)	580
BisI	GCNGC	1 cut(s)	35
BlpI	GCTNAGC	1 cut(s)	714
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	368, 690
Bme18I	GGWCC	1 cut(s)	955
BmgT120I	GGNCC	2 cut(s)	816, 955
BmrFI	CCNGG	2 cut(s)	368, 690
BmsI	GCATC	3 cut(s)	181, 602, 694
BpiI	GAAGAC	2 cut(s)	185, 939
Bpu1102I	GCTNAGC	1 cut(s)	714
BsaI	GGTCTC	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	366, 902
BsaXI	ACNNNNNCTCC	4 cut(s)	221, 251, 544, 574
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 440, 626
Bse1I	ACTGG	4 cut(s)	115, 319, 756, 908
BseBI	CCWGG	2 cut(s)	368, 690
BseDI	CCNNGG	2 cut(s)	366, 902
BseGI	GGATG	7 cut(s)	103, 596, 645, 685, 754, 979, 983
BseLI	CCNNNNNNNGG	3 cut(s)	344, 440, 626
BseMII	CTCAG	2 cut(s)	665, 705
BseNI	ACTGG	4 cut(s)	115, 319, 756, 908
BseRI	GAGGAG	2 cut(s)	691, 965
BseSI	GKGCMC	1 cut(s)	510
Bsh1285I	CGRYCG	1 cut(s)	604
BshFI	GGCC	3 cut(s)	818, 878, 907
BsiEI	CGRYCG	1 cut(s)	604
BsiHKAI	GWGCWC	2 cut(s)	61, 125
BslI	CCNNNNNNNGG	3 cut(s)	344, 440, 626
BsmAI	GTCTC	3 cut(s)	226, 390, 1010
BsmI	GAATGC	3 cut(s)	211, 359, 400
BsnI	GGCC	3 cut(s)	818, 878, 907
Bso31I	GGTCTC	1 cut(s)	390
Bsp1286I	GDGCHC	3 cut(s)	61, 125, 510
Bsp143I	GATC	3 cut(s)	50, 601, 760
Bsp1720I	GCTNAGC	1 cut(s)	714
Bsp19I	CCATGG	1 cut(s)	902
BspACI	CCGC	3 cut(s)	34, 63, 261
BspANI	GGCC	3 cut(s)	818, 878, 907
BspCNI	CTCAG	2 cut(s)	666, 706
BspHI	TCATGA	2 cut(s)	340, 493
BspMAI	CTGCAG	1 cut(s)	577
BspMI	ACCTGC	1 cut(s)	580
BspTNI	GGTCTC	1 cut(s)	390
BsrBI	CCGCTC	1 cut(s)	34
BsrI	ACTGG	4 cut(s)	115, 319, 756, 908
BssECI	CCNNGG	2 cut(s)	366, 902
BssMI	GATC	3 cut(s)	50, 601, 760
BssT1I	CCWWGG	1 cut(s)	902
Bst2UI	CCWGG	2 cut(s)	368, 690
Bst4CI	ACNGT	5 cut(s)	237, 384, 733, 938, 959
Bst6I	CTCTTC	1 cut(s)	1008
BstC8I	GCNNGC	2 cut(s)	616, 720
BstDEI	CTNAG	3 cut(s)	522, 674, 714
BstDSI	CCRYGG	1 cut(s)	902
BstENI	CCTNNNNNAGG	2 cut(s)	342, 624
BstF5I	GGATG	7 cut(s)	103, 596, 645, 685, 754, 979, 983
BstHHI	GCGC	2 cut(s)	39, 855
BstKTI	GATC	3 cut(s)	53, 604, 763
BstMAI	GTCTC	3 cut(s)	226, 390, 1010
BstMBI	GATC	3 cut(s)	50, 601, 760
BstMCI	CGRYCG	1 cut(s)	604
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 719
BstNI	CCWGG	2 cut(s)	368, 690
BstNSI	RCATGY	1 cut(s)	722
BstSCI	CCNGG	2 cut(s)	366, 688
BstSFI	CTRYAG	1 cut(s)	573
BstSLI	GKGCMC	1 cut(s)	510
BstV2I	GAAGAC	2 cut(s)	185, 939
BsuRI	GGCC	3 cut(s)	818, 878, 907
BtgI	CCRYGG	1 cut(s)	902
BtsCI	GGATG	7 cut(s)	103, 596, 645, 685, 754, 979, 983
BtsIMutI	CAGTG	3 cut(s)	149, 763, 943
BveI	ACCTGC	1 cut(s)	580
Cac8I	GCNNGC	2 cut(s)	616, 720
CciI	TCATGA	2 cut(s)	340, 493
CfoI	GCGC	2 cut(s)	39, 855
Cfr13I	GGNCC	2 cut(s)	816, 955
Csp6I	GTAC	2 cut(s)	147, 463
CviAII	CATG	8 cut(s)	224, 341, 391, 458, 494, 650, 719, 903
CviQI	GTAC	2 cut(s)	147, 463
DdeI	CTNAG	3 cut(s)	522, 674, 714
DpnI	GATC	3 cut(s)	52, 603, 762
DpnII	GATC	3 cut(s)	50, 601, 760
EaeI	YGGCCR	1 cut(s)	905
Eam1104I	CTCTTC	1 cut(s)	1008
EarI	CTCTTC	1 cut(s)	1008
Ecl136II	GAGCTC	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	902
Eco24I	GRGCYC	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	955
Eco53kI	GAGCTC	1 cut(s)	59
Eco57I	CTGAAG	2 cut(s)	31, 525
EcoICRI	GAGCTC	1 cut(s)	59
EcoNI	CCTNNNNNAGG	2 cut(s)	342, 624
EcoRII	CCWGG	2 cut(s)	366, 688
EcoT14I	CCWWGG	1 cut(s)	902
EcoT38I	GRGCYC	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	902
FaeI	CATG	8 cut(s)	227, 344, 394, 461, 497, 653, 722, 906
FatI	CATG	8 cut(s)	223, 340, 390, 457, 493, 649, 718, 902
FauI	CCCGC	2 cut(s)	70, 254
FauNDI	CATATG	1 cut(s)	696
FbaI	TGATCA	1 cut(s)	760
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	7 cut(s)	110, 583, 632, 672, 761, 986, 990
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	1 cut(s)	1033
FspI	TGCGCA	1 cut(s)	854
GlaI	GCGC	2 cut(s)	38, 854
GluI	GCNGC	1 cut(s)	35
HaeIII	GGCC	3 cut(s)	818, 878, 907
HhaI	GCGC	2 cut(s)	39, 855
Hin1II	CATG	8 cut(s)	227, 344, 394, 461, 497, 653, 722, 906
Hin6I	GCGC	2 cut(s)	37, 853
HinP1I	GCGC	2 cut(s)	37, 853
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HindIII	AAGCTT	1 cut(s)	659
Hpy166II	GTNNAC	2 cut(s)	149, 736
Hpy188I	TCNGA	5 cut(s)	50, 544, 601, 675, 703
Hpy188III	TCNNGA	4 cut(s)	54, 341, 494, 764
Hpy8I	GTNNAC	2 cut(s)	149, 736
HpyAV	CCTTC	5 cut(s)	161, 193, 338, 549, 620
HpyCH4III	ACNGT	5 cut(s)	237, 384, 733, 938, 959
HpyCH4IV	ACGT	1 cut(s)	784
HpyCH4V	TGCA	5 cut(s)	455, 575, 593, 776, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 719
HpyF3I	CTNAG	3 cut(s)	522, 674, 714
HpySE526I	ACGT	1 cut(s)	784
Hsp92II	CATG	8 cut(s)	227, 344, 394, 461, 497, 653, 722, 906
HspAI	GCGC	2 cut(s)	37, 853
Ksp22I	TGATCA	1 cut(s)	760
Kzo9I	GATC	3 cut(s)	50, 601, 760
LmnI	GCTCC	1 cut(s)	64
LweI	GCATC	3 cut(s)	181, 602, 694
MaeI	CTAG	1 cut(s)	1033
MaeII	ACGT	1 cut(s)	784
MaeIII	GTNAC	3 cut(s)	139, 245, 959
MalI	GATC	3 cut(s)	52, 603, 762
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	3 cut(s)	50, 601, 760
MboII	GAAGA	7 cut(s)	37, 190, 277, 941, 944, 953, 1025
MhlI	GDGCHC	3 cut(s)	61, 125, 510
MlsI	TGGCCA	1 cut(s)	907
MluCI	AATT	5 cut(s)	11, 22, 269, 826, 833
MluNI	TGGCCA	1 cut(s)	907
MmeI	TCCRAC	1 cut(s)	970
MnlI	CCTC	9 cut(s)	198, 247, 348, 669, 849, 943, 946, 964, 975
Mox20I	TGGCCA	1 cut(s)	907
MroXI	GAANNNNTTC	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	907
MseI	TTAA	2 cut(s)	78, 663
MslI	CAYNNNNRTG	1 cut(s)	222
Msp20I	TGGCCA	1 cut(s)	907
MspA1I	CMGCKG	1 cut(s)	65
MspR9I	CCNGG	2 cut(s)	368, 690
Mva1269I	GAATGC	3 cut(s)	211, 359, 400
MvaI	CCWGG	2 cut(s)	368, 690
MwoI	GCNNNNNNNGC	2 cut(s)	168, 719
NcoI	CCATGG	1 cut(s)	902
NdeI	CATATG	1 cut(s)	696
NdeII	GATC	3 cut(s)	50, 601, 760
NlaIII	CATG	8 cut(s)	227, 344, 394, 461, 497, 653, 722, 906
NmuCI	GTSAC	2 cut(s)	245, 959
NsbI	TGCGCA	1 cut(s)	854
NspI	RCATGY	1 cut(s)	722
PaeI	GCATGC	1 cut(s)	722
PagI	TCATGA	2 cut(s)	340, 493
PaqCI	CACCTGC	1 cut(s)	580
PctI	GAATGC	3 cut(s)	211, 359, 400
PdmI	GAANNNNTTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	440
PkrI	GCNGC	1 cut(s)	36
Ple19I	CGATCG	1 cut(s)	604
Psp124BI	GAGCTC	1 cut(s)	61
Psp6I	CCWGG	2 cut(s)	366, 688
PspGI	CCWGG	2 cut(s)	366, 688
PspPI	GGNCC	2 cut(s)	816, 955
PstI	CTGCAG	1 cut(s)	577
PvuI	CGATCG	1 cut(s)	604
RsaI	GTAC	2 cut(s)	148, 464
RsaNI	GTAC	2 cut(s)	147, 463
RseI	CAYNNNNRTG	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	78, 663
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	3 cut(s)	50, 601, 760
Sau96I	GGNCC	2 cut(s)	816, 955
SbfI	CCTGCAGG	1 cut(s)	577
ScrFI	CCNGG	2 cut(s)	368, 690
SdaI	CCTGCAGG	1 cut(s)	577
SduI	GDGCHC	3 cut(s)	61, 125, 510
SfaNI	GCATC	3 cut(s)	181, 602, 694
SfcI	CTRYAG	1 cut(s)	573
SinI	GGWCC	1 cut(s)	955
SmiMI	CAYNNNNRTG	1 cut(s)	222
SphI	GCATGC	1 cut(s)	722
Sse8387I	CCTGCAGG	1 cut(s)	577
Sse9I	AATT	5 cut(s)	11, 22, 269, 826, 833
SsiI	CCGC	3 cut(s)	34, 63, 261
SspMI	CTAG	1 cut(s)	1033
SstI	GAGCTC	1 cut(s)	61
StyD4I	CCNGG	2 cut(s)	366, 688
StyI	CCWWGG	1 cut(s)	902
TaaI	ACNGT	5 cut(s)	237, 384, 733, 938, 959
TaiI	ACGT	1 cut(s)	787
TaqI	TCGA	2 cut(s)	30, 53
TasI	AATT	5 cut(s)	11, 22, 269, 826, 833
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	1 cut(s)	37
Tru1I	TTAA	2 cut(s)	78, 663
Tru9I	TTAA	2 cut(s)	78, 663
TscAI	CASTG	3 cut(s)	156, 763, 943
TseFI	GTSAC	2 cut(s)	245, 959
Tsp45I	GTSAC	2 cut(s)	245, 959
TspGWI	ACGGA	1 cut(s)	962
TspRI	CASTG	3 cut(s)	156, 763, 943
Van91I	CCANNNNNTGG	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	955
XagI	CCTNNNNNAGG	2 cut(s)	342, 624
XapI	RAATTY	3 cut(s)	269, 826, 833
XceI	RCATGY	1 cut(s)	722
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	1 cut(s)	1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.