Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000286.1

Orthogroup ID

OG0008017

Physical Location & Seq

Genomic Coordinates Forward (+)

41404 .. 45165

Gene Structure 3762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000286.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgggttccgcaggatgtcgtagcaacaggtggaaagtgctctctcttgaaatgggtcacagctatgaaggctgtgggaagacctttattgatgctggtgctttgaggaagcattctcacatacatggggagagacagtatgtttgtcactatgagggttgtgggaagaaatttttggatagttcaaagttgaaacgacactttctcattcatactggcgaaagagattttgtatgccctcatgaaggctgtggtaaggcattctccctggatttcaacctacggtcccacatgaaaacacattcacaagagaactatcatatatgcccatacccagaatgtggaaagagatatgcacatgagtacaagcttaaaaaccacatttcatctcaccatgaaaagttgcagagtgtgcctgtggatgtgcctaagtatactgttccaccttcagagaagcaaacaaaaactcccaagccttctgcaggggtttatggttctgcatcatctgatcgcccttatgcctgcccttatgaagggtgtgaaaaagcctacatccatgaatacaagcttaaactacatctgaggagagagcatcctggtcatatgtctgatgaaaatgctgagcatgcccttaatactgctgacaatgagatggacgaagccagtgatcaagatgtctatgcgggaaaacgtgtgaatggcaaaagccagaaaacaaatagggccaagccgaatttgaagttcccgcctgccaaagtgcgcaaaggctcaactccatctcaggccactacgaacccaatgaaaaagccatggccagtcaaagaagtagtttatgaagaagatagtgaagaaacggaggaggaccgtgacaatgtagaggatggttggaggtatgccggaaacaacgacgatgatgatgaagaaacagaagatgaagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0032101 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:1900150 GO:1901000 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

313

Amino Acids

35.68

Weight (kDa)

6.37

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06634 AT4G06634 AT4G06634
fragaria_vesca	FvH4_5g28700 FvH4_5g28700 FvH4_5g28700 FvH4_5g28700
malus_domestica	MD08G1239600.v1.1
prunus_persica	Prupe.1G576100_v2.0.a1 Prupe.1G576100_v2.0.a1
pyrus_communis	pycom08g20780
rosa_chinensis	RchiOBHm_Chr7g0220861
rosa_laevigata	RLG00000002197
rosa_multiflora	Rmu_ssc0000286.1_g000009
rosa_roxburghii	Rroxscaffold_3G00238940
rosa_rugosa	Rorug07G0197500 Rorug07G0197600 Rorug07G0197700 Rorug07G0197800 Rorug07G0197900.1
rosa_samantha	Rh7AG338100 Rh7BG328800 Rh7CG356200 Rh7DG337000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	761
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	434
AciI	CCGC	3 cut(s)	9, 683, 746
AcoI	YGGCCR	1 cut(s)	812
AcsI	RAATTY	2 cut(s)	170, 733
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	4 cut(s)	245, 341, 482, 533
AflIII	ACRYGT	1 cut(s)	691
AgsI	TTSAA	5 cut(s)	50, 186, 193, 277, 739
AjnI	CCWGG	2 cut(s)	267, 595
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	3 cut(s)	63, 370, 568
AluI	AGCT	3 cut(s)	63, 370, 568
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	127
AoxI	GGCC	3 cut(s)	723, 783, 812
ApoI	RAATTY	2 cut(s)	170, 733
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AspLEI	GCGC	1 cut(s)	762
AspS9I	GGNCC	3 cut(s)	285, 723, 862
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	2 cut(s)	285, 862
BalI	TGGCCA	1 cut(s)	814
BbsI	GAAGAC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	42
BccI	CCATC	3 cut(s)	646, 784, 875
BciT130I	CCWGG	2 cut(s)	269, 597
BclI	TGATCA	1 cut(s)	667
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	940
BfmI	CTRYAG	1 cut(s)	480
BlpI	GCTNAGC	1 cut(s)	621
Bme1390I	CCNGG	2 cut(s)	269, 597
Bme18I	GGWCC	2 cut(s)	285, 862
BmgT120I	GGNCC	3 cut(s)	285, 723, 862
BmiI	GGNNCC	2 cut(s)	7, 287
BmrFI	CCNGG	2 cut(s)	269, 597
BmsI	GCATC	3 cut(s)	82, 509, 601
BpiI	GAAGAC	1 cut(s)	86
Bpu1102I	GCTNAGC	1 cut(s)	621
BsaJI	CCNNGG	2 cut(s)	267, 809
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 451, 481
Bsc4I	CCNNNNNNNGG	4 cut(s)	245, 341, 482, 533
Bse1I	ACTGG	3 cut(s)	220, 663, 815
BseBI	CCWGG	2 cut(s)	269, 597
BseDI	CCNNGG	2 cut(s)	267, 809
BseGI	GGATG	5 cut(s)	20, 427, 552, 592, 886
BseLI	CCNNNNNNNGG	4 cut(s)	245, 341, 482, 533
BseMII	CTCAG	3 cut(s)	572, 612, 794
BseNI	ACTGG	3 cut(s)	220, 663, 815
BseRI	GAGGAG	2 cut(s)	598, 872
BshFI	GGCC	3 cut(s)	725, 785, 814
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	897
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	4 cut(s)	245, 341, 482, 533
BsmAI	GTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	271
BsmI	GAATGC	2 cut(s)	112, 260
BsnI	GGCC	3 cut(s)	725, 785, 814
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	508, 667
Bsp1720I	GCTNAGC	1 cut(s)	621
Bsp19I	CCATGG	1 cut(s)	809
BspACI	CCGC	3 cut(s)	9, 683, 746
BspANI	GGCC	3 cut(s)	725, 785, 814
BspCNI	CTCAG	3 cut(s)	573, 613, 793
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	7, 287
BspMAI	CTGCAG	1 cut(s)	484
BsrI	ACTGG	3 cut(s)	220, 663, 815
BssECI	CCNNGG	2 cut(s)	267, 809
BssMI	GATC	2 cut(s)	508, 667
BssNAI	GTATAC	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	809
Bst1107I	GTATAC	1 cut(s)	435
Bst2UI	CCWGG	2 cut(s)	269, 597
Bst4CI	ACNGT	4 cut(s)	138, 285, 439, 866
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstC8I	GCNNGC	3 cut(s)	523, 627, 750
BstDEI	CTNAG	4 cut(s)	429, 581, 621, 780
BstDSI	CCRYGG	1 cut(s)	809
BstENI	CCTNNNNNAGG	3 cut(s)	243, 480, 531
BstF5I	GGATG	5 cut(s)	20, 427, 552, 592, 886
BstHHI	GCGC	1 cut(s)	762
BstKTI	GATC	2 cut(s)	511, 670
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	2 cut(s)	508, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 412, 626
BstNI	CCWGG	2 cut(s)	269, 597
BstNSI	RCATGY	1 cut(s)	629
BstSCI	CCNGG	2 cut(s)	267, 595
BstSFI	CTRYAG	1 cut(s)	480
BstV2I	GAAGAC	1 cut(s)	86
BstZ17I	GTATAC	1 cut(s)	435
BsuRI	GGCC	3 cut(s)	725, 785, 814
BtgI	CCRYGG	1 cut(s)	809
BtsCI	GGATG	5 cut(s)	20, 427, 552, 592, 886
BtsIMutI	CAGTG	1 cut(s)	670
Cac8I	GCNNGC	3 cut(s)	523, 627, 750
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	1 cut(s)	762
Cfr13I	GGNCC	3 cut(s)	285, 723, 862
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	8 cut(s)	125, 242, 292, 359, 395, 557, 626, 810
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	4 cut(s)	429, 581, 621, 780
DpnI	GATC	2 cut(s)	510, 669
DpnII	GATC	2 cut(s)	508, 667
EaeI	YGGCCR	1 cut(s)	812
Eco130I	CCWWGG	1 cut(s)	809
Eco47I	GGWCC	2 cut(s)	285, 862
Eco57I	CTGAAG	1 cut(s)	432
EcoNI	CCTNNNNNAGG	3 cut(s)	243, 480, 531
EcoRII	CCWGG	2 cut(s)	267, 595
EcoT14I	CCWWGG	1 cut(s)	809
ErhI	CCWWGG	1 cut(s)	809
FaeI	CATG	8 cut(s)	128, 245, 295, 362, 398, 560, 629, 813
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	8 cut(s)	124, 241, 291, 358, 394, 556, 625, 809
FauI	CCCGC	2 cut(s)	676, 753
FauNDI	CATATG	1 cut(s)	603
FbaI	TGATCA	1 cut(s)	667
FblI	GTMKAC	1 cut(s)	434
FokI	GGATG	5 cut(s)	27, 434, 539, 579, 893
FspBI	CTAG	1 cut(s)	940
FspI	TGCGCA	1 cut(s)	761
GlaI	GCGC	1 cut(s)	761
HaeIII	GGCC	3 cut(s)	725, 785, 814
HapII	CCGG	1 cut(s)	897
HhaI	GCGC	1 cut(s)	762
Hin1II	CATG	8 cut(s)	128, 245, 295, 362, 398, 560, 629, 813
Hin6I	GCGC	1 cut(s)	760
HinP1I	GCGC	1 cut(s)	760
HindIII	AAGCTT	2 cut(s)	368, 566
HpaII	CCGG	1 cut(s)	897
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	4 cut(s)	451, 508, 582, 610
Hpy188III	TCNNGA	3 cut(s)	47, 242, 671
Hpy8I	GTNNAC	1 cut(s)	435
Hpy99I	CGWCG	1 cut(s)	911
HpyAV	CCTTC	5 cut(s)	62, 239, 456, 486, 527
HpyCH4III	ACNGT	4 cut(s)	138, 285, 439, 866
HpyCH4IV	ACGT	1 cut(s)	691
HpyCH4V	TGCA	4 cut(s)	356, 406, 482, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 412, 626
HpyF3I	CTNAG	4 cut(s)	429, 581, 621, 780
HpySE526I	ACGT	1 cut(s)	691
Hsp92II	CATG	8 cut(s)	128, 245, 295, 362, 398, 560, 629, 813
HspAI	GCGC	1 cut(s)	760
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	2 cut(s)	508, 667
LweI	GCATC	3 cut(s)	82, 509, 601
MaeI	CTAG	1 cut(s)	940
MaeII	ACGT	1 cut(s)	691
MaeIII	GTNAC	3 cut(s)	56, 146, 866
MalI	GATC	2 cut(s)	510, 669
MboI	GATC	2 cut(s)	508, 667
MboII	GAAGA	7 cut(s)	91, 178, 848, 851, 860, 932, 941
MhlI	GDGCHC	1 cut(s)	42
MlsI	TGGCCA	1 cut(s)	814
MluCI	AATT	2 cut(s)	170, 733
MluNI	TGGCCA	1 cut(s)	814
MmeI	TCCRAC	1 cut(s)	866
MnlI	CCTC	8 cut(s)	99, 148, 249, 576, 850, 853, 871, 882
Mox20I	TGGCCA	1 cut(s)	814
MscI	TGGCCA	1 cut(s)	814
MseI	TTAA	3 cut(s)	372, 570, 633
MslI	CAYNNNNRTG	2 cut(s)	63, 123
Msp20I	TGGCCA	1 cut(s)	814
MspI	CCGG	1 cut(s)	897
MspR9I	CCNGG	2 cut(s)	269, 597
Mva1269I	GAATGC	2 cut(s)	112, 260
MvaI	CCWGG	2 cut(s)	269, 597
MwoI	GCNNNNNNNGC	3 cut(s)	69, 412, 626
NcoI	CCATGG	1 cut(s)	809
NdeI	CATATG	1 cut(s)	603
NdeII	GATC	2 cut(s)	508, 667
NlaIII	CATG	8 cut(s)	128, 245, 295, 362, 398, 560, 629, 813
NlaIV	GGNNCC	2 cut(s)	7, 287
NmuCI	GTSAC	3 cut(s)	56, 146, 866
NsbI	TGCGCA	1 cut(s)	761
NspI	RCATGY	1 cut(s)	629
PaeI	GCATGC	1 cut(s)	629
PagI	TCATGA	1 cut(s)	241
PctI	GAATGC	2 cut(s)	112, 260
PflMI	CCANNNNNTGG	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	267, 595
PspGI	CCWGG	2 cut(s)	267, 595
PspN4I	GGNNCC	2 cut(s)	7, 287
PspPI	GGNCC	3 cut(s)	285, 723, 862
PstI	CTGCAG	1 cut(s)	484
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	2 cut(s)	63, 123
SaqAI	TTAA	3 cut(s)	372, 570, 633
Sau3AI	GATC	2 cut(s)	508, 667
Sau96I	GGNCC	3 cut(s)	285, 723, 862
ScrFI	CCNGG	2 cut(s)	269, 597
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	9 cut(s)	32, 65, 86, 282, 372, 448, 570, 694, 893
SfaNI	GCATC	3 cut(s)	82, 509, 601
SfcI	CTRYAG	1 cut(s)	480
SinI	GGWCC	2 cut(s)	285, 862
SmiMI	CAYNNNNRTG	2 cut(s)	63, 123
SphI	GCATGC	1 cut(s)	629
Sse9I	AATT	2 cut(s)	170, 733
SsiI	CCGC	3 cut(s)	9, 683, 746
SspMI	CTAG	1 cut(s)	940
StyD4I	CCNGG	2 cut(s)	267, 595
StyI	CCWWGG	1 cut(s)	809
TaaI	ACNGT	4 cut(s)	138, 285, 439, 866
TaiI	ACGT	1 cut(s)	694
TasI	AATT	2 cut(s)	170, 733
TatI	WGTACW	1 cut(s)	363
Tru1I	TTAA	3 cut(s)	372, 570, 633
Tru9I	TTAA	3 cut(s)	372, 570, 633
TscAI	CASTG	1 cut(s)	670
TseFI	GTSAC	3 cut(s)	56, 146, 866
Tsp45I	GTSAC	3 cut(s)	56, 146, 866
TspGWI	ACGGA	1 cut(s)	869
TspRI	CASTG	1 cut(s)	670
Van91I	CCANNNNNTGG	1 cut(s)	341
VpaK11BI	GGWCC	2 cut(s)	285, 862
XagI	CCTNNNNNAGG	3 cut(s)	243, 480, 531
XapI	RAATTY	2 cut(s)	170, 733
XceI	RCATGY	1 cut(s)	629
XmiI	GTMKAC	1 cut(s)	434
XspI	CTAG	1 cut(s)	940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.