Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008017

Physical Location & Seq

Genomic Coordinates Reverse (-)

20434807 .. 20439510

Gene Structure 4704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGACTCCCAATTCCATCACAATTACTTCGAGAGGCGCCCAATCTTCCGATCCAAGACTCCCGCTGTCAAATGGTTCAAAGAATGGGTTCCGCAAGATGTCGTAGCAACTGGTGGAAGGTGCTCTCTAATGAAATGGGTCACAGCGGATACATTAAAGGCTTTGAATGAGAAATCAAAGAAAACGGTGGCTCCAGAGCCAGAGCCAGAACCAACAACCGAAGTGCTTTTTCTTTGCAGCTATGACGGCTGTGGGAAAACCTTTATTGATGCTGGTGCTTTGAGGAAGCATTCTCACGTCCATGGGGAGAAACAATATGTTTGTCACTATGAGGGTTGTGGAAAGAAATTTTTGGATAGTTCAAAGTTGAAAAGACACTTTCTTATTCATACGGGAGAAAGGGACTATGTATGCCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACCTTAGATCGCACATGAAAACACATTCGCAAGAGAACTATCATATCTGTCCATACCCAGACTGTGGAAAGAGATATGCACATGAGTACAAGCTTAAAAACCACATTGTAGCTCATCATGAAAAGATGCCCATCGACGAGCCAGTTTCTGTGCCAAAATATGCCACCCCACCTGCAGAGAAGCAAATCAGAACTCCGAAGCCTCCTTATAGCAACGCATCATTGGATCGCCCTTATGCTTGCCCTTATGATGGGTGTAATAAGGCGTACATCCATGAATACAAGCTTAAGCTGCATCTTAGGAGAGAGCATCCTGGCCATGTGTCTGATGAGAATGCAGAGAATGCCGCTAATAATGCTCACAACGAGATGGATGAAGCCAGTGATCAAGATGTGTATGCTGGAAAACGTGTGAATGGCAAAAGCCAGAAACAAAACAGGCCCAAACCTAACTTGAAGTACCCACCTGCAAAAGTTGCTCAGCGTAAAGGCTCAGCTCCATCTCCTGCACCTATGAACACAATGAAGAAACCCTGGCCGATCAAAGAAGATGTTTACGATGAAGAAGACAGTGAAGAAACAGAGGAGGACCGTGACAATGTCGAAGATGGTTGGAGGTACGGTGAAAACAATGACGACGATGATGAGGAAACAGAGGATGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0032101 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:1900150 GO:1901000 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

374

Amino Acids

42.93

Weight (kDa)

6.24

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06634 AT4G06634 AT4G06634
fragaria_vesca	FvH4_5g28700 FvH4_5g28700 FvH4_5g28700 FvH4_5g28700
malus_domestica	MD08G1239600.v1.1
prunus_persica	Prupe.1G576100_v2.0.a1 Prupe.1G576100_v2.0.a1
pyrus_communis	pycom08g20780
rosa_chinensis	RchiOBHm_Chr7g0220861
rosa_laevigata	RLG00000002197
rosa_multiflora	Rmu_ssc0000286.1_g000009
rosa_roxburghii	Rroxscaffold_3G00238940
rosa_rugosa	Rorug07G0197500 Rorug07G0197600 Rorug07G0197700 Rorug07G0197800 Rorug07G0197900.1
rosa_samantha	Rh7AG338100 Rh7BG328800 Rh7CG356200 Rh7DG337000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	634, 928
Acc36I	ACCTGC	2 cut(s)	634, 928
AccB1I	GGYRCC	1 cut(s)	36
AccB7I	CCANNNNNTGG	1 cut(s)	518
AciI	CCGC	4 cut(s)	63, 92, 146, 801
AclWI	GGATC	2 cut(s)	45, 687
AcoI	YGGCCR	2 cut(s)	769, 989
AcsI	RAATTY	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	37
AfaI	GTAC	4 cut(s)	542, 722, 914, 1073
AfiI	CCNNNNNNNGG	3 cut(s)	422, 518, 704
AflII	CTTAAG	1 cut(s)	740
AflIII	ACRYGT	1 cut(s)	862
AgsI	TTSAA	6 cut(s)	79, 166, 363, 370, 454, 910
AjiI	CACGTC	1 cut(s)	298
AjnI	CCWGG	3 cut(s)	444, 766, 986
AluBI	AGCT	6 cut(s)	240, 547, 566, 739, 745, 950
AluI	AGCT	6 cut(s)	240, 547, 566, 739, 745, 950
Alw21I	GWGCWC	1 cut(s)	125
AlwI	GGATC	2 cut(s)	45, 687
AlwNI	CAGNNNCTG	1 cut(s)	602
AoxI	GGCC	4 cut(s)	435, 769, 893, 989
ApeKI	GCWGC	2 cut(s)	237, 745
ApoI	RAATTY	1 cut(s)	347
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	894, 1042
AsuHPI	GGTGA	1 cut(s)	1088
AvaII	GGWCC	1 cut(s)	1042
BalI	TGGCCA	1 cut(s)	771
BanI	GGYRCC	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	1026
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	249, 732
BccI	CCATC	6 cut(s)	24, 593, 698, 817, 961, 1055
BceAI	ACGGC	1 cut(s)	262
BciT130I	CCWGG	3 cut(s)	446, 768, 988
BciVI	GTATCC	1 cut(s)	142
BclI	TGATCA	1 cut(s)	838
BfaI	CTAG	1 cut(s)	1120
BfmI	CTRYAG	1 cut(s)	627
BfoI	RGCGCY	1 cut(s)	40
BfrI	CTTAAG	1 cut(s)	740
BfuAI	ACCTGC	2 cut(s)	634, 928
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	3 cut(s)	238, 746, 801
BlpI	GCTNAGC	2 cut(s)	933, 946
BlsI	GCNGC	3 cut(s)	239, 747, 802
Bme1390I	CCNGG	3 cut(s)	446, 768, 988
Bme18I	GGWCC	1 cut(s)	1042
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	894, 1042
BmiI	GGNNCC	3 cut(s)	38, 90, 192
BmrFI	CCNGG	3 cut(s)	446, 768, 988
BmsI	GCATC	5 cut(s)	259, 570, 680, 757, 772
BpiI	GAAGAC	1 cut(s)	1026
BpmI	CTGGAG	1 cut(s)	177
Bpu1102I	GCTNAGC	2 cut(s)	933, 946
BsaBI	GATNNNNATC	1 cut(s)	584
BsaHI	GRCGYC	1 cut(s)	37
BsaJI	CCNNGG	3 cut(s)	301, 444, 986
BsaXI	ACNNNNNCTCC	4 cut(s)	175, 205, 1060, 1090
Bsc4I	CCNNNNNNNGG	3 cut(s)	422, 518, 704
Bse1I	ACTGG	3 cut(s)	115, 596, 834
Bse8I	GATNNNNATC	1 cut(s)	584
BseBI	CCWGG	3 cut(s)	446, 768, 988
BseDI	CCNNGG	3 cut(s)	301, 444, 986
BseGI	GGATG	4 cut(s)	723, 763, 832, 1117
BseJI	GATNNNNATC	1 cut(s)	584
BseLI	CCNNNNNNNGG	3 cut(s)	422, 518, 704
BseMII	CTCAG	2 cut(s)	947, 960
BseNI	ACTGG	3 cut(s)	115, 596, 834
BseRI	GAGGAG	1 cut(s)	1052
BseXI	GCAGC	2 cut(s)	249, 732
BsgI	GTGCAG	1 cut(s)	945
BshFI	GGCC	4 cut(s)	437, 771, 895, 991
BshNI	GGYRCC	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	3 cut(s)	422, 518, 704
BsmFI	GGGAC	1 cut(s)	416
BsmI	GAATGC	3 cut(s)	289, 793, 802
BsnI	GGCC	4 cut(s)	437, 771, 895, 991
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	5 cut(s)	50, 461, 679, 838, 993
Bsp1720I	GCTNAGC	2 cut(s)	933, 946
Bsp19I	CCATGG	1 cut(s)	301
BspACI	CCGC	4 cut(s)	63, 92, 146, 801
BspANI	GGCC	4 cut(s)	437, 771, 895, 991
BspCNI	CTCAG	2 cut(s)	946, 959
BspHI	TCATGA	2 cut(s)	418, 571
BspLI	GGNNCC	3 cut(s)	38, 90, 192
BspMAI	CTGCAG	1 cut(s)	631
BspMI	ACCTGC	2 cut(s)	634, 928
BspPI	GGATC	2 cut(s)	45, 687
BspT107I	GGYRCC	1 cut(s)	36
BspTI	CTTAAG	1 cut(s)	740
BsrI	ACTGG	3 cut(s)	115, 596, 834
BssECI	CCNNGG	3 cut(s)	301, 444, 986
BssMI	GATC	5 cut(s)	50, 461, 679, 838, 993
BssNI	GRCGYC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	3 cut(s)	446, 768, 988
Bst4CI	ACNGT	5 cut(s)	187, 518, 1025, 1046, 1076
BstACI	GRCGYC	1 cut(s)	37
BstAFI	CTTAAG	1 cut(s)	740
BstAPI	GCANNNNNTGC	2 cut(s)	797, 929
BstC8I	GCNNGC	1 cut(s)	694
BstDEI	CTNAG	4 cut(s)	458, 752, 933, 946
BstDSI	CCRYGG	1 cut(s)	301
BstENI	CCTNNNNNAGG	1 cut(s)	420
BstF5I	GGATG	4 cut(s)	723, 763, 832, 1117
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	5 cut(s)	53, 464, 682, 841, 996
BstMBI	GATC	5 cut(s)	50, 461, 679, 838, 993
BstMWI	GCNNNNNNNGC	5 cut(s)	246, 745, 797, 809, 929
BstNI	CCWGG	3 cut(s)	446, 768, 988
BstSCI	CCNGG	3 cut(s)	444, 766, 986
BstSFI	CTRYAG	1 cut(s)	627
BstV1I	GCAGC	2 cut(s)	249, 732
BstV2I	GAAGAC	1 cut(s)	1026
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	4 cut(s)	437, 771, 895, 991
BtgI	CCRYGG	1 cut(s)	301
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	4 cut(s)	723, 763, 832, 1117
BtsIMutI	CAGTG	2 cut(s)	841, 1030
BveI	ACCTGC	2 cut(s)	634, 928
Cac8I	GCNNGC	1 cut(s)	694
CaiI	CAGNNNCTG	1 cut(s)	602
CciI	TCATGA	2 cut(s)	418, 571
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	894, 1042
Csp6I	GTAC	4 cut(s)	541, 721, 913, 1072
CviAII	CATG	7 cut(s)	302, 419, 469, 536, 572, 728, 773
CviQI	GTAC	4 cut(s)	541, 721, 913, 1072
DdeI	CTNAG	4 cut(s)	458, 752, 933, 946
DinI	GGCGCC	1 cut(s)	38
DpnI	GATC	5 cut(s)	52, 463, 681, 840, 995
DpnII	GATC	5 cut(s)	50, 461, 679, 838, 993
EaeI	YGGCCR	2 cut(s)	769, 989
Eco130I	CCWWGG	1 cut(s)	301
Eco147I	AGGCCT	1 cut(s)	437
Eco47I	GGWCC	1 cut(s)	1042
EcoNI	CCTNNNNNAGG	1 cut(s)	420
EcoRII	CCWGG	3 cut(s)	444, 766, 986
EcoT14I	CCWWGG	1 cut(s)	301
EgeI	GGCGCC	1 cut(s)	38
EheI	GGCGCC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	7 cut(s)	305, 422, 472, 539, 575, 731, 776
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	7 cut(s)	301, 418, 468, 535, 571, 727, 772
FauI	CCCGC	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	838
Fnu4HI	GCNGC	3 cut(s)	238, 746, 801
FokI	GGATG	3 cut(s)	710, 750, 839
Fsp4HI	GCNGC	3 cut(s)	238, 746, 801
FspBI	CTAG	1 cut(s)	1120
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	3 cut(s)	238, 746, 801
GsuI	CTGGAG	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	40
HaeIII	GGCC	4 cut(s)	437, 771, 895, 991
HhaI	GCGC	1 cut(s)	39
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	7 cut(s)	305, 422, 472, 539, 575, 731, 776
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HindIII	AAGCTT	2 cut(s)	545, 737
HinfI	GANTC	2 cut(s)	5, 58
HphI	GGTGA	1 cut(s)	1088
Hpy166II	GTNNAC	1 cut(s)	1009
Hpy188I	TCNGA	4 cut(s)	50, 644, 651, 781
Hpy188III	TCNNGA	5 cut(s)	31, 194, 419, 572, 842
Hpy8I	GTNNAC	1 cut(s)	1009
Hpy99I	CGWCG	2 cut(s)	593, 1094
HpyAV	CCTTC	3 cut(s)	111, 416, 448
HpyCH4III	ACNGT	5 cut(s)	187, 518, 1025, 1046, 1076
HpyCH4IV	ACGT	2 cut(s)	297, 862
HpyCH4V	TGCA	7 cut(s)	237, 533, 629, 748, 791, 923, 962
HpyF10VI	GCNNNNNNNGC	5 cut(s)	246, 745, 797, 809, 929
HpyF3I	CTNAG	4 cut(s)	458, 752, 933, 946
HpySE526I	ACGT	2 cut(s)	297, 862
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	7 cut(s)	305, 422, 472, 539, 575, 731, 776
HspAI	GCGC	1 cut(s)	37
KasI	GGCGCC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	838
Kzo9I	GATC	5 cut(s)	50, 461, 679, 838, 993
LmnI	GCTCC	2 cut(s)	196, 955
Lsp1109I	GCAGC	2 cut(s)	249, 732
LweI	GCATC	5 cut(s)	259, 570, 680, 757, 772
MaeI	CTAG	1 cut(s)	1120
MaeII	ACGT	2 cut(s)	297, 862
MaeIII	GTNAC	3 cut(s)	139, 323, 1046
MalI	GATC	5 cut(s)	52, 463, 681, 840, 995
MboI	GATC	5 cut(s)	50, 461, 679, 838, 993
MboII	GAAGA	7 cut(s)	37, 991, 1013, 1028, 1031, 1040, 1070
MhlI	GDGCHC	1 cut(s)	125
MlsI	TGGCCA	1 cut(s)	771
MluCI	AATT	3 cut(s)	11, 22, 347
MluNI	TGGCCA	1 cut(s)	771
Mly113I	GGCGCC	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	1046
Mox20I	TGGCCA	1 cut(s)	771
MroXI	GAANNNNTTC	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	771
MseI	TTAA	3 cut(s)	155, 549, 741
MslI	CAYNNNNRTG	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	771
MspA1I	CMGCKG	2 cut(s)	65, 146
MspCI	CTTAAG	1 cut(s)	740
MspR9I	CCNGG	3 cut(s)	446, 768, 988
Mva1269I	GAATGC	3 cut(s)	289, 793, 802
MvaI	CCWGG	3 cut(s)	446, 768, 988
MwoI	GCNNNNNNNGC	5 cut(s)	246, 745, 797, 809, 929
NarI	GGCGCC	1 cut(s)	37
NcoI	CCATGG	1 cut(s)	301
NdeII	GATC	5 cut(s)	50, 461, 679, 838, 993
NlaIII	CATG	7 cut(s)	305, 422, 472, 539, 575, 731, 776
NlaIV	GGNNCC	3 cut(s)	38, 90, 192
NmuCI	GTSAC	3 cut(s)	139, 323, 1046
PagI	TCATGA	2 cut(s)	418, 571
PaqCI	CACCTGC	2 cut(s)	634, 928
PceI	AGGCCT	1 cut(s)	437
PctI	GAATGC	3 cut(s)	289, 793, 802
PdmI	GAANNNNTTC	1 cut(s)	87
PflFI	GACNNNGTC	1 cut(s)	1052
PflMI	CCANNNNNTGG	1 cut(s)	518
PkrI	GCNGC	3 cut(s)	239, 747, 802
PleI	GAGTC	1 cut(s)	52
PluTI	GGCGCC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	52
Psp6I	CCWGG	3 cut(s)	444, 766, 986
PspGI	CCWGG	3 cut(s)	444, 766, 986
PspN4I	GGNNCC	3 cut(s)	38, 90, 192
PspPI	GGNCC	2 cut(s)	894, 1042
PstI	CTGCAG	1 cut(s)	631
PstNI	CAGNNNCTG	1 cut(s)	602
PsyI	GACNNNGTC	1 cut(s)	1052
RsaI	GTAC	4 cut(s)	542, 722, 914, 1073
RsaNI	GTAC	4 cut(s)	541, 721, 913, 1072
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	3 cut(s)	155, 549, 741
SatI	GCNGC	3 cut(s)	238, 746, 801
Sau3AI	GATC	5 cut(s)	50, 461, 679, 838, 993
Sau96I	GGNCC	2 cut(s)	894, 1042
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	3 cut(s)	446, 768, 988
SduI	GDGCHC	1 cut(s)	125
SfaNI	GCATC	5 cut(s)	259, 570, 680, 757, 772
SfcI	CTRYAG	1 cut(s)	627
SfoI	GGCGCC	1 cut(s)	38
SinI	GGWCC	1 cut(s)	1042
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
Sse9I	AATT	3 cut(s)	11, 22, 347
SseBI	AGGCCT	1 cut(s)	437
SsiI	CCGC	4 cut(s)	63, 92, 146, 801
SspDI	GGCGCC	1 cut(s)	36
SspMI	CTAG	1 cut(s)	1120
StuI	AGGCCT	1 cut(s)	437
StyD4I	CCNGG	3 cut(s)	444, 766, 986
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	5 cut(s)	187, 518, 1025, 1046, 1076
TaiI	ACGT	2 cut(s)	300, 865
TaqI	TCGA	3 cut(s)	30, 588, 1056
TasI	AATT	3 cut(s)	11, 22, 347
TatI	WGTACW	1 cut(s)	540
TauI	GCSGC	1 cut(s)	803
Tru1I	TTAA	3 cut(s)	155, 549, 741
Tru9I	TTAA	3 cut(s)	155, 549, 741
TscAI	CASTG	2 cut(s)	841, 1030
TseFI	GTSAC	3 cut(s)	139, 323, 1046
TseI	GCWGC	2 cut(s)	237, 745
Tsp45I	GTSAC	3 cut(s)	139, 323, 1046
TspRI	CASTG	2 cut(s)	841, 1030
Tth111I	GACNNNGTC	1 cut(s)	1052
Van91I	CCANNNNNTGG	1 cut(s)	518
Vha464I	CTTAAG	1 cut(s)	740
VpaK11BI	GGWCC	1 cut(s)	1042
XagI	CCTNNNNNAGG	1 cut(s)	420
XapI	RAATTY	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	1 cut(s)	1120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.