MD08G1239600.v1.1

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
30603036 .. 30608105
5070 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1239600.v1.1.491

Sequence Viewer

Length: 1122 bp
ATGGACTCCCAATTCCATCACAATTACTTCGAGAGGCGCCCAATCTTCCGATCCAAGACTCCCGCTGTCAAATGGTTCAAAGAATGGGTTCCACAAGATGTTGTAGCAACAGGTGGAAAGTGCTCTCTAATGAAATGGGTCACAGCGGATACATTAAAGGCTTTGAATGAGAAATCAAAGAAAACAGTGGCTCCAGAGCCAGAGCCAGAACCAACAACCGAAGTGCTTTTTCTTTGCAGCTATGATGGCTGTGGGAAGACCTTTATTGATGCTGGTGCCTTGAGGAAGCATTCTCACGTCCATGGGGAGAAACAATATGTTTGTCACTATGAGGGTTGTGGAAAGAAATTTTTGGATAGTTCAAAGTTGAAAAGACACTTTCTTATTCATACTGGAGAAAGGGATTATGTATGCCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACCTTAGATCGCACATGAAAACACATTCGCAAGAGAACTATCATATCTGTCCATACCCAGACTGTGGAAAGAGATATGCACATGAGTACAAGCTTAAAAACCACATTGTAGCTCACCATGAAAAGATGCCCATCGACGAGCCAGTTTCTGTGCCAAAATATGCCACCCCACCTGCAGAGAAGCAAATCAGAACTCCGAAGCCTGCTTATAGCAATGCATCATTGGATCGCCCTTATGCTTGCCCATATGACGGGTGTAGTAAGGCGTACATCCATGAATACAAGCTTAAGCTGCATCTCAGGAGAGAGCATCCTGGCCATGTGTCTGATGAGAATGCAGAGAATCCTGCTAATAATGCTCATAACGAGATGGATGAAGCCAGTGATCAAGATGCCTATGCTGGAAAACGTATGAATGGCAAGAGCCAGAAACAAAACAGGCCCAAACCTAACTTGAAGTACCCGCCTGCCAAAATTGCTCAGCGTAAAGGCTCAACTCCATCTCCTGCACCTATGAACACAATGAAGAAACCCTGGCCGATCAAAGAAGATGTTTACGACGAAGAAGACAGTGAAGAAACAGAGGAGGACCGTGACAATGTCGAAGATGGTTGGAGGTACGGTGAAAACAATGACGACGATGATGAGGAAACGGAGGATGAAGACTAG

Protein Analysis

374

Amino Acids

42.92

Weight (kDa)

6.24

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-H2C2_2 PF13465 123 - 148 9.4e-06 Zinc-finger double domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 634
Acc36I ACCTGC 1 cut(s) 634
AccB1I GGYRCC 2 cut(s) 36, 275
AccB7I CCANNNNNTGG 1 cut(s) 518
AciI CCGC 3 cut(s) 63, 146, 917
AclWI GGATC 2 cut(s) 45, 687
AcoI YGGCCR 2 cut(s) 769, 989
AcsI RAATTY 1 cut(s) 347
AcyI GRCGYC 1 cut(s) 37
AfaI GTAC 4 cut(s) 542, 722, 914, 1073
AfiI CCNNNNNNNGG 3 cut(s) 422, 518, 704
AflII CTTAAG 1 cut(s) 740
AgsI TTSAA 6 cut(s) 79, 166, 363, 370, 454, 910
AjiI CACGTC 1 cut(s) 298
AjnI CCWGG 3 cut(s) 444, 766, 986
AluBI AGCT 5 cut(s) 240, 547, 566, 739, 745
AluI AGCT 5 cut(s) 240, 547, 566, 739, 745
Alw21I GWGCWC 1 cut(s) 125
AlwI GGATC 2 cut(s) 45, 687
AlwNI CAGNNNCTG 1 cut(s) 602
AoxI GGCC 4 cut(s) 435, 769, 893, 989
ApeKI GCWGC 2 cut(s) 237, 745
ApoI RAATTY 1 cut(s) 347
Asp700I GAANNNNTTC 1 cut(s) 87
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 894, 1042
AsuHPI GGTGA 2 cut(s) 560, 1088
AvaII GGWCC 1 cut(s) 1042
BalI TGGCCA 1 cut(s) 771
BanI GGYRCC 2 cut(s) 36, 275
BbsI GAAGAC 2 cut(s) 263, 1026
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 2 cut(s) 249, 732
BccI CCATC 6 cut(s) 24, 239, 593, 817, 961, 1055
BciT130I CCWGG 3 cut(s) 446, 768, 988
BciVI GTATCC 1 cut(s) 142
BclI TGATCA 1 cut(s) 838
BfaI CTAG 1 cut(s) 1120
BfmI CTRYAG 1 cut(s) 627
BfoI RGCGCY 1 cut(s) 40
BfrI CTTAAG 1 cut(s) 740
BfuAI ACCTGC 1 cut(s) 634
BfuI GTATCC 1 cut(s) 142
BisI GCNGC 2 cut(s) 238, 746
BlpI GCTNAGC 1 cut(s) 933
BlsI GCNGC 2 cut(s) 239, 747
Bme1390I CCNGG 3 cut(s) 446, 768, 988
Bme18I GGWCC 1 cut(s) 1042
BmgBI CACGTC 1 cut(s) 298
BmgT120I GGNCC 2 cut(s) 894, 1042
BmiI GGNNCC 4 cut(s) 38, 90, 192, 277
BmrFI CCNGG 3 cut(s) 446, 768, 988
BmsI GCATC 6 cut(s) 259, 570, 680, 757, 772, 835
BpiI GAAGAC 2 cut(s) 263, 1026
BpmI CTGGAG 2 cut(s) 177, 414
Bpu1102I GCTNAGC 1 cut(s) 933
BpuEI CTTGAG 1 cut(s) 301
BsaBI GATNNNNATC 1 cut(s) 584
BsaHI GRCGYC 1 cut(s) 37
BsaJI CCNNGG 3 cut(s) 301, 444, 986
BsaXI ACNNNNNCTCC 6 cut(s) 175, 205, 940, 970, 1060, 1090
Bsc4I CCNNNNNNNGG 3 cut(s) 422, 518, 704
Bse1I ACTGG 3 cut(s) 397, 596, 834
Bse3DI GCAATG 1 cut(s) 673
Bse8I GATNNNNATC 1 cut(s) 584
BseBI CCWGG 3 cut(s) 446, 768, 988
BseDI CCNNGG 3 cut(s) 301, 444, 986
BseGI GGATG 4 cut(s) 723, 763, 832, 1117
BseJI GATNNNNATC 1 cut(s) 584
BseLI CCNNNNNNNGG 3 cut(s) 422, 518, 704
BseMI GCAATG 1 cut(s) 673
BseMII CTCAG 2 cut(s) 766, 947
BseNI ACTGG 3 cut(s) 397, 596, 834
BseRI GAGGAG 1 cut(s) 1052
BseXI GCAGC 2 cut(s) 249, 732
BsgI GTGCAG 1 cut(s) 945
BshFI GGCC 4 cut(s) 437, 771, 895, 991
BshNI GGYRCC 2 cut(s) 36, 275
BsiHKAI GWGCWC 1 cut(s) 125
BslI CCNNNNNNNGG 3 cut(s) 422, 518, 704
BsmI GAATGC 2 cut(s) 289, 793
BsnI GGCC 4 cut(s) 437, 771, 895, 991
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 5 cut(s) 50, 461, 679, 838, 993
Bsp1720I GCTNAGC 1 cut(s) 933
Bsp19I CCATGG 1 cut(s) 301
BspACI CCGC 3 cut(s) 63, 146, 917
BspANI GGCC 4 cut(s) 437, 771, 895, 991
BspCNI CTCAG 2 cut(s) 765, 946
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 4 cut(s) 38, 90, 192, 277
BspMAI CTGCAG 1 cut(s) 631
BspMI ACCTGC 1 cut(s) 634
BspPI GGATC 2 cut(s) 45, 687
BspT107I GGYRCC 2 cut(s) 36, 275
BspTI CTTAAG 1 cut(s) 740
BsrDI GCAATG 1 cut(s) 673
BsrI ACTGG 3 cut(s) 397, 596, 834
BssECI CCNNGG 3 cut(s) 301, 444, 986
BssMI GATC 5 cut(s) 50, 461, 679, 838, 993
BssNI GRCGYC 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 3 cut(s) 446, 768, 988
Bst4CI ACNGT 5 cut(s) 187, 518, 1025, 1046, 1076
BstACI GRCGYC 1 cut(s) 37
BstAFI CTTAAG 1 cut(s) 740
BstC8I GCNNGC 3 cut(s) 657, 694, 921
BstDEI CTNAG 3 cut(s) 458, 752, 933
BstDSI CCRYGG 1 cut(s) 301
BstENI CCTNNNNNAGG 1 cut(s) 420
BstF5I GGATG 4 cut(s) 723, 763, 832, 1117
BstH2I RGCGCY 1 cut(s) 40
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 5 cut(s) 53, 464, 682, 841, 996
BstMBI GATC 5 cut(s) 50, 461, 679, 838, 993
BstMWI GCNNNNNNNGC 4 cut(s) 246, 745, 809, 929
BstNI CCWGG 3 cut(s) 446, 768, 988
BstSCI CCNGG 3 cut(s) 444, 766, 986
BstSFI CTRYAG 1 cut(s) 627
BstV1I GCAGC 2 cut(s) 249, 732
BstV2I GAAGAC 2 cut(s) 263, 1026
BsuI GTATCC 1 cut(s) 142
BsuRI GGCC 4 cut(s) 437, 771, 895, 991
BtgI CCRYGG 1 cut(s) 301
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 4 cut(s) 723, 763, 832, 1117
BtsIMutI CAGTG 3 cut(s) 192, 841, 1030
BveI ACCTGC 1 cut(s) 634
Cac8I GCNNGC 3 cut(s) 657, 694, 921
CaiI CAGNNNCTG 1 cut(s) 602
CciI TCATGA 1 cut(s) 418
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 2 cut(s) 894, 1042
Csp6I GTAC 4 cut(s) 541, 721, 913, 1072
CviAII CATG 7 cut(s) 302, 419, 469, 536, 572, 728, 773
CviQI GTAC 4 cut(s) 541, 721, 913, 1072
DdeI CTNAG 3 cut(s) 458, 752, 933
DinI GGCGCC 1 cut(s) 38
DpnI GATC 5 cut(s) 52, 463, 681, 840, 995
DpnII GATC 5 cut(s) 50, 461, 679, 838, 993
EaeI YGGCCR 2 cut(s) 769, 989
Eco130I CCWWGG 1 cut(s) 301
Eco147I AGGCCT 1 cut(s) 437
Eco47I GGWCC 1 cut(s) 1042
EcoNI CCTNNNNNAGG 1 cut(s) 420
EcoRII CCWGG 3 cut(s) 444, 766, 986
EcoT14I CCWWGG 1 cut(s) 301
EcoT22I ATGCAT 1 cut(s) 673
EgeI GGCGCC 1 cut(s) 38
EheI GGCGCC 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 7 cut(s) 305, 422, 472, 539, 575, 731, 776
FatI CATG 7 cut(s) 301, 418, 468, 535, 571, 727, 772
FauI CCCGC 2 cut(s) 70, 924
FauNDI CATATG 1 cut(s) 700
FbaI TGATCA 1 cut(s) 838
Fnu4HI GCNGC 2 cut(s) 238, 746
FokI GGATG 3 cut(s) 710, 750, 839
Fsp4HI GCNGC 2 cut(s) 238, 746
FspBI CTAG 1 cut(s) 1120
GlaI GCGC 1 cut(s) 38
GluI GCNGC 2 cut(s) 238, 746
GsuI CTGGAG 2 cut(s) 177, 414
HaeII RGCGCY 1 cut(s) 40
HaeIII GGCC 4 cut(s) 437, 771, 895, 991
HhaI GCGC 1 cut(s) 39
Hin1I GRCGYC 1 cut(s) 37
Hin1II CATG 7 cut(s) 305, 422, 472, 539, 575, 731, 776
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HindIII AAGCTT 2 cut(s) 545, 737
HinfI GANTC 3 cut(s) 5, 58, 796
HphI GGTGA 2 cut(s) 560, 1088
Hpy166II GTNNAC 1 cut(s) 1009
Hpy188I TCNGA 4 cut(s) 50, 644, 651, 781
Hpy188III TCNNGA 5 cut(s) 31, 194, 419, 754, 842
Hpy8I GTNNAC 1 cut(s) 1009
Hpy99I CGWCG 3 cut(s) 593, 1016, 1094
HpyAV CCTTC 2 cut(s) 416, 448
HpyCH4III ACNGT 5 cut(s) 187, 518, 1025, 1046, 1076
HpyCH4IV ACGT 2 cut(s) 297, 862
HpyCH4V TGCA 7 cut(s) 237, 533, 629, 671, 748, 791, 962
HpyF10VI GCNNNNNNNGC 4 cut(s) 246, 745, 809, 929
HpyF3I CTNAG 3 cut(s) 458, 752, 933
HpySE526I ACGT 2 cut(s) 297, 862
Hsp92I GRCGYC 1 cut(s) 37
Hsp92II CATG 7 cut(s) 305, 422, 472, 539, 575, 731, 776
HspAI GCGC 1 cut(s) 37
KasI GGCGCC 1 cut(s) 36
Ksp22I TGATCA 1 cut(s) 838
Kzo9I GATC 5 cut(s) 50, 461, 679, 838, 993
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 2 cut(s) 249, 732
LweI GCATC 6 cut(s) 259, 570, 680, 757, 772, 835
MaeI CTAG 1 cut(s) 1120
MaeII ACGT 2 cut(s) 297, 862
MaeIII GTNAC 3 cut(s) 139, 323, 1046
MalI GATC 5 cut(s) 52, 463, 681, 840, 995
MboI GATC 5 cut(s) 50, 461, 679, 838, 993
MboII GAAGA 8 cut(s) 37, 268, 991, 1013, 1028, 1031, 1040, 1070
MhlI GDGCHC 1 cut(s) 125
MlsI TGGCCA 1 cut(s) 771
MluCI AATT 4 cut(s) 11, 22, 347, 927
MluNI TGGCCA 1 cut(s) 771
Mly113I GGCGCC 1 cut(s) 37
MlyI GAGTC 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 1046
MnlI CCTC 9 cut(s) 27, 276, 325, 426, 1030, 1033, 1062, 1093, 1102
Mox20I TGGCCA 1 cut(s) 771
Mph1103I ATGCAT 1 cut(s) 673
MroXI GAANNNNTTC 1 cut(s) 87
MscI TGGCCA 1 cut(s) 771
MseI TTAA 3 cut(s) 155, 549, 741
MslI CAYNNNNRTG 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 771
MspA1I CMGCKG 2 cut(s) 65, 146
MspCI CTTAAG 1 cut(s) 740
MspR9I CCNGG 3 cut(s) 446, 768, 988
Mva1269I GAATGC 2 cut(s) 289, 793
MvaI CCWGG 3 cut(s) 446, 768, 988
MwoI GCNNNNNNNGC 4 cut(s) 246, 745, 809, 929
NarI GGCGCC 1 cut(s) 37
NcoI CCATGG 1 cut(s) 301
NdeI CATATG 1 cut(s) 700
NdeII GATC 5 cut(s) 50, 461, 679, 838, 993
NlaIII CATG 7 cut(s) 305, 422, 472, 539, 575, 731, 776
NlaIV GGNNCC 4 cut(s) 38, 90, 192, 277
NmuCI GTSAC 3 cut(s) 139, 323, 1046
NsiI ATGCAT 1 cut(s) 673
PagI TCATGA 1 cut(s) 418
PaqCI CACCTGC 1 cut(s) 634
PceI AGGCCT 1 cut(s) 437
PctI GAATGC 2 cut(s) 289, 793
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 796
PflFI GACNNNGTC 1 cut(s) 1052
PflMI CCANNNNNTGG 1 cut(s) 518
PkrI GCNGC 2 cut(s) 239, 747
PleI GAGTC 1 cut(s) 52
PluTI GGCGCC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 52
Psp6I CCWGG 3 cut(s) 444, 766, 986
PspGI CCWGG 3 cut(s) 444, 766, 986
PspN4I GGNNCC 4 cut(s) 38, 90, 192, 277
PspPI GGNCC 2 cut(s) 894, 1042
PstI CTGCAG 1 cut(s) 631
PstNI CAGNNNCTG 1 cut(s) 602
PsyI GACNNNGTC 1 cut(s) 1052
RsaI GTAC 4 cut(s) 542, 722, 914, 1073
RsaNI GTAC 4 cut(s) 541, 721, 913, 1072
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 3 cut(s) 155, 549, 741
SatI GCNGC 2 cut(s) 238, 746
Sau3AI GATC 5 cut(s) 50, 461, 679, 838, 993
Sau96I GGNCC 2 cut(s) 894, 1042
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 3 cut(s) 446, 768, 988
SduI GDGCHC 1 cut(s) 125
SfaNI GCATC 6 cut(s) 259, 570, 680, 757, 772, 835
SfcI CTRYAG 1 cut(s) 627
SfoI GGCGCC 1 cut(s) 38
SinI GGWCC 1 cut(s) 1042
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 2 cut(s) 280, 740
SmoI CTYRAG 2 cut(s) 280, 740
Sse9I AATT 4 cut(s) 11, 22, 347, 927
SseBI AGGCCT 1 cut(s) 437
SsiI CCGC 3 cut(s) 63, 146, 917
SspDI GGCGCC 1 cut(s) 36
SspMI CTAG 1 cut(s) 1120
StuI AGGCCT 1 cut(s) 437
StyD4I CCNGG 3 cut(s) 444, 766, 986
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 5 cut(s) 187, 518, 1025, 1046, 1076
TaiI ACGT 2 cut(s) 300, 865
TaqI TCGA 3 cut(s) 30, 588, 1056
TasI AATT 4 cut(s) 11, 22, 347, 927
TatI WGTACW 1 cut(s) 540
TfiI GAWTC 1 cut(s) 796
Tru1I TTAA 3 cut(s) 155, 549, 741
Tru9I TTAA 3 cut(s) 155, 549, 741
TscAI CASTG 3 cut(s) 192, 841, 1030
TseFI GTSAC 3 cut(s) 139, 323, 1046
TseI GCWGC 2 cut(s) 237, 745
Tsp45I GTSAC 3 cut(s) 139, 323, 1046
TspGWI ACGGA 1 cut(s) 1121
TspRI CASTG 3 cut(s) 192, 841, 1030
Tth111I GACNNNGTC 1 cut(s) 1052
Van91I CCANNNNNTGG 1 cut(s) 518
Vha464I CTTAAG 1 cut(s) 740
VpaK11BI GGWCC 1 cut(s) 1042
XagI CCTNNNNNAGG 1 cut(s) 420
XapI RAATTY 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 87
XspI CTAG 1 cut(s) 1120
Zsp2I ATGCAT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.