Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008017

Physical Location & Seq

Genomic Coordinates Forward (+)

17091822 .. 17093462

Gene Structure 1641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0197500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCTTCCAGAAGCACTGCCTCACTTGCTCTCTTCCTGGCACTCAATCTCCTCTTCTTCACCATGGTTGCTAATGCCTGCAACACATGCCCTCAGCCGAAGCCAAGGCCGAATCCAAGGCCGAATCCAAATCCGAATCCCAATCCCAATCCCAATCCCAATCCCAATCCCAATCCCAATCCCAATCCGAATCCCAATCCGAATCCGAATCCAAACCCCACCCCATCCAGGGCTACTTGCCCTAGGGATACCCTAAAATTGGGGGTTTGTGCTAATGTCCTCAACGGGTTGCTTAACCTCACCATTGGCAGACCTCCAGTTAGACCTTGCTGCGCTCTCATCCAAGGCCTTGCTGACCTTGAAGCTGCTGTATGCCTCTGCACTGCCATCAGAGCCAACATTCTGGGCATCAACCTCAACATTCCGATTTCTCTCAGCTTGCTACTTAATGTCTGTGGAAACCAGGTCCCAAGAGGGTTCCAATGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0032101 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:1900150 GO:1901000 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

163

Amino Acids

17.22

Weight (kDa)

9.3

Isoelectric Point (pI)

29.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypan_PARP	PF05887	30 - 92	1.2e-06	Procyclic acidic repetitive protein (PARP)
LTP_2	PF14368	70 - 162	5.5e-07	Probable lipid transfer
Hydrophob_seed	PF14547	79 - 163	1.5e-28	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	80 - 162	1e-16	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06634 AT4G06634 AT4G06634
fragaria_vesca	FvH4_5g28700 FvH4_5g28700 FvH4_5g28700 FvH4_5g28700
malus_domestica	MD08G1239600.v1.1
prunus_persica	Prupe.1G576100_v2.0.a1 Prupe.1G576100_v2.0.a1
pyrus_communis	pycom08g20780
rosa_chinensis	RchiOBHm_Chr7g0220861
rosa_laevigata	RLG00000002197
rosa_multiflora	Rmu_ssc0000286.1_g000009
rosa_roxburghii	Rroxscaffold_3G00238940
rosa_rugosa	Rorug07G0197500 Rorug07G0197600 Rorug07G0197700 Rorug07G0197800 Rorug07G0197900.1
rosa_samantha	Rh7AG338100 Rh7BG328800 Rh7CG356200 Rh7DG337000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	3 cut(s)	228, 229, 259
AgsI	TTSAA	1 cut(s)	362
AjnI	CCWGG	3 cut(s)	36, 227, 462
AluBI	AGCT	2 cut(s)	365, 438
AluI	AGCT	2 cut(s)	365, 438
AoxI	GGCC	3 cut(s)	107, 119, 346
ApeKI	GCWGC	2 cut(s)	330, 365
AspA2I	CCTAGG	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	466
AsuHPI	GGTGA	2 cut(s)	52, 292
AvaII	GGWCC	1 cut(s)	466
AvrII	CCTAGG	1 cut(s)	242
BbvCI	CCTCAGC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	317, 352
BccI	CCATC	2 cut(s)	232, 395
BciT130I	CCWGG	3 cut(s)	38, 229, 464
BciVI	GTATCC	1 cut(s)	241
BfaI	CTAG	2 cut(s)	243, 490
BfuI	GTATCC	1 cut(s)	241
BisI	GCNGC	2 cut(s)	331, 366
BlnI	CCTAGG	1 cut(s)	242
BlsI	GCNGC	2 cut(s)	332, 367
Bme1390I	CCNGG	3 cut(s)	38, 229, 464
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	2 cut(s)	468, 479
BmrFI	CCNGG	3 cut(s)	38, 229, 464
BmsI	GCATC	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	300
Bpu10I	CCTNAGC	1 cut(s)	93
BsaJI	CCNNGG	6 cut(s)	63, 104, 116, 228, 242, 343
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	228, 229, 259
Bse1I	ACTGG	1 cut(s)	317
BseBI	CCWGG	3 cut(s)	38, 229, 464
BseDI	CCNNGG	6 cut(s)	63, 104, 116, 228, 242, 343
BseGI	GGATG	2 cut(s)	224, 339
BseLI	CCNNNNNNNGG	3 cut(s)	228, 229, 259
BseMII	CTCAG	2 cut(s)	107, 448
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	317, 352
BsgI	GTGCAG	1 cut(s)	364
BshFI	GGCC	3 cut(s)	109, 121, 348
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	3 cut(s)	228, 229, 259
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	3 cut(s)	109, 121, 348
Bsp19I	CCATGG	1 cut(s)	63
BspANI	GGCC	3 cut(s)	109, 121, 348
BspCNI	CTCAG	2 cut(s)	106, 447
BspLI	GGNNCC	2 cut(s)	468, 479
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	6 cut(s)	63, 104, 116, 228, 242, 343
BssT1I	CCWWGG	5 cut(s)	63, 104, 116, 242, 343
Bst2UI	CCWGG	3 cut(s)	38, 229, 464
Bst6I	CTCTTC	2 cut(s)	38, 59
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	79, 440
BstDEI	CTNAG	2 cut(s)	93, 434
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	224, 339
BstHHI	GCGC	1 cut(s)	335
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 87, 392
BstNI	CCWGG	3 cut(s)	38, 229, 464
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	3 cut(s)	36, 227, 462
BstV1I	GCAGC	2 cut(s)	317, 352
BstXI	CCANNNNNNTGG	1 cut(s)	403
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	109, 121, 348
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	224, 339
BtsI	GCAGTG	2 cut(s)	15, 381
BtsIMutI	CAGTG	2 cut(s)	15, 381
Cac8I	GCNNGC	2 cut(s)	79, 440
CfoI	GCGC	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	466
CsiI	ACCWGGT	1 cut(s)	462
CviAII	CATG	2 cut(s)	64, 87
DdeI	CTNAG	2 cut(s)	93, 434
Eam1104I	CTCTTC	2 cut(s)	38, 59
EarI	CTCTTC	2 cut(s)	38, 59
Eco130I	CCWWGG	5 cut(s)	63, 104, 116, 242, 343
Eco147I	AGGCCT	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	466
EcoO109I	RGGNCCY	1 cut(s)	466
EcoRII	CCWGG	3 cut(s)	36, 227, 462
EcoT14I	CCWWGG	5 cut(s)	63, 104, 116, 242, 343
ErhI	CCWWGG	5 cut(s)	63, 104, 116, 242, 343
FaeI	CATG	2 cut(s)	67, 90
FaiI	YATR	3 cut(s)	65, 88, 373
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	2 cut(s)	63, 86
Fnu4HI	GCNGC	2 cut(s)	331, 366
FokI	GGATG	2 cut(s)	211, 326
Fsp4HI	GCNGC	2 cut(s)	331, 366
FspBI	CTAG	2 cut(s)	243, 490
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	2 cut(s)	331, 366
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	3 cut(s)	109, 121, 348
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	2 cut(s)	67, 90
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HinfI	GANTC	6 cut(s)	112, 124, 136, 190, 202, 208
HphI	GGTGA	2 cut(s)	52, 292
Hpy188I	TCNGA	6 cut(s)	135, 189, 201, 207, 392, 426
Hpy188III	TCNNGA	1 cut(s)	9
HpyCH4V	TGCA	2 cut(s)	81, 381
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 87, 392
HpyF3I	CTNAG	2 cut(s)	93, 434
Hsp92II	CATG	2 cut(s)	67, 90
HspAI	GCGC	1 cut(s)	333
Lsp1109I	GCAGC	2 cut(s)	317, 352
LweI	GCATC	1 cut(s)	417
MabI	ACCWGGT	1 cut(s)	462
MaeI	CTAG	2 cut(s)	243, 490
MboII	GAAGA	3 cut(s)	25, 46, 49
MluCI	AATT	1 cut(s)	257
MnlI	CCTC	9 cut(s)	31, 62, 102, 290, 308, 324, 386, 425, 467
MseI	TTAA	2 cut(s)	294, 447
MspR9I	CCNGG	3 cut(s)	38, 229, 464
MvaI	CCWGG	3 cut(s)	38, 229, 464
MwoI	GCNNNNNNNGC	3 cut(s)	26, 87, 392
NcoI	CCATGG	1 cut(s)	63
NlaIII	CATG	2 cut(s)	67, 90
NlaIV	GGNNCC	2 cut(s)	468, 479
NspI	RCATGY	1 cut(s)	90
PceI	AGGCCT	1 cut(s)	348
PfeI	GAWTC	6 cut(s)	112, 124, 136, 190, 202, 208
PkrI	GCNGC	2 cut(s)	332, 367
PpuMI	RGGWCCY	1 cut(s)	466
Psp5II	RGGWCCY	1 cut(s)	466
Psp6I	CCWGG	3 cut(s)	36, 227, 462
PspGI	CCWGG	3 cut(s)	36, 227, 462
PspN4I	GGNNCC	2 cut(s)	468, 479
PspPI	GGNCC	1 cut(s)	466
PspPPI	RGGWCCY	1 cut(s)	466
SaqAI	TTAA	2 cut(s)	294, 447
SatI	GCNGC	2 cut(s)	331, 366
Sau96I	GGNCC	1 cut(s)	466
ScrFI	CCNGG	3 cut(s)	38, 229, 464
SetI	ASST	8 cut(s)	300, 316, 328, 360, 367, 417, 440, 468
SexAI	ACCWGGT	1 cut(s)	462
SfaNI	GCATC	1 cut(s)	417
SinI	GGWCC	1 cut(s)	466
Sse9I	AATT	1 cut(s)	257
SseBI	AGGCCT	1 cut(s)	348
SspMI	CTAG	2 cut(s)	243, 490
StuI	AGGCCT	1 cut(s)	348
StyD4I	CCNGG	3 cut(s)	36, 227, 462
StyI	CCWWGG	5 cut(s)	63, 104, 116, 242, 343
TasI	AATT	1 cut(s)	257
TfiI	GAWTC	6 cut(s)	112, 124, 136, 190, 202, 208
Tru1I	TTAA	2 cut(s)	294, 447
Tru9I	TTAA	2 cut(s)	294, 447
TscAI	CASTG	2 cut(s)	22, 388
TseI	GCWGC	2 cut(s)	330, 365
TspRI	CASTG	2 cut(s)	22, 388
VpaK11BI	GGWCC	1 cut(s)	466
XceI	RCATGY	1 cut(s)	90
XmaJI	CCTAGG	1 cut(s)	242
XspI	CTAG	2 cut(s)	243, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.