Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008017

Physical Location & Seq

Genomic Coordinates Reverse (-)

42548749 .. 42553574

Gene Structure 4826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG338100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTCCTGCTTGTTTTCTGTTCTTATGACAGTAATGGGTTCTCCCGAGTTTTCTCATTTTTTCCTGTTTTTCTTAGAGGGCACGGTAAAGGCTTTGAATGAGAAATCAAAAGAGCTAGTGGCACCAGAGCCAGAACCAGAACCTACAACTGAAGTCCTTTTTCTTTGCAGCTATGAAGGCTGTGGGAAGACCTTTATTGATGCTGGTGCTTTGAGGAAGCATTCTCATATACATGGGGAGAGACAGTATGTTTGTCACTATGAGGGTTGTGGGAAGAAATTTTTGGATAGTTCAAAGTTGAAACGACACTTTCTCATTCATACTGGCGAAAGAGATTTTGTATGCCCTCATGAAGGCTGTGGTAAGGCATTCTCCCTGGATTTCAACCTACGGTCCCACATGAAAACACATTCACAAGAGAACTATCATATATGCCCATACCCAGAATGTGGAAAGAGATATGCACATGAGTACAAGCTTAAAAACCACATTTCATCTCACCATGAAAAGTTGCAGAGTGTGCCTGTGGATGTGCCTAAGTATACTGTTCCACCTTCAGAGAAGCAAACAAAAACTCCCAAGCCTTCTGCAGGGGTTTATGGTTCTGCATCATCTGATCGACCTTATGCCTGCCCTTATGAAGGGTGTGAAAAAGCCTACATCCATGAATACAAGCTTAAACTACATCTGAGGAGAGAGCATCCTGGTCATATGTCTGATGAAAATGCTGAGCATGCCCTTAATACTGCTGACAATGAGATGGACGAAGCCAGTGATCAAGATGTCTATGCGGGAAAACGTGTGAATGGCAAAAGCCAGAAAACAAATAGGGCCAAGCCGAATTTGAAGTTCCCGCCTGCCAAAGTGCGCAAAGGCTCAACTCCATCTCAGGCCACTACGAACCCAATGAAAAAGCCATGGCCAGTCAAAGAAGTAGTTTATGAAGAAGATAGTGAAGAAACGGAAGAGGACCGTGACAATGTAGAGGATGGTTGGAGGTATGCCGGAAACAATGACGATGATGATGAAGAAACAGAAGATGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0032101 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:1900150 GO:1901000 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

349

Amino Acids

39.76

Weight (kDa)

5.87

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06634 AT4G06634 AT4G06634
fragaria_vesca	FvH4_5g28700 FvH4_5g28700 FvH4_5g28700 FvH4_5g28700
malus_domestica	MD08G1239600.v1.1
prunus_persica	Prupe.1G576100_v2.0.a1 Prupe.1G576100_v2.0.a1
pyrus_communis	pycom08g20780
rosa_chinensis	RchiOBHm_Chr7g0220861
rosa_laevigata	RLG00000002197
rosa_multiflora	Rmu_ssc0000286.1_g000009
rosa_roxburghii	Rroxscaffold_3G00238940
rosa_rugosa	Rorug07G0197500 Rorug07G0197600 Rorug07G0197700 Rorug07G0197800 Rorug07G0197900.1
rosa_samantha	Rh7AG338100 Rh7BG328800 Rh7CG356200 Rh7DG337000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	869
AccB1I	GGYRCC	1 cut(s)	121
AccB7I	CCANNNNNTGG	1 cut(s)	449
AccI	GTMKAC	1 cut(s)	542
AciI	CCGC	2 cut(s)	791, 854
AcoI	YGGCCR	1 cut(s)	920
AcsI	RAATTY	2 cut(s)	278, 841
AcuI	CTGAAG	2 cut(s)	171, 540
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	4 cut(s)	353, 449, 590, 641
AflIII	ACRYGT	1 cut(s)	799
AgsI	TTSAA	5 cut(s)	97, 294, 301, 385, 847
AjnI	CCWGG	2 cut(s)	375, 703
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	4 cut(s)	115, 171, 478, 676
AluI	AGCT	4 cut(s)	115, 171, 478, 676
Alw26I	GTCTC	1 cut(s)	235
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	3 cut(s)	831, 891, 920
ApeKI	GCWGC	1 cut(s)	168
ApoI	RAATTY	2 cut(s)	278, 841
ArsI	GACNNNNNNTTYG	2 cut(s)	234, 266
AspLEI	GCGC	1 cut(s)	870
AspS9I	GGNCC	3 cut(s)	393, 831, 970
AsuHPI	GGTGA	1 cut(s)	491
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	2 cut(s)	393, 970
BaeGI	GKGCMC	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	922
BanI	GGYRCC	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	3 cut(s)	754, 892, 983
BciT130I	CCWGG	2 cut(s)	377, 705
BclI	TGATCA	1 cut(s)	775
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	2 cut(s)	116, 1048
BfmI	CTRYAG	1 cut(s)	588
BisI	GCNGC	1 cut(s)	169
BlpI	GCTNAGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	377, 705
Bme18I	GGWCC	2 cut(s)	393, 970
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	3 cut(s)	393, 831, 970
BmiI	GGNNCC	2 cut(s)	123, 395
BmrFI	CCNGG	2 cut(s)	377, 705
BmsI	GCATC	3 cut(s)	190, 617, 709
BpiI	GAAGAC	1 cut(s)	194
Bpu1102I	GCTNAGC	1 cut(s)	729
BsaJI	CCNNGG	2 cut(s)	375, 917
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 559, 589
Bsc4I	CCNNNNNNNGG	4 cut(s)	353, 449, 590, 641
Bse1I	ACTGG	3 cut(s)	328, 771, 923
BseBI	CCWGG	2 cut(s)	377, 705
BseDI	CCNNGG	2 cut(s)	375, 917
BseGI	GGATG	4 cut(s)	535, 660, 700, 994
BseLI	CCNNNNNNNGG	4 cut(s)	353, 449, 590, 641
BseMII	CTCAG	3 cut(s)	680, 720, 902
BseNI	ACTGG	3 cut(s)	328, 771, 923
BseRI	GAGGAG	1 cut(s)	706
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	180
BshFI	GGCC	3 cut(s)	833, 893, 922
BshNI	GGYRCC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	1005
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	4 cut(s)	353, 449, 590, 641
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	379
BsmI	GAATGC	2 cut(s)	220, 368
BsnI	GGCC	3 cut(s)	833, 893, 922
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	616, 775
Bsp1720I	GCTNAGC	1 cut(s)	729
Bsp19I	CCATGG	1 cut(s)	917
BspACI	CCGC	2 cut(s)	791, 854
BspANI	GGCC	3 cut(s)	833, 893, 922
BspCNI	CTCAG	3 cut(s)	681, 721, 901
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	2 cut(s)	123, 395
BspMAI	CTGCAG	1 cut(s)	592
BspT107I	GGYRCC	1 cut(s)	121
BsrI	ACTGG	3 cut(s)	328, 771, 923
BssECI	CCNNGG	2 cut(s)	375, 917
BssMI	GATC	2 cut(s)	616, 775
BssNAI	GTATAC	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	917
Bst1107I	GTATAC	1 cut(s)	543
Bst2UI	CCWGG	2 cut(s)	377, 705
Bst4CI	ACNGT	6 cut(s)	31, 85, 246, 393, 547, 974
Bst6I	CTCTTC	1 cut(s)	960
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstC8I	GCNNGC	3 cut(s)	631, 735, 858
BstDEI	CTNAG	5 cut(s)	73, 537, 689, 729, 888
BstDSI	CCRYGG	1 cut(s)	917
BstENI	CCTNNNNNAGG	3 cut(s)	351, 588, 639
BstF5I	GGATG	4 cut(s)	535, 660, 700, 994
BstHHI	GCGC	1 cut(s)	870
BstKTI	GATC	2 cut(s)	619, 778
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	2 cut(s)	616, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 520, 734
BstNI	CCWGG	2 cut(s)	377, 705
BstNSI	RCATGY	1 cut(s)	737
BstSCI	CCNGG	2 cut(s)	375, 703
BstSFI	CTRYAG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	180
BstV2I	GAAGAC	1 cut(s)	194
BstZ17I	GTATAC	1 cut(s)	543
BsuRI	GGCC	3 cut(s)	833, 893, 922
BtgI	CCRYGG	1 cut(s)	917
BtsCI	GGATG	4 cut(s)	535, 660, 700, 994
BtsIMutI	CAGTG	1 cut(s)	778
Cac8I	GCNNGC	3 cut(s)	631, 735, 858
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	1 cut(s)	870
Cfr13I	GGNCC	3 cut(s)	393, 831, 970
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	8 cut(s)	233, 350, 400, 467, 503, 665, 734, 918
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	5 cut(s)	73, 537, 689, 729, 888
DpnI	GATC	2 cut(s)	618, 777
DpnII	GATC	2 cut(s)	616, 775
EaeI	YGGCCR	1 cut(s)	920
Eam1104I	CTCTTC	1 cut(s)	960
EarI	CTCTTC	1 cut(s)	960
Eco130I	CCWWGG	1 cut(s)	917
Eco47I	GGWCC	2 cut(s)	393, 970
Eco57I	CTGAAG	2 cut(s)	171, 540
Eco88I	CYCGRG	1 cut(s)	44
EcoNI	CCTNNNNNAGG	3 cut(s)	351, 588, 639
EcoRII	CCWGG	2 cut(s)	375, 703
EcoT14I	CCWWGG	1 cut(s)	917
ErhI	CCWWGG	1 cut(s)	917
FaeI	CATG	8 cut(s)	236, 353, 403, 470, 506, 668, 737, 921
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	8 cut(s)	232, 349, 399, 466, 502, 664, 733, 917
FauI	CCCGC	2 cut(s)	784, 861
FauNDI	CATATG	1 cut(s)	711
FbaI	TGATCA	1 cut(s)	775
FblI	GTMKAC	1 cut(s)	542
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	4 cut(s)	542, 647, 687, 1001
Fsp4HI	GCNGC	1 cut(s)	169
FspBI	CTAG	2 cut(s)	116, 1048
FspI	TGCGCA	1 cut(s)	869
GlaI	GCGC	1 cut(s)	869
GluI	GCNGC	1 cut(s)	169
HaeIII	GGCC	3 cut(s)	833, 893, 922
HapII	CCGG	1 cut(s)	1005
HhaI	GCGC	1 cut(s)	870
Hin1II	CATG	8 cut(s)	236, 353, 403, 470, 506, 668, 737, 921
Hin6I	GCGC	1 cut(s)	868
HinP1I	GCGC	1 cut(s)	868
HindIII	AAGCTT	2 cut(s)	476, 674
HpaII	CCGG	1 cut(s)	1005
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	1 cut(s)	543
Hpy188I	TCNGA	4 cut(s)	559, 616, 690, 718
Hpy188III	TCNNGA	3 cut(s)	44, 350, 779
Hpy8I	GTNNAC	1 cut(s)	543
HpyAV	CCTTC	5 cut(s)	170, 347, 564, 594, 635
HpyCH4III	ACNGT	6 cut(s)	31, 85, 246, 393, 547, 974
HpyCH4IV	ACGT	1 cut(s)	799
HpyCH4V	TGCA	5 cut(s)	168, 464, 514, 590, 608
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 520, 734
HpyF3I	CTNAG	5 cut(s)	73, 537, 689, 729, 888
HpySE526I	ACGT	1 cut(s)	799
Hsp92II	CATG	8 cut(s)	236, 353, 403, 470, 506, 668, 737, 921
HspAI	GCGC	1 cut(s)	868
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	2 cut(s)	616, 775
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	3 cut(s)	190, 617, 709
MaeI	CTAG	2 cut(s)	116, 1048
MaeII	ACGT	1 cut(s)	799
MaeIII	GTNAC	2 cut(s)	254, 974
MalI	GATC	2 cut(s)	618, 777
MboI	GATC	2 cut(s)	616, 775
MboII	GAAGA	8 cut(s)	199, 286, 956, 959, 968, 977, 1040, 1049
MhlI	GDGCHC	1 cut(s)	83
MlsI	TGGCCA	1 cut(s)	922
MluCI	AATT	2 cut(s)	278, 841
MluNI	TGGCCA	1 cut(s)	922
MmeI	TCCRAC	1 cut(s)	974
MnlI	CCTC	8 cut(s)	70, 207, 256, 357, 684, 961, 979, 990
Mox20I	TGGCCA	1 cut(s)	922
MscI	TGGCCA	1 cut(s)	922
MseI	TTAA	3 cut(s)	480, 678, 741
MslI	CAYNNNNRTG	1 cut(s)	231
Msp20I	TGGCCA	1 cut(s)	922
MspI	CCGG	1 cut(s)	1005
MspR9I	CCNGG	2 cut(s)	377, 705
Mva1269I	GAATGC	2 cut(s)	220, 368
MvaI	CCWGG	2 cut(s)	377, 705
MwoI	GCNNNNNNNGC	3 cut(s)	177, 520, 734
NcoI	CCATGG	1 cut(s)	917
NdeI	CATATG	1 cut(s)	711
NdeII	GATC	2 cut(s)	616, 775
NlaIII	CATG	8 cut(s)	236, 353, 403, 470, 506, 668, 737, 921
NlaIV	GGNNCC	2 cut(s)	123, 395
NmuCI	GTSAC	2 cut(s)	254, 974
NsbI	TGCGCA	1 cut(s)	869
NspI	RCATGY	1 cut(s)	737
PaeI	GCATGC	1 cut(s)	737
PagI	TCATGA	1 cut(s)	349
PctI	GAATGC	2 cut(s)	220, 368
PflMI	CCANNNNNTGG	1 cut(s)	449
PkrI	GCNGC	1 cut(s)	170
Psp6I	CCWGG	2 cut(s)	375, 703
PspGI	CCWGG	2 cut(s)	375, 703
PspN4I	GGNNCC	2 cut(s)	123, 395
PspPI	GGNCC	3 cut(s)	393, 831, 970
PstI	CTGCAG	1 cut(s)	592
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	480, 678, 741
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	2 cut(s)	616, 775
Sau96I	GGNCC	3 cut(s)	393, 831, 970
ScrFI	CCNGG	2 cut(s)	377, 705
SduI	GDGCHC	1 cut(s)	83
SfaNI	GCATC	3 cut(s)	190, 617, 709
SfcI	CTRYAG	1 cut(s)	588
SinI	GGWCC	2 cut(s)	393, 970
SmiMI	CAYNNNNRTG	1 cut(s)	231
SphI	GCATGC	1 cut(s)	737
Sse9I	AATT	2 cut(s)	278, 841
SsiI	CCGC	2 cut(s)	791, 854
SspMI	CTAG	2 cut(s)	116, 1048
StyD4I	CCNGG	2 cut(s)	375, 703
StyI	CCWWGG	1 cut(s)	917
TaaI	ACNGT	6 cut(s)	31, 85, 246, 393, 547, 974
TaiI	ACGT	1 cut(s)	802
TaqI	TCGA	1 cut(s)	619
TasI	AATT	2 cut(s)	278, 841
TatI	WGTACW	1 cut(s)	471
Tru1I	TTAA	3 cut(s)	480, 678, 741
Tru9I	TTAA	3 cut(s)	480, 678, 741
TscAI	CASTG	1 cut(s)	778
TseFI	GTSAC	2 cut(s)	254, 974
TseI	GCWGC	1 cut(s)	168
Tsp45I	GTSAC	2 cut(s)	254, 974
TspGWI	ACGGA	1 cut(s)	977
TspRI	CASTG	1 cut(s)	778
Van91I	CCANNNNNTGG	1 cut(s)	449
VpaK11BI	GGWCC	2 cut(s)	393, 970
XagI	CCTNNNNNAGG	3 cut(s)	351, 588, 639
XapI	RAATTY	2 cut(s)	278, 841
XceI	RCATGY	1 cut(s)	737
XmiI	GTMKAC	1 cut(s)	542
XspI	CTAG	2 cut(s)	116, 1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.