Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004401

Physical Location & Seq

Genomic Coordinates Reverse (-)

5646395 .. 5648868

Gene Structure 2474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G08870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTGGAAGATTGGGCAGAGAGGAGTTCCCTATTTCCAGAGACTCATTGCTGCGCCGTTCACGACCTTGCGGTCCTTGCCAACTTCTTTGGTCGAGACAGGGCAGAACCGTGTCATTGATGCTTCGTTAACTCTCATCCGTGAAAGGGCAAAACTCAAAGGAGAGTTAGTGCGACTCATAGGAGGAGCAAAAGCTACAACAGCTCTTCTTGGAGTACCACTTGGTCACAACTCTTCTTTTCTTGAAGGCCCAGCCTTGGCTCCTCCTCATGTAAGGGAAGCTATTTGGTGTGGTAGTACAAACTCCACCACTGAAGAAGGGAAGGAGCTAAAAGATCCACGTGTTCTAAGTGATGTTGGTGATATTCCGGTACAAGAGATTAGAGAAATGGGGGTTGATGATGATAGACTTATGAAAGTAGTAAGTGAATCTGTGAAGCTGGTGATGGAAGAGGAACCATTGCGCCCGCTGGTCATAGGTGGAGACCATTCCATATCTTATCCTGTTGTGAGAGCTGTTTCGGAGAAACTTGGAGGACCCGTGGATATTCTTCATCTTGATGCACATCCCGATATATATGACCGTTTTGAAGGCAATTATTACTCTCATGCATCTTCTTTTGCTCGTATCATGGAAGGTGGCTATGCGCGGCGGCTTTTACAGGTTGGGATCAGATCCATAAACAAAGAAGGACGGGAACAAGGCAAGAGGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCAAAAGATCGCCAAATGTTGGAAAACTTGAAACTAGGGGAAGGAGTGAAGGGCGTGTATATCTCGATCGATGTTGACTGTCTCGATCCGGGATTCGCGCACGGAGTGTCCCACTTCGAACCAGGAGGTCTTTCTTTCCGAGACGTCCTTAACATATTACACAACCTTCAGGGAGATTTGGTGGGGGCTGATGTTGTTGAGTACAATCCACAGCGTGATACCGCTGATGACATGACGGCAATGGTCGCGGCTAAGTTTGTTAGAGAGCTAGCCGCAAAAATGTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004053 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006560 GO:0006570 GO:0006576 GO:0006591 GO:0006595 GO:0006596 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008783 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009072 GO:0009308 GO:0009309 GO:0009445 GO:0009446 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0016054 GO:0016787 GO:0016810 GO:0016813 GO:0019752 GO:0033388 GO:0033389 GO:0034641 GO:0042401 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044271 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0050897 GO:0051704 GO:0051707 GO:0071704 GO:0097164 GO:0098542 GO:1901360 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko01230 ko05146 map00220 map00330 map01100 map01110 map01130 map01230 map05146

Pfam Domains

Protein Families

Arginase

Protein Analysis

344

Amino Acids

37.98

Weight (kDa)

5.9

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arginase	PF00491	67 - 338	7.3e-68	Arginase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08870 AT4G08870 AT4G08900
fragaria_vesca	FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450
malus_domestica	MD02G1206500.v1.1 MD02G1206600.v1.1 MD07G1119200.v1.1
prunus_persica	Prupe.2G142300_v2.0.a1 Prupe.2G142300_v2.0.a1
pyrus_communis	pycom07g10550
rosa_chinensis	RchiOBHm_Chr1g0349751 RchiOBHm_Chr1g0349761 RchiOBHm_Chr1g0349771
rosa_laevigata	RLG00000028523 RLG00000028524
rosa_multiflora	Rmu_sc0004624.1_g000004 Rmu_sc0004624.1_g000006 Rmu_sc0014735.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305350
rosa_rugosa	Rorug01G0205900
rosa_samantha	Rh1AG223000 Rh1AG223100 Rh1BG189200 Rh1CG207800 Rh1CG207900 Rh1DG218100
rosa_wichuraiana	Rw1G019010 Rw1G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	70
AatII	GACGTC	1 cut(s)	891
AccB7I	CCANNNNNTGG	1 cut(s)	763
AccII	CGCG	3 cut(s)	649, 842, 992
AciI	CCGC	7 cut(s)	70, 467, 649, 652, 966, 992, 1017
AclWI	GGATC	4 cut(s)	329, 669, 677, 824
AcuI	CTGAAG	2 cut(s)	333, 896
AcvI	CACGTG	1 cut(s)	341
AcyI	GRCGYC	1 cut(s)	888
AdeI	CACNNNGTG	2 cut(s)	850, 959
AfaI	GTAC	4 cut(s)	216, 298, 372, 947
AfiI	CCNNNNNNNGG	3 cut(s)	145, 256, 763
AflIII	ACRYGT	1 cut(s)	340
AgsI	TTSAA	3 cut(s)	245, 590, 775
AjnI	CCWGG	1 cut(s)	865
AluBI	AGCT	7 cut(s)	194, 203, 281, 328, 439, 515, 1012
AluI	AGCT	7 cut(s)	194, 203, 281, 328, 439, 515, 1012
Alw26I	GTCTC	5 cut(s)	34, 89, 477, 830, 879
AlwI	GGATC	4 cut(s)	329, 669, 677, 824
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	50
AspLEI	GCGC	4 cut(s)	55, 465, 649, 844
AspS9I	GGNCC	3 cut(s)	72, 248, 536
AsuC2I	CCSGG	1 cut(s)	834
AsuHPI	GGTGA	2 cut(s)	371, 454
AsuII	TTCGAA	1 cut(s)	861
AsuNHI	GCTAGC	1 cut(s)	1012
AvaII	GGWCC	2 cut(s)	72, 536
BbrPI	CACGTG	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	439
BceAI	ACGGC	2 cut(s)	40, 996
BciT130I	CCWGG	1 cut(s)	867
BcnI	CCSGG	1 cut(s)	834
BcoDI	GTCTC	5 cut(s)	34, 89, 477, 830, 879
BfaI	CTAG	2 cut(s)	779, 1013
BisI	GCNGC	5 cut(s)	51, 650, 653, 993, 1017
BlsI	GCNGC	5 cut(s)	52, 651, 654, 994, 1018
Bme1390I	CCNGG	2 cut(s)	834, 867
Bme18I	GGWCC	2 cut(s)	72, 536
BmgT120I	GGNCC	3 cut(s)	72, 248, 536
BmiI	GGNNCC	3 cut(s)	261, 456, 538
BmrFI	CCNGG	2 cut(s)	834, 867
BmsI	GCATC	4 cut(s)	109, 550, 620, 723
BmtI	GCTAGC	1 cut(s)	1016
Bpu14I	TTCGAA	1 cut(s)	861
BpuMI	CCSGG	1 cut(s)	834
Bsa29I	ATCGAT	1 cut(s)	813
BsaAI	YACGTR	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	888
BsaI	GGTCTC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	255, 540
BsaWI	WCCGGW	1 cut(s)	367
BsaXI	ACNNNNNCTCC	6 cut(s)	153, 183, 525, 555, 909, 939
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 256, 763
Bse3DI	GCAATG	3 cut(s)	45, 458, 990
Bse8I	GATNNNNATC	1 cut(s)	564
BseBI	CCWGG	1 cut(s)	867
BseCI	ATCGAT	1 cut(s)	813
BseDI	CCNNGG	2 cut(s)	255, 540
BseGI	GGATG	2 cut(s)	135, 565
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	3 cut(s)	145, 256, 763
BseMI	GCAATG	3 cut(s)	45, 458, 990
BseRI	GAGGAG	4 cut(s)	36, 198, 252, 255
BseXI	GCAGC	1 cut(s)	37
BseYI	CCCAGC	1 cut(s)	250
Bsh1236I	CGCG	3 cut(s)	649, 842, 992
Bsh1285I	CGRYCG	1 cut(s)	813
BshFI	GGCC	1 cut(s)	249
BshVI	ATCGAT	1 cut(s)	813
BsiEI	CGRYCG	1 cut(s)	813
BsiSI	CCGG	2 cut(s)	368, 833
BslFI	GGGAC	1 cut(s)	838
BslI	CCNNNNNNNGG	3 cut(s)	145, 256, 763
BsmAI	GTCTC	5 cut(s)	34, 89, 477, 830, 879
BsmBI	CGTCTC	1 cut(s)	879
BsmFI	GGGAC	1 cut(s)	838
BsnI	GGCC	1 cut(s)	249
Bso31I	GGTCTC	1 cut(s)	477
Bsp119I	TTCGAA	1 cut(s)	861
Bsp143I	GATC	6 cut(s)	334, 669, 674, 751, 810, 829
BspACI	CCGC	7 cut(s)	70, 467, 649, 652, 966, 992, 1017
BspANI	GGCC	1 cut(s)	249
BspDI	ATCGAT	1 cut(s)	813
BspFNI	CGCG	3 cut(s)	649, 842, 992
BspLI	GGNNCC	3 cut(s)	261, 456, 538
BspOI	GCTAGC	1 cut(s)	1016
BspPI	GGATC	4 cut(s)	329, 669, 677, 824
BspQI	GCTCTTC	1 cut(s)	210
BspT104I	TTCGAA	1 cut(s)	861
BspTNI	GGTCTC	1 cut(s)	477
BsrDI	GCAATG	3 cut(s)	45, 458, 990
BssECI	CCNNGG	2 cut(s)	255, 540
BssMI	GATC	6 cut(s)	334, 669, 674, 751, 810, 829
BssNI	GRCGYC	1 cut(s)	888
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	867
Bst4CI	ACNGT	4 cut(s)	110, 584, 726, 824
Bst6I	CTCTTC	3 cut(s)	210, 238, 444
BstACI	GRCGYC	1 cut(s)	888
BstBAI	YACGTR	1 cut(s)	341
BstBI	TTCGAA	1 cut(s)	861
BstC8I	GCNNGC	2 cut(s)	467, 1014
BstDEI	CTNAG	2 cut(s)	347, 996
BstDSI	CCRYGG	1 cut(s)	540
BstF5I	GGATG	2 cut(s)	135, 565
BstFNI	CGCG	3 cut(s)	649, 842, 992
BstHHI	GCGC	4 cut(s)	55, 465, 649, 844
BstKTI	GATC	6 cut(s)	337, 672, 677, 754, 813, 832
BstMAI	GTCTC	5 cut(s)	34, 89, 477, 830, 879
BstMBI	GATC	6 cut(s)	334, 669, 674, 751, 810, 829
BstMCI	CGRYCG	1 cut(s)	813
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 200, 989
BstNI	CCWGG	1 cut(s)	867
BstSCI	CCNGG	2 cut(s)	832, 865
BstUI	CGCG	3 cut(s)	649, 842, 992
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	2 cut(s)	334, 674
BstYI	RGATCY	2 cut(s)	334, 674
Bsu15I	ATCGAT	1 cut(s)	813
BsuRI	GGCC	1 cut(s)	249
BsuTUI	ATCGAT	1 cut(s)	813
BtgI	CCRYGG	1 cut(s)	540
BtsCI	GGATG	2 cut(s)	135, 565
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	2 cut(s)	467, 1014
CfoI	GCGC	4 cut(s)	55, 465, 649, 844
Cfr13I	GGNCC	3 cut(s)	72, 248, 536
ClaI	ATCGAT	1 cut(s)	813
Csp6I	GTAC	4 cut(s)	215, 297, 371, 946
CviAII	CATG	4 cut(s)	269, 608, 631, 976
CviQI	GTAC	4 cut(s)	215, 297, 371, 946
DdeI	CTNAG	2 cut(s)	347, 996
DpnI	GATC	6 cut(s)	336, 671, 676, 753, 812, 831
DpnII	GATC	6 cut(s)	334, 669, 674, 751, 810, 829
DraIII	CACNNNGTG	2 cut(s)	850, 959
DrdI	GACNNNNNNGTC	1 cut(s)	70
DseDI	GACNNNNNNGTC	1 cut(s)	70
Eam1104I	CTCTTC	3 cut(s)	210, 238, 444
EarI	CTCTTC	3 cut(s)	210, 238, 444
Eco130I	CCWWGG	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	477
Eco47I	GGWCC	2 cut(s)	72, 536
Eco57I	CTGAAG	2 cut(s)	333, 896
Eco72I	CACGTG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	865
EcoT14I	CCWWGG	1 cut(s)	255
EcoT22I	ATGCAT	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	879
FaeI	CATG	4 cut(s)	272, 611, 634, 979
FaqI	GGGAC	1 cut(s)	838
FatI	CATG	4 cut(s)	268, 607, 630, 975
FauI	CCCGC	1 cut(s)	474
Fnu4HI	GCNGC	5 cut(s)	51, 650, 653, 993, 1017
FokI	GGATG	2 cut(s)	122, 552
Fsp4HI	GCNGC	5 cut(s)	51, 650, 653, 993, 1017
FspBI	CTAG	2 cut(s)	779, 1013
GlaI	GCGC	4 cut(s)	54, 464, 648, 843
GluI	GCNGC	5 cut(s)	51, 650, 653, 993, 1017
GsaI	CCCAGC	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	2 cut(s)	368, 833
HhaI	GCGC	4 cut(s)	55, 465, 649, 844
Hin1I	GRCGYC	1 cut(s)	888
Hin1II	CATG	4 cut(s)	272, 611, 634, 979
Hin6I	GCGC	4 cut(s)	53, 463, 647, 842
HinP1I	GCGC	4 cut(s)	53, 463, 647, 842
HincII	GTYRAC	2 cut(s)	129, 820
HindII	GTYRAC	2 cut(s)	129, 820
HinfI	GANTC	4 cut(s)	42, 174, 428, 837
HpaI	GTTAAC	1 cut(s)	129
HpaII	CCGG	2 cut(s)	368, 833
HphI	GGTGA	2 cut(s)	371, 454
Hpy166II	GTNNAC	3 cut(s)	60, 129, 820
Hpy188I	TCNGA	3 cut(s)	523, 674, 884
Hpy188III	TCNNGA	8 cut(s)	37, 61, 94, 242, 557, 569, 808, 827
Hpy8I	GTNNAC	3 cut(s)	60, 129, 820
HpyCH4III	ACNGT	4 cut(s)	110, 584, 726, 824
HpyCH4IV	ACGT	2 cut(s)	340, 888
HpyCH4V	TGCA	2 cut(s)	563, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 200, 989
HpyF3I	CTNAG	2 cut(s)	347, 996
HpySE526I	ACGT	2 cut(s)	340, 888
Hsp92I	GRCGYC	1 cut(s)	888
Hsp92II	CATG	4 cut(s)	272, 611, 634, 979
HspAI	GCGC	4 cut(s)	53, 463, 647, 842
KspAI	GTTAAC	1 cut(s)	129
Kzo9I	GATC	6 cut(s)	334, 669, 674, 751, 810, 829
LguI	GCTCTTC	1 cut(s)	210
LmnI	GCTCC	3 cut(s)	185, 265, 325
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	4 cut(s)	109, 550, 620, 723
MaeI	CTAG	2 cut(s)	779, 1013
MaeII	ACGT	2 cut(s)	340, 888
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	6 cut(s)	336, 671, 676, 753, 812, 831
MboI	GATC	6 cut(s)	334, 669, 674, 751, 810, 829
MboII	GAAGA	7 cut(s)	19, 197, 225, 326, 461, 542, 606
MflI	RGATCY	2 cut(s)	334, 674
MluCI	AATT	1 cut(s)	595
MlyI	GAGTC	2 cut(s)	36, 168
MmeI	TCCRAC	1 cut(s)	744
MnlI	CCTC	8 cut(s)	14, 176, 273, 276, 445, 527, 702, 863
Mph1103I	ATGCAT	1 cut(s)	613
MseI	TTAA	2 cut(s)	128, 894
MslI	CAYNNNNRTG	1 cut(s)	558
MspA1I	CMGCKG	2 cut(s)	469, 968
MspI	CCGG	2 cut(s)	368, 833
MspR9I	CCNGG	2 cut(s)	834, 867
MvaI	CCWGG	1 cut(s)	867
MvnI	CGCG	3 cut(s)	649, 842, 992
MwoI	GCNNNNNNNGC	3 cut(s)	76, 200, 989
NciI	CCSGG	1 cut(s)	834
NdeII	GATC	6 cut(s)	334, 669, 674, 751, 810, 829
NheI	GCTAGC	1 cut(s)	1012
NlaIII	CATG	4 cut(s)	272, 611, 634, 979
NlaIV	GGNNCC	3 cut(s)	261, 456, 538
NmuCI	GTSAC	1 cut(s)	224
NsiI	ATGCAT	1 cut(s)	613
NspV	TTCGAA	1 cut(s)	861
PciSI	GCTCTTC	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	428, 837
PflMI	CCANNNNNTGG	1 cut(s)	763
PfoI	TCCNGGA	1 cut(s)	832
PkrI	GCNGC	5 cut(s)	52, 651, 654, 994, 1018
Ple19I	CGATCG	1 cut(s)	813
PleI	GAGTC	2 cut(s)	36, 168
PmaCI	CACGTG	1 cut(s)	341
PmlI	CACGTG	1 cut(s)	341
PpsI	GAGTC	2 cut(s)	36, 168
Ppu21I	YACGTR	1 cut(s)	341
PpuMI	RGGWCCY	1 cut(s)	536
Psp5II	RGGWCCY	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	865
PspCI	CACGTG	1 cut(s)	341
PspFI	CCCAGC	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	865
PspN4I	GGNNCC	3 cut(s)	261, 456, 538
PspPI	GGNCC	3 cut(s)	72, 248, 536
PspPPI	RGGWCCY	1 cut(s)	536
PsuI	RGATCY	2 cut(s)	334, 674
PvuI	CGATCG	1 cut(s)	813
RsaI	GTAC	4 cut(s)	216, 298, 372, 947
RsaNI	GTAC	4 cut(s)	215, 297, 371, 946
RseI	CAYNNNNRTG	1 cut(s)	558
SapI	GCTCTTC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	128, 894
SatI	GCNGC	5 cut(s)	51, 650, 653, 993, 1017
Sau3AI	GATC	6 cut(s)	334, 669, 674, 751, 810, 829
Sau96I	GGNCC	3 cut(s)	72, 248, 536
SchI	GAGTC	2 cut(s)	36, 168
ScrFI	CCNGG	2 cut(s)	834, 867
SfaNI	GCATC	4 cut(s)	109, 550, 620, 723
SfuI	TTCGAA	1 cut(s)	861
SinI	GGWCC	2 cut(s)	72, 536
SmiMI	CAYNNNNRTG	1 cut(s)	558
Sse9I	AATT	1 cut(s)	595
SsiI	CCGC	7 cut(s)	70, 467, 649, 652, 966, 992, 1017
SspMI	CTAG	2 cut(s)	779, 1013
StyD4I	CCNGG	2 cut(s)	832, 865
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	4 cut(s)	110, 584, 726, 824
TaiI	ACGT	2 cut(s)	343, 891
TaqI	TCGA	5 cut(s)	93, 809, 813, 828, 861
TasI	AATT	1 cut(s)	595
TatI	WGTACW	2 cut(s)	296, 945
TauI	GCSGC	4 cut(s)	652, 655, 995, 1019
TfiI	GAWTC	2 cut(s)	428, 837
Tru1I	TTAA	2 cut(s)	128, 894
Tru9I	TTAA	2 cut(s)	128, 894
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	428, 542
TspGWI	ACGGA	2 cut(s)	128, 861
TspRI	CASTG	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	763
VpaK11BI	GGWCC	2 cut(s)	72, 536
XspI	CTAG	2 cut(s)	779, 1013
ZraI	GACGTC	1 cut(s)	889
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.