Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004401

Physical Location & Seq

Genomic Coordinates Forward (+)

5703311 .. 5705439

Gene Structure 2129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G08900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTCGAGGATTATTGGTAGAAAAGGGATTAACTATATCCATAGACTAAATTCTGCGTCGTTCACGAGCGTATCTGCTTCTTCAATCGAGAAAGGGCAAAATCGCGTGATTGATGCTTCGTTAACTCTTATTCGTGAAAGGGCAAAACTCAAAGGAGAGTTAGTGCGTCTTTTAGGTGGAGCTAAAGCTTCAACATCTCTTCTTGGTGTACCACTTGGTCACAACTCTTCTTTTCTTCAAGGTCCTGCTTTTGCTCCTCCTCGTATTCGAGAAGCTATTTGGTGTGGTAGCACAAACTCTGCCACTGAAGAAGGGAAGGAGTTGAAGGATCCACGGGTTCTAACTGATGTTGGGGATGTTCCGGTACAAGAGATTAGAGATTGTGGGGTTGATGATGATAGACTGATGAATGTCATAAGTGAATCTGTGAAGTTGGTGATGGAAGAGGAACCATTGCGTCCGTTGGTCTTAGGTGGAGACCATTCCATATCTTATCCTGTTGTGAGAGCGGTTTCTGAGAAGCTTGGAGGGCCTGTGGACATTCTTCATCTTGATGCACATCCGGATATATATGACTGTTTTGAAGGAAATAAGTACTCTCATGCATCTTCTTTTGCTCGTATCATGGAAGGTGGCTATGCGCGTAGGCTTTTACAGGTTGGGATCAGATCGATAAACCAGGAAGGACGGGAACAAGGCAAGAGGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCGAAAGATCGCCCAATGTTGGAAAATCTGAAATTAGGGGAAGGAGTGAAGGGGGTATACATCTCGATAGACGTTGACTGTCTCGATCCGGCATTTGCACCTGGAGTGTCGCATATCGAACCAGGAGGTCTCTCTTTCCGTGACGTCCTTAACATCTTACACAACCTTCAGGCAGATGTTGTCGGGGCTGACGTTGTCGAGTTCAACCCGCAGCGTGATACTGTTGACGGCATGACAGCAATGGTTGCAGCTAAGCTTGTTAGAGAATTAGCTGCGAAAATCTCGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004053 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006560 GO:0006570 GO:0006576 GO:0006591 GO:0006595 GO:0006596 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008783 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009072 GO:0009308 GO:0009309 GO:0009445 GO:0009446 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0016054 GO:0016787 GO:0016810 GO:0016813 GO:0019752 GO:0033388 GO:0033389 GO:0034641 GO:0042401 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044271 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0050897 GO:0051704 GO:0051707 GO:0071704 GO:0097164 GO:0098542 GO:1901360 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko01230 ko05146 map00220 map00330 map01100 map01110 map01130 map01230 map05146

Pfam Domains

Protein Families

Arginase

Protein Analysis

342

Amino Acids

37.34

Weight (kDa)

6.11

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arginase	PF00491	65 - 336	8.7e-72	Arginase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08870 AT4G08870 AT4G08900
fragaria_vesca	FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450
malus_domestica	MD02G1206500.v1.1 MD02G1206600.v1.1 MD07G1119200.v1.1
prunus_persica	Prupe.2G142300_v2.0.a1 Prupe.2G142300_v2.0.a1
pyrus_communis	pycom07g10550
rosa_chinensis	RchiOBHm_Chr1g0349751 RchiOBHm_Chr1g0349761 RchiOBHm_Chr1g0349771
rosa_laevigata	RLG00000028523 RLG00000028524
rosa_multiflora	Rmu_sc0004624.1_g000004 Rmu_sc0004624.1_g000006 Rmu_sc0014735.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305350
rosa_rugosa	Rorug01G0205900
rosa_samantha	Rh1AG223000 Rh1AG223100 Rh1BG189200 Rh1CG207800 Rh1CG207900 Rh1DG218100
rosa_wichuraiana	Rw1G019010 Rw1G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	885
AccBSI	CCGCTC	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	795
AccII	CGCG	2 cut(s)	105, 643
AccIII	TCCGGA	1 cut(s)	562
AciI	CCGC	2 cut(s)	509, 947
AclWI	GGATC	4 cut(s)	323, 336, 671, 818
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	2 cut(s)	327, 890
AcyI	GRCGYC	1 cut(s)	882
AfaI	GTAC	3 cut(s)	210, 366, 596
AfiI	CCNNNNNNNGG	1 cut(s)	757
AgsI	TTSAA	6 cut(s)	84, 192, 239, 325, 584, 943
AjnI	CCWGG	3 cut(s)	678, 838, 859
AluBI	AGCT	7 cut(s)	182, 188, 275, 523, 989, 994, 1010
AluI	AGCT	7 cut(s)	182, 188, 275, 523, 989, 994, 1010
Alw26I	GTCTC	3 cut(s)	471, 824, 872
AlwI	GGATC	4 cut(s)	323, 336, 671, 818
Aor13HI	TCCGGA	1 cut(s)	562
AoxI	GGCC	1 cut(s)	530
ApeKI	GCWGC	3 cut(s)	949, 986, 1010
ApoI	RAATTY	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	643
AspS9I	GGNCC	2 cut(s)	242, 530
AsuHPI	GGTGA	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	242
BaeI	ACNNNNGTAYC	2 cut(s)	54, 87
BamHI	GGATCC	1 cut(s)	328
BarI	GAAGNNNNNNTAC	2 cut(s)	779, 811
BauI	CACGAG	1 cut(s)	64
BbvI	GCAGC	3 cut(s)	961, 997, 998
BccI	CCATC	1 cut(s)	433
BceAI	ACGGC	1 cut(s)	982
BciT130I	CCWGG	3 cut(s)	680, 840, 861
BcoDI	GTCTC	3 cut(s)	471, 824, 872
BisI	GCNGC	3 cut(s)	950, 987, 1011
BlpI	GCTNAGC	1 cut(s)	990
BlsI	GCNGC	3 cut(s)	951, 988, 1012
BmcAI	AGTACT	1 cut(s)	596
Bme1390I	CCNGG	3 cut(s)	680, 840, 861
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	242, 530
BmiI	GGNNCC	2 cut(s)	330, 450
BmrFI	CCNGG	3 cut(s)	680, 840, 861
BmsI	GCATC	4 cut(s)	103, 544, 614, 717
BpmI	CTGGAG	1 cut(s)	861
Bpu1102I	GCTNAGC	1 cut(s)	990
Bsa29I	ATCGAT	1 cut(s)	671
BsaBI	GATNNNNATC	1 cut(s)	558
BsaHI	GRCGYC	1 cut(s)	882
BsaI	GGTCTC	2 cut(s)	471, 872
BsaJI	CCNNGG	1 cut(s)	332
BsaWI	WCCGGW	2 cut(s)	361, 562
BsaXI	ACNNNNNCTCC	4 cut(s)	147, 177, 519, 549
Bsc4I	CCNNNNNNNGG	1 cut(s)	757
Bse3DI	GCAATG	2 cut(s)	452, 984
Bse8I	GATNNNNATC	1 cut(s)	558
BseAI	TCCGGA	1 cut(s)	562
BseBI	CCWGG	3 cut(s)	680, 840, 861
BseCI	ATCGAT	1 cut(s)	671
BseDI	CCNNGG	1 cut(s)	332
BseGI	GGATG	2 cut(s)	361, 559
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	1 cut(s)	757
BseMI	GCAATG	2 cut(s)	452, 984
BseMII	CTCAG	1 cut(s)	507
BseRI	GAGGAG	2 cut(s)	246, 249
BseXI	GCAGC	3 cut(s)	961, 997, 998
Bsh1236I	CGCG	2 cut(s)	105, 643
BshFI	GGCC	1 cut(s)	532
BshVI	ATCGAT	1 cut(s)	671
BsiSI	CCGG	3 cut(s)	362, 563, 827
BslI	CCNNNNNNNGG	1 cut(s)	757
BsmAI	GTCTC	3 cut(s)	471, 824, 872
BsnI	GGCC	1 cut(s)	532
Bso31I	GGTCTC	2 cut(s)	471, 872
Bsp13I	TCCGGA	1 cut(s)	562
Bsp143I	GATC	5 cut(s)	328, 663, 668, 745, 823
Bsp1720I	GCTNAGC	1 cut(s)	990
BspACI	CCGC	2 cut(s)	509, 947
BspANI	GGCC	1 cut(s)	532
BspCNI	CTCAG	1 cut(s)	508
BspDI	ATCGAT	1 cut(s)	671
BspEI	TCCGGA	1 cut(s)	562
BspFNI	CGCG	2 cut(s)	105, 643
BspLI	GGNNCC	2 cut(s)	330, 450
BspPI	GGATC	4 cut(s)	323, 336, 671, 818
BspTNI	GGTCTC	2 cut(s)	471, 872
BsrBI	CCGCTC	1 cut(s)	509
BsrDI	GCAATG	2 cut(s)	452, 984
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	5 cut(s)	328, 663, 668, 745, 823
BssNAI	GTATAC	1 cut(s)	796
BssNI	GRCGYC	1 cut(s)	882
BssSI	CACGAG	1 cut(s)	64
Bst1107I	GTATAC	1 cut(s)	796
Bst2BI	CACGAG	1 cut(s)	64
Bst2UI	CCWGG	3 cut(s)	680, 840, 861
Bst4CI	ACNGT	4 cut(s)	578, 720, 818, 961
Bst6I	CTCTTC	3 cut(s)	204, 232, 438
BstACI	GRCGYC	1 cut(s)	882
BstAPI	GCANNNNNTGC	1 cut(s)	983
BstDEI	CTNAG	3 cut(s)	469, 516, 990
BstDSI	CCRYGG	1 cut(s)	332
BstF5I	GGATG	2 cut(s)	361, 559
BstFNI	CGCG	2 cut(s)	105, 643
BstHHI	GCGC	1 cut(s)	643
BstKTI	GATC	5 cut(s)	331, 666, 671, 748, 826
BstMAI	GTCTC	3 cut(s)	471, 824, 872
BstMBI	GATC	5 cut(s)	328, 663, 668, 745, 823
BstMWI	GCNNNNNNNGC	2 cut(s)	529, 983
BstNI	CCWGG	3 cut(s)	680, 840, 861
BstSCI	CCNGG	3 cut(s)	678, 838, 859
BstUI	CGCG	2 cut(s)	105, 643
BstV1I	GCAGC	3 cut(s)	961, 997, 998
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BstZ17I	GTATAC	1 cut(s)	796
Bsu15I	ATCGAT	1 cut(s)	671
BsuRI	GGCC	1 cut(s)	532
BsuTUI	ATCGAT	1 cut(s)	671
BtgI	CCRYGG	1 cut(s)	332
BtsCI	GGATG	2 cut(s)	361, 559
BtsIMutI	CAGTG	1 cut(s)	303
CfoI	GCGC	1 cut(s)	643
Cfr13I	GGNCC	2 cut(s)	242, 530
ClaI	ATCGAT	1 cut(s)	671
CseI	GACGC	3 cut(s)	45, 155, 446
Csp6I	GTAC	3 cut(s)	209, 365, 595
CviAII	CATG	3 cut(s)	602, 625, 970
CviQI	GTAC	3 cut(s)	209, 365, 595
DdeI	CTNAG	3 cut(s)	469, 516, 990
DpnI	GATC	5 cut(s)	330, 665, 670, 747, 825
DpnII	GATC	5 cut(s)	328, 663, 668, 745, 823
Eam1104I	CTCTTC	3 cut(s)	204, 232, 438
EarI	CTCTTC	3 cut(s)	204, 232, 438
Eco31I	GGTCTC	2 cut(s)	471, 872
Eco47I	GGWCC	1 cut(s)	242
Eco57I	CTGAAG	2 cut(s)	327, 890
EcoO109I	RGGNCCY	2 cut(s)	242, 530
EcoRII	CCWGG	3 cut(s)	678, 838, 859
EcoT22I	ATGCAT	1 cut(s)	607
FaeI	CATG	3 cut(s)	605, 628, 973
FatI	CATG	3 cut(s)	601, 624, 969
FauI	CCCGC	1 cut(s)	954
FblI	GTMKAC	1 cut(s)	795
Fnu4HI	GCNGC	3 cut(s)	950, 987, 1011
FokI	GGATG	2 cut(s)	368, 546
Fsp4HI	GCNGC	3 cut(s)	950, 987, 1011
GlaI	GCGC	1 cut(s)	642
GluI	GCNGC	3 cut(s)	950, 987, 1011
GsuI	CTGGAG	1 cut(s)	861
HaeIII	GGCC	1 cut(s)	532
HapII	CCGG	3 cut(s)	362, 563, 827
HgaI	GACGC	3 cut(s)	45, 155, 446
HhaI	GCGC	1 cut(s)	643
Hin1I	GRCGYC	1 cut(s)	882
Hin1II	CATG	3 cut(s)	605, 628, 973
Hin6I	GCGC	1 cut(s)	641
HinP1I	GCGC	1 cut(s)	641
HincII	GTYRAC	3 cut(s)	123, 814, 964
HindII	GTYRAC	3 cut(s)	123, 814, 964
HindIII	AAGCTT	3 cut(s)	186, 521, 992
HinfI	GANTC	1 cut(s)	422
HpaI	GTTAAC	1 cut(s)	123
HpaII	CCGG	3 cut(s)	362, 563, 827
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	7 cut(s)	63, 123, 209, 538, 796, 814, 964
Hpy188I	TCNGA	3 cut(s)	517, 668, 768
Hpy8I	GTNNAC	7 cut(s)	63, 123, 209, 538, 796, 814, 964
Hpy99I	CGWCG	1 cut(s)	61
HpyCH4III	ACNGT	4 cut(s)	578, 720, 818, 961
HpyCH4IV	ACGT	3 cut(s)	810, 882, 930
HpyCH4V	TGCA	4 cut(s)	557, 605, 836, 986
HpyF10VI	GCNNNNNNNGC	2 cut(s)	529, 983
HpyF3I	CTNAG	3 cut(s)	469, 516, 990
HpySE526I	ACGT	3 cut(s)	810, 882, 930
Hsp92I	GRCGYC	1 cut(s)	882
Hsp92II	CATG	3 cut(s)	605, 628, 973
HspAI	GCGC	1 cut(s)	641
Kpn2I	TCCGGA	1 cut(s)	562
KspAI	GTTAAC	1 cut(s)	123
Kzo9I	GATC	5 cut(s)	328, 663, 668, 745, 823
LmnI	GCTCC	2 cut(s)	179, 259
Lsp1109I	GCAGC	3 cut(s)	961, 997, 998
LweI	GCATC	4 cut(s)	103, 544, 614, 717
MaeII	ACGT	3 cut(s)	810, 882, 930
MaeIII	GTNAC	2 cut(s)	218, 878
MalI	GATC	5 cut(s)	330, 665, 670, 747, 825
MbiI	CCGCTC	1 cut(s)	509
MboI	GATC	5 cut(s)	328, 663, 668, 745, 823
MboII	GAAGA	8 cut(s)	72, 191, 219, 227, 320, 455, 536, 600
MflI	RGATCY	1 cut(s)	328
MluCI	AATT	3 cut(s)	49, 770, 1004
MmeI	TCCRAC	1 cut(s)	738
MnlI	CCTC	6 cut(s)	267, 270, 439, 521, 696, 857
Mph1103I	ATGCAT	1 cut(s)	607
MroI	TCCGGA	1 cut(s)	562
MseI	TTAA	3 cut(s)	30, 122, 888
MslI	CAYNNNNRTG	1 cut(s)	552
MspI	CCGG	3 cut(s)	362, 563, 827
MspR9I	CCNGG	3 cut(s)	680, 840, 861
MvaI	CCWGG	3 cut(s)	680, 840, 861
MvnI	CGCG	2 cut(s)	105, 643
MwoI	GCNNNNNNNGC	2 cut(s)	529, 983
NdeII	GATC	5 cut(s)	328, 663, 668, 745, 823
NlaIII	CATG	3 cut(s)	605, 628, 973
NlaIV	GGNNCC	2 cut(s)	330, 450
NmuCI	GTSAC	2 cut(s)	218, 878
NsiI	ATGCAT	1 cut(s)	607
PcsI	WCGNNNNNNNCGW	1 cut(s)	927
PfeI	GAWTC	1 cut(s)	422
PflFI	GACNNNGTC	1 cut(s)	932
PkrI	GCNGC	3 cut(s)	951, 988, 1012
PpuMI	RGGWCCY	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	242
Psp6I	CCWGG	3 cut(s)	678, 838, 859
PspGI	CCWGG	3 cut(s)	678, 838, 859
PspN4I	GGNNCC	2 cut(s)	330, 450
PspPI	GGNCC	2 cut(s)	242, 530
PspPPI	RGGWCCY	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	328
PsyI	GACNNNGTC	1 cut(s)	932
RsaI	GTAC	3 cut(s)	210, 366, 596
RsaNI	GTAC	3 cut(s)	209, 365, 595
RseI	CAYNNNNRTG	1 cut(s)	552
SaqAI	TTAA	3 cut(s)	30, 122, 888
SatI	GCNGC	3 cut(s)	950, 987, 1011
Sau3AI	GATC	5 cut(s)	328, 663, 668, 745, 823
Sau96I	GGNCC	2 cut(s)	242, 530
ScaI	AGTACT	1 cut(s)	596
ScrFI	CCNGG	3 cut(s)	680, 840, 861
SfaNI	GCATC	4 cut(s)	103, 544, 614, 717
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	552
Sse9I	AATT	3 cut(s)	49, 770, 1004
SsiI	CCGC	2 cut(s)	509, 947
StyD4I	CCNGG	3 cut(s)	678, 838, 859
TaaI	ACNGT	4 cut(s)	578, 720, 818, 961
TaiI	ACGT	3 cut(s)	813, 885, 933
TasI	AATT	3 cut(s)	49, 770, 1004
TatI	WGTACW	1 cut(s)	594
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	3 cut(s)	30, 122, 888
Tru9I	TTAA	3 cut(s)	30, 122, 888
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	218, 878
TseI	GCWGC	3 cut(s)	949, 986, 1010
Tsp45I	GTSAC	2 cut(s)	218, 878
TspDTI	ATGAA	2 cut(s)	422, 536
TspGWI	ACGGA	2 cut(s)	450, 866
TspRI	CASTG	1 cut(s)	310
Tth111I	GACNNNGTC	1 cut(s)	932
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	795
ZraI	GACGTC	1 cut(s)	883
ZrmI	AGTACT	1 cut(s)	596
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.