Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004401

Physical Location & Seq

Genomic Coordinates Forward (+)

20840424 .. 20842448

Gene Structure 2025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1206600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGAACAGGATCCACTGCGCCCATTAGTGTTAGGTGGTGATCACTCAATTTCTTATCCTGTTGTAAGAGCTGTCTCTGAGAAGCTTGGGGGACCTGTGGATATTCTTCATCTTGATGCCCATCCTGATATCTATTATGCCTTTGAAGGTAATAAATATTCACATGCATCTTCTTTTGCTCGAATTATGGAAGGGGGTTATGCTCGGCGACTATTGCAGGTCCATATGACAAAGTTGGCAAAAAAGTGCAATATGGAGCATTTTGAGGCAGTTTTGGACATCAAATGGATAGCTTATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004053 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006560 GO:0006570 GO:0006576 GO:0006591 GO:0006595 GO:0006596 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008783 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009072 GO:0009308 GO:0009309 GO:0009445 GO:0009446 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0016054 GO:0016787 GO:0016810 GO:0016813 GO:0019752 GO:0033388 GO:0033389 GO:0034641 GO:0042401 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044271 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0050897 GO:0051704 GO:0051707 GO:0071704 GO:0097164 GO:0098542 GO:1901360 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko01230 ko05146 map00220 map00330 map01100 map01110 map01130 map01230 map05146

Pfam Domains

Protein Families

Arginase

Protein Analysis

101

Amino Acids

11.36

Weight (kDa)

6.28

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arginase	PF00491	7 - 85	1e-20	Arginase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08870 AT4G08870 AT4G08900
fragaria_vesca	FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450
malus_domestica	MD02G1206500.v1.1 MD02G1206600.v1.1 MD07G1119200.v1.1
prunus_persica	Prupe.2G142300_v2.0.a1 Prupe.2G142300_v2.0.a1
pyrus_communis	pycom07g10550
rosa_chinensis	RchiOBHm_Chr1g0349751 RchiOBHm_Chr1g0349761 RchiOBHm_Chr1g0349771
rosa_laevigata	RLG00000028523 RLG00000028524
rosa_multiflora	Rmu_sc0004624.1_g000004 Rmu_sc0004624.1_g000006 Rmu_sc0014735.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305350
rosa_rugosa	Rorug01G0205900
rosa_samantha	Rh1AG223000 Rh1AG223100 Rh1BG189200 Rh1CG207800 Rh1CG207900 Rh1DG218100
rosa_wichuraiana	Rw1G019010 Rw1G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
AclWI	GGATC	2 cut(s)	5, 18
AgsI	TTSAA	1 cut(s)	146
AluBI	AGCT	3 cut(s)	71, 85, 293
AluI	AGCT	3 cut(s)	71, 85, 293
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	2 cut(s)	5, 18
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	92, 220
AsuHPI	GGTGA	1 cut(s)	50
AvaII	GGWCC	2 cut(s)	92, 220
BamHI	GGATCC	1 cut(s)	10
BccI	CCATC	1 cut(s)	129
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	79
BfuAI	ACCTGC	1 cut(s)	208
Bme18I	GGWCC	2 cut(s)	92, 220
BmgT120I	GGNCC	2 cut(s)	92, 220
BmiI	GGNNCC	2 cut(s)	12, 93
BmsI	GCATC	2 cut(s)	106, 176
BsaBI	GATNNNNATC	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	120
BseGI	GGATG	1 cut(s)	121
BseJI	GATNNNNATC	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	10, 40
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	12, 93
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	2 cut(s)	5, 18
BssMI	GATC	2 cut(s)	10, 40
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	2 cut(s)	13, 43
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	2 cut(s)	10, 40
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNSI	RCATGY	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	14
BveI	ACCTGC	1 cut(s)	208
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	92, 220
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	3 cut(s)	71, 85, 293
CviKI_1	RGCY	3 cut(s)	71, 85, 293
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	2 cut(s)	12, 42
DpnII	GATC	2 cut(s)	10, 40
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	92, 220
EcoO109I	RGGNCCY	1 cut(s)	92
EcoRV	GATATC	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	169
FaeI	CATG	1 cut(s)	167
FaiI	YATR	8 cut(s)	138, 165, 188, 201, 225, 227, 254, 297
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	1 cut(s)	163
FauNDI	CATATG	1 cut(s)	225
FbaI	TGATCA	1 cut(s)	40
FokI	GGATG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	83
HphI	GGTGA	1 cut(s)	50
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	2 cut(s)	113, 125
HpyAV	CCTTC	2 cut(s)	140, 185
HpyCH4V	TGCA	3 cut(s)	167, 217, 249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	167
HspAI	GCGC	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	10, 40
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	4 cut(s)	72, 108, 138, 203
LweI	GCATC	2 cut(s)	106, 176
MalI	GATC	2 cut(s)	12, 42
MboI	GATC	2 cut(s)	10, 40
MboII	GAAGA	2 cut(s)	98, 162
MflI	RGATCY	1 cut(s)	10
MluCI	AATT	2 cut(s)	48, 183
MnlI	CCTC	1 cut(s)	259
Mph1103I	ATGCAT	1 cut(s)	169
MslI	CAYNNNNRTG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	214
NdeI	CATATG	1 cut(s)	225
NdeII	GATC	2 cut(s)	10, 40
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	2 cut(s)	12, 93
NmeAIII	GCCGAG	1 cut(s)	184
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	92
Psp5II	RGGWCCY	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	12, 93
PspPI	GGNCC	2 cut(s)	92, 220
PspPPI	RGGWCCY	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	114
Sau3AI	GATC	2 cut(s)	10, 40
Sau96I	GGNCC	2 cut(s)	92, 220
SetI	ASST	7 cut(s)	37, 73, 87, 97, 151, 222, 295
SfaNI	GCATC	2 cut(s)	106, 176
SinI	GGWCC	2 cut(s)	92, 220
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	2 cut(s)	48, 183
SspI	AATATT	1 cut(s)	158
TaqI	TCGA	1 cut(s)	181
TasI	AATT	2 cut(s)	48, 183
TscAI	CASTG	1 cut(s)	21
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	21
VpaK11BI	GGWCC	2 cut(s)	92, 220
XceI	RCATGY	1 cut(s)	167
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.