Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004401

Physical Location & Seq

Genomic Coordinates Forward (+)

20839524 .. 20840421

Gene Structure 898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1206500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGTTTGTTTTTGTGATTGTAAAATTAAATTCTTGGACTTTGAATTGGTTTTGGCGAATTGGGGAGAGCTTGTGCGTGCTTTAGGAGGAGCTGTGGCATCCACATCTCTTCTTGGAGTTCCTCTTGGACATAACTCGTCATTTCTTCAAGGGCCCGCCTTTGGTCCTCCAAGGATTAGAGAGGCTATCTGGTGTGGGAGCACCAACTCAACAACTGAAGAAGGGAAAGAACTAAATGACCCGCGGGTGCTAACTGATGTTGGTGATGTTCCTGTCCAAGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004053 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006560 GO:0006570 GO:0006576 GO:0006591 GO:0006595 GO:0006596 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008783 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009072 GO:0009308 GO:0009309 GO:0009445 GO:0009446 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0016054 GO:0016787 GO:0016810 GO:0016813 GO:0019752 GO:0033388 GO:0033389 GO:0034641 GO:0042401 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044271 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0050897 GO:0051704 GO:0051707 GO:0071704 GO:0097164 GO:0098542 GO:1901360 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko01230 ko05146 map00220 map00330 map01100 map01110 map01130 map01230 map05146

Pfam Domains

Protein Families

Arginase

Protein Analysis

96

Amino Acids

10.21

Weight (kDa)

4.61

Isoelectric Point (pI)

29.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08870 AT4G08870 AT4G08900
fragaria_vesca	FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450
malus_domestica	MD02G1206500.v1.1 MD02G1206600.v1.1 MD07G1119200.v1.1
prunus_persica	Prupe.2G142300_v2.0.a1 Prupe.2G142300_v2.0.a1
pyrus_communis	pycom07g10550
rosa_chinensis	RchiOBHm_Chr1g0349751 RchiOBHm_Chr1g0349761 RchiOBHm_Chr1g0349771
rosa_laevigata	RLG00000028523 RLG00000028524
rosa_multiflora	Rmu_sc0004624.1_g000004 Rmu_sc0004624.1_g000006 Rmu_sc0014735.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305350
rosa_rugosa	Rorug01G0205900
rosa_samantha	Rh1AG223000 Rh1AG223100 Rh1BG189200 Rh1CG207800 Rh1CG207900 Rh1DG218100
rosa_wichuraiana	Rw1G019010 Rw1G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	244
AciI	CCGC	3 cut(s)	156, 242, 244
AcsI	RAATTY	2 cut(s)	29, 282
AcuI	CTGAAG	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	44, 149
AluBI	AGCT	2 cut(s)	70, 92
AluI	AGCT	2 cut(s)	70, 92
Alw21I	GWGCWC	1 cut(s)	203
AoxI	GGCC	1 cut(s)	152
ApaI	GGGCCC	1 cut(s)	156
ApoI	RAATTY	2 cut(s)	29, 282
AspS9I	GGNCC	3 cut(s)	152, 153, 164
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	3 cut(s)	152, 153, 164
BmiI	GGNNCC	1 cut(s)	154
BmsI	GCATC	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	170, 242
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 78, 87, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	170, 242
BseGI	GGATG	1 cut(s)	98
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	156
Bsh1236I	CGCG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	161
BsnI	GGCC	1 cut(s)	154
Bsp120I	GGGCCC	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	156, 203
BspACI	CCGC	3 cut(s)	156, 242, 244
BspANI	GGCC	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	170, 242
BssT1I	CCWWGG	1 cut(s)	170
Bst6I	CTCTTC	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	78, 156
BstDSI	CCRYGG	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	98
BstFNI	CGCG	1 cut(s)	244
BstSLI	GKGCMC	1 cut(s)	156
BstUI	CGCG	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	154
BtgI	CCRYGG	1 cut(s)	242
BtsCI	GGATG	1 cut(s)	98
Cac8I	GCNNGC	2 cut(s)	78, 156
Cfr13I	GGNCC	3 cut(s)	152, 153, 164
Cfr42I	CCGCGG	1 cut(s)	245
CviJI	RGCY	4 cut(s)	70, 92, 154, 185
CviKI_1	RGCY	4 cut(s)	70, 92, 154, 185
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	170
FaiI	YATR	1 cut(s)	132
FauI	CCCGC	3 cut(s)	163, 237, 249
FokI	GGATG	1 cut(s)	85
FriOI	GRGCYC	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	154
HphI	GGTGA	1 cut(s)	275
HpyAV	CCTTC	1 cut(s)	215
KspI	CCGCGG	1 cut(s)	245
LmnI	GCTCC	2 cut(s)	89, 198
LpnPI	CCDG	1 cut(s)	175
LweI	GCATC	1 cut(s)	107
MboII	GAAGA	3 cut(s)	101, 137, 230
MhlI	GDGCHC	2 cut(s)	156, 203
MluCI	AATT	5 cut(s)	24, 29, 44, 58, 282
MnlI	CCTC	4 cut(s)	80, 132, 175, 177
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	244
MvnI	CGCG	1 cut(s)	244
NlaIV	GGNNCC	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	154
PspOMI	GGGCCC	1 cut(s)	152
PspPI	GGNCC	3 cut(s)	152, 153, 164
SacII	CCGCGG	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	27
Sau96I	GGNCC	3 cut(s)	152, 153, 164
SduI	GDGCHC	2 cut(s)	156, 203
SetI	ASST	2 cut(s)	72, 94
SfaNI	GCATC	1 cut(s)	107
Sfr303I	CCGCGG	1 cut(s)	245
SgrBI	CCGCGG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	164
Sse9I	AATT	5 cut(s)	24, 29, 44, 58, 282
SsiI	CCGC	3 cut(s)	156, 242, 244
StyI	CCWWGG	1 cut(s)	170
TasI	AATT	5 cut(s)	24, 29, 44, 58, 282
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	2 cut(s)	29, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.