Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004401

Physical Location & Seq

Genomic Coordinates Forward (+)

42503684 .. 42507024

Gene Structure 3341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG223100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTCAATAATCGGGAGGAGAGGAATCCACTACTTGCAGAAACTAAACTCTCCGAACGTCCCAACTGATTTGATACACAAGGGTCAGAACAGGGTCATAGATGCCTCCCTCACTCTTATTCGTGAGAGAGCCAAGCTCAAGGGAGAGCTGGTGCGTGCTTTAGGTGGAGCCGTAGCGTCTTCTTCGCTTCTGGGGGTTCCTTTGGGACATAACTCGTCGTTTCTGCAAGGCCCGGCTTTTGCTCCTCCGAGGATTCGGGAGGCTATTTGGTGTGGGAGCACAAACTCTACAACTGAAGAAGGGAAGGAACTGAAGGACCCGCGGGTGCTAACTGATGTGGGCGATGTGCCTGTGCAAGAGATTCGAGATTGTGGAGTGGATGATGATAGATTGATGAATGTGATAACGGAGTCTGTCAAGCTAGTGATGGAAGAGGCTCCACTGCGGCCATTAGTATTAGGTGGTGATCACTCAATTTCATATCCTGTTGTAAGAGCTGTCTCTGAGAAGCTTGGGGGACCTGTGGATGTACTTCATCTTGATGCCCATCCTGATATTTATCACTCCTTTGAAGGTAATAAATACTCACATGCATCTTCATTTGCTCGAATTATGGAGGGTGGTTATGCTCGGCGACTTTTGCAGGTTGGTATTCGCTCAATTAACCATGAAGGGCGTGAACAAGGAAAAAGATTTGGTGTTGAGCAATATGAAATGCGAACCTTTTCAAGAGATCGTGACTTTTTGGAAAACCTGAAACTAGGGGAAGGTGTGAAGGGTGTCTATATCTCGATAGATGTAGATTGCCTTGATCCTGCCTTTGCTCCAGGAGTATCACACATCGAGCCAGGGGGTCTCTCCTTCCGTGATGTTCTCAACATACTGCACAATCTCCAAGGTGATGTGGTTGCTGCAGATGTCGTTGAATTCAATCCACAGCGCGATACTGTTGATGGGATGACTGCAATGGTAGCTGCTAAACTGGTGAGAGAATTGTCTGCAAAGATATCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004053 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006560 GO:0006570 GO:0006576 GO:0006591 GO:0006595 GO:0006596 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008783 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009072 GO:0009308 GO:0009309 GO:0009445 GO:0009446 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0016054 GO:0016787 GO:0016810 GO:0016813 GO:0019752 GO:0033388 GO:0033389 GO:0034641 GO:0042401 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044271 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0050897 GO:0051704 GO:0051707 GO:0071704 GO:0097164 GO:0098542 GO:1901360 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko01230 ko05146 map00220 map00330 map01100 map01110 map01130 map01230 map05146

Pfam Domains

Protein Families

Arginase

Protein Analysis

338

Amino Acids

37.0

Weight (kDa)

6.14

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arginase	PF00491	62 - 332	7.6e-71	Arginase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08870 AT4G08870 AT4G08900
fragaria_vesca	FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450
malus_domestica	MD02G1206500.v1.1 MD02G1206600.v1.1 MD07G1119200.v1.1
prunus_persica	Prupe.2G142300_v2.0.a1 Prupe.2G142300_v2.0.a1
pyrus_communis	pycom07g10550
rosa_chinensis	RchiOBHm_Chr1g0349751 RchiOBHm_Chr1g0349761 RchiOBHm_Chr1g0349771
rosa_laevigata	RLG00000028523 RLG00000028524
rosa_multiflora	Rmu_sc0004624.1_g000004 Rmu_sc0004624.1_g000006 Rmu_sc0014735.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305350
rosa_rugosa	Rorug01G0205900
rosa_samantha	Rh1AG223000 Rh1AG223100 Rh1BG189200 Rh1CG207800 Rh1CG207900 Rh1DG218100
rosa_wichuraiana	Rw1G019010 Rw1G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	634
AccII	CGCG	2 cut(s)	322, 942
AciI	CCGC	3 cut(s)	320, 322, 445
AclWI	GGATC	1 cut(s)	806
AcoI	YGGCCR	1 cut(s)	446
AcsI	RAATTY	1 cut(s)	926
AcuI	CTGAAG	2 cut(s)	315, 332
AfaI	GTAC	1 cut(s)	531
AgsI	TTSAA	4 cut(s)	572, 729, 926, 931
AjnI	CCWGG	2 cut(s)	826, 847
AluBI	AGCT	6 cut(s)	136, 148, 421, 497, 511, 974
AluI	AGCT	6 cut(s)	136, 148, 421, 497, 511, 974
Alw21I	GWGCWC	1 cut(s)	281
Alw26I	GTCTC	2 cut(s)	505, 860
AlwI	GGATC	1 cut(s)	806
AoxI	GGCC	2 cut(s)	229, 446
ApeKI	GCWGC	2 cut(s)	911, 974
ApoI	RAATTY	1 cut(s)	926
Asp700I	GAANNNNTTC	1 cut(s)	724
AspLEI	GCGC	1 cut(s)	942
AspS9I	GGNCC	3 cut(s)	230, 316, 518
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	476, 911, 997
AvaII	GGWCC	2 cut(s)	316, 518
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	898, 961
BccI	CCATC	3 cut(s)	421, 555, 947
BceAI	ACGGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	2 cut(s)	828, 849
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	2 cut(s)	505, 860
BfaI	CTAG	2 cut(s)	422, 761
BfmI	CTRYAG	1 cut(s)	912
BfuAI	ACCTGC	1 cut(s)	634
BisI	GCNGC	3 cut(s)	446, 912, 975
BlsI	GCNGC	3 cut(s)	447, 913, 976
Bme1390I	CCNGG	3 cut(s)	233, 828, 849
Bme18I	GGWCC	2 cut(s)	316, 518
BmgT120I	GGNCC	3 cut(s)	230, 316, 518
BmiI	GGNNCC	5 cut(s)	169, 198, 318, 438, 519
BmrFI	CCNGG	3 cut(s)	233, 828, 849
BmsI	GCATC	3 cut(s)	91, 532, 602
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
BpmI	CTGGAG	1 cut(s)	810
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	233
BsaBI	GATNNNNATC	2 cut(s)	546, 558
BsaI	GGTCTC	1 cut(s)	860
BsaJI	CCNNGG	4 cut(s)	248, 320, 848, 895
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bse1I	ACTGG	1 cut(s)	987
Bse3DI	GCAATG	1 cut(s)	972
Bse8I	GATNNNNATC	2 cut(s)	546, 558
BseBI	CCWGG	2 cut(s)	828, 849
BseDI	CCNNGG	4 cut(s)	248, 320, 848, 895
BseGI	GGATG	4 cut(s)	385, 532, 547, 963
BseJI	GATNNNNATC	2 cut(s)	546, 558
BseMI	GCAATG	1 cut(s)	972
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	1 cut(s)	987
BseRI	GAGGAG	2 cut(s)	31, 234
BseXI	GCAGC	2 cut(s)	898, 961
BsgI	GTGCAG	1 cut(s)	869
Bsh1236I	CGCG	2 cut(s)	322, 942
BshFI	GGCC	2 cut(s)	231, 448
BsiHKAI	GWGCWC	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	3 cut(s)	44, 219, 531
BsmAI	GTCTC	2 cut(s)	505, 860
BsmFI	GGGAC	3 cut(s)	44, 219, 531
BsnI	GGCC	2 cut(s)	231, 448
Bso31I	GGTCTC	1 cut(s)	860
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	3 cut(s)	466, 733, 811
BspACI	CCGC	3 cut(s)	320, 322, 445
BspANI	GGCC	2 cut(s)	231, 448
BspCNI	CTCAG	1 cut(s)	496
BspFNI	CGCG	2 cut(s)	322, 942
BspLI	GGNNCC	5 cut(s)	169, 198, 318, 438, 519
BspMAI	CTGCAG	1 cut(s)	916
BspMI	ACCTGC	1 cut(s)	634
BspPI	GGATC	1 cut(s)	806
BspTNI	GGTCTC	1 cut(s)	860
BsrDI	GCAATG	1 cut(s)	972
BsrI	ACTGG	1 cut(s)	987
BssECI	CCNNGG	4 cut(s)	248, 320, 848, 895
BssMI	GATC	3 cut(s)	466, 733, 811
BssT1I	CCWWGG	1 cut(s)	895
Bst2UI	CCWGG	2 cut(s)	828, 849
Bst4CI	ACNGT	1 cut(s)	949
Bst6I	CTCTTC	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	1 cut(s)	320
BstF5I	GGATG	4 cut(s)	385, 532, 547, 963
BstFNI	CGCG	2 cut(s)	322, 942
BstHHI	GCGC	1 cut(s)	942
BstKTI	GATC	3 cut(s)	469, 736, 814
BstMAI	GTCTC	2 cut(s)	505, 860
BstMBI	GATC	3 cut(s)	466, 733, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	640, 971
BstNI	CCWGG	2 cut(s)	828, 849
BstNSI	RCATGY	1 cut(s)	593
BstSCI	CCNGG	3 cut(s)	231, 826, 847
BstSFI	CTRYAG	1 cut(s)	912
BstUI	CGCG	2 cut(s)	322, 942
BstV1I	GCAGC	2 cut(s)	898, 961
BstV2I	GAAGAC	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	231, 448
BtgI	CCRYGG	1 cut(s)	320
BtgZI	GCGATG	1 cut(s)	357
BtsCI	GGATG	4 cut(s)	385, 532, 547, 963
BtsI	GCAGTG	1 cut(s)	440
BtsIMutI	CAGTG	1 cut(s)	440
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	1 cut(s)	156
CfoI	GCGC	1 cut(s)	942
Cfr13I	GGNCC	3 cut(s)	230, 316, 518
Cfr42I	CCGCGG	1 cut(s)	323
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	2 cut(s)	590, 668
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	3 cut(s)	468, 735, 813
DpnII	GATC	3 cut(s)	466, 733, 811
EaeI	YGGCCR	1 cut(s)	446
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco130I	CCWWGG	1 cut(s)	895
Eco31I	GGTCTC	1 cut(s)	860
Eco32I	GATATC	1 cut(s)	1008
Eco47I	GGWCC	2 cut(s)	316, 518
Eco57I	CTGAAG	2 cut(s)	315, 332
EcoO109I	RGGNCCY	2 cut(s)	316, 518
EcoRI	GAATTC	1 cut(s)	926
EcoRII	CCWGG	2 cut(s)	826, 847
EcoRV	GATATC	1 cut(s)	1008
EcoT14I	CCWWGG	1 cut(s)	895
EcoT22I	ATGCAT	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	895
FaeI	CATG	2 cut(s)	593, 671
FaqI	GGGAC	3 cut(s)	44, 219, 531
FatI	CATG	2 cut(s)	589, 667
FauI	CCCGC	2 cut(s)	315, 327
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	3 cut(s)	446, 912, 975
FokI	GGATG	4 cut(s)	392, 534, 539, 970
Fsp4HI	GCNGC	3 cut(s)	446, 912, 975
FspBI	CTAG	2 cut(s)	422, 761
GlaI	GCGC	1 cut(s)	941
GluI	GCNGC	3 cut(s)	446, 912, 975
GsuI	CTGGAG	1 cut(s)	810
HaeIII	GGCC	2 cut(s)	231, 448
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	165
HhaI	GCGC	1 cut(s)	942
Hin1II	CATG	2 cut(s)	593, 671
Hin6I	GCGC	1 cut(s)	940
HinP1I	GCGC	1 cut(s)	940
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	4 cut(s)	24, 253, 361, 410
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	3 cut(s)	476, 911, 997
Hpy166II	GTNNAC	1 cut(s)	680
Hpy188I	TCNGA	4 cut(s)	54, 87, 249, 505
Hpy188III	TCNNGA	9 cut(s)	13, 122, 257, 365, 539, 551, 729, 737, 790
Hpy8I	GTNNAC	1 cut(s)	680
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	8 cut(s)	293, 298, 307, 566, 665, 761, 769, 871
HpyCH4III	ACNGT	1 cut(s)	949
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	9 cut(s)	37, 226, 355, 593, 643, 886, 914, 965, 1001
HpyF10VI	GCNNNNNNNGC	2 cut(s)	640, 971
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	593, 671
HspAI	GCGC	1 cut(s)	940
Ksp22I	TGATCA	1 cut(s)	466
KspI	CCGCGG	1 cut(s)	323
Kzo9I	GATC	3 cut(s)	466, 733, 811
LmnI	GCTCC	5 cut(s)	167, 247, 276, 442, 829
Lsp1109I	GCAGC	2 cut(s)	898, 961
LweI	GCATC	3 cut(s)	91, 532, 602
MaeI	CTAG	2 cut(s)	422, 761
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	737
MalI	GATC	3 cut(s)	468, 735, 813
MboI	GATC	3 cut(s)	466, 733, 811
MboII	GAAGA	5 cut(s)	171, 174, 308, 443, 588
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	5 cut(s)	474, 609, 660, 926, 992
MlyI	GAGTC	1 cut(s)	419
MnlI	CCTC	9 cut(s)	9, 14, 115, 119, 243, 253, 255, 427, 610
Mph1103I	ATGCAT	1 cut(s)	595
MroXI	GAANNNNTTC	1 cut(s)	724
MseI	TTAA	1 cut(s)	663
MslI	CAYNNNNRTG	1 cut(s)	540
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	3 cut(s)	233, 828, 849
MvaI	CCWGG	2 cut(s)	828, 849
MvnI	CGCG	2 cut(s)	322, 942
MwoI	GCNNNNNNNGC	2 cut(s)	640, 971
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	3 cut(s)	466, 733, 811
NlaIII	CATG	2 cut(s)	593, 671
NlaIV	GGNNCC	5 cut(s)	169, 198, 318, 438, 519
NmeAIII	GCCGAG	1 cut(s)	610
NmuCI	GTSAC	1 cut(s)	737
NsiI	ATGCAT	1 cut(s)	595
NspI	RCATGY	1 cut(s)	593
PdmI	GAANNNNTTC	1 cut(s)	724
PfeI	GAWTC	3 cut(s)	24, 253, 361
PfoI	TCCNGGA	1 cut(s)	826
PkrI	GCNGC	3 cut(s)	447, 913, 976
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PpuMI	RGGWCCY	2 cut(s)	316, 518
Psp5II	RGGWCCY	2 cut(s)	316, 518
Psp6I	CCWGG	2 cut(s)	826, 847
PspGI	CCWGG	2 cut(s)	826, 847
PspN4I	GGNNCC	5 cut(s)	169, 198, 318, 438, 519
PspPI	GGNCC	3 cut(s)	230, 316, 518
PspPPI	RGGWCCY	2 cut(s)	316, 518
PstI	CTGCAG	1 cut(s)	916
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
RseI	CAYNNNNRTG	1 cut(s)	540
SacII	CCGCGG	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	3 cut(s)	446, 912, 975
Sau3AI	GATC	3 cut(s)	466, 733, 811
Sau96I	GGNCC	3 cut(s)	230, 316, 518
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	3 cut(s)	233, 828, 849
SduI	GDGCHC	1 cut(s)	281
SfaNI	GCATC	3 cut(s)	91, 532, 602
SfcI	CTRYAG	1 cut(s)	912
Sfr303I	CCGCGG	1 cut(s)	323
SgrBI	CCGCGG	1 cut(s)	323
SinI	GGWCC	2 cut(s)	316, 518
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	5 cut(s)	474, 609, 660, 926, 992
SsiI	CCGC	3 cut(s)	320, 322, 445
SspMI	CTAG	2 cut(s)	422, 761
StyD4I	CCNGG	3 cut(s)	231, 826, 847
StyI	CCWWGG	1 cut(s)	895
TaaI	ACNGT	1 cut(s)	949
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	4 cut(s)	364, 607, 791, 843
TasI	AATT	5 cut(s)	474, 609, 660, 926, 992
TatI	WGTACW	1 cut(s)	529
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	3 cut(s)	24, 253, 361
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TscAI	CASTG	1 cut(s)	447
TseFI	GTSAC	1 cut(s)	737
TseI	GCWGC	2 cut(s)	911, 974
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	6 cut(s)	410, 468, 524, 588, 684, 726
TspGWI	ACGGA	2 cut(s)	422, 854
TspRI	CASTG	1 cut(s)	447
VpaK11BI	GGWCC	2 cut(s)	316, 518
XapI	RAATTY	1 cut(s)	926
XceI	RCATGY	1 cut(s)	593
XmnI	GAANNNNTTC	1 cut(s)	724
XspI	CTAG	2 cut(s)	422, 761
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.