Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004401

Physical Location & Seq

Genomic Coordinates Reverse (-)

10657437 .. 10659982

Gene Structure 2546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g10550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAATGTCATAAGTGAGTCTGTCAAGCTAGTAATGGAACAGGATCCACTGCGCCCATTAGTGTTAGGTGGTGACCACTCAATTTCTTATCCTGTCGTAAGAGCTGTCGCTGAGAAGCTTGGGGGACCTGTGGATATTCTTCATCTTGATGCCCATCCTGATATCTATCATGCCTTTGAAGATAATAAATATTCACATGCATCTTCTTTTGCTCGTATTATGGAAGGGGGTTATGCTCGGCGCCTATTGCAGGTCGGCATTAGATCAATTAACAATGAAGGGCGTGTACAAGGAAAACGTTTTGGTGTTGAGCAATATGAAATGCGAACCTTTTCACGAGATCGTCACTTTTTGGAAAATCTGAAATTAGGGGAAGGTGTGAAGGGCGTGTATATCTCGATAGATGTAGATTGCCTGGATCCTGCGTTTGCTCCTGGAGTGTCACACATTGAGCCAGGTGGTCTCTCCTTCCGCGATGTACTCAACATACTCCATAACCTCCAAGGTGATGTTGTTGCTGCAGATGTCGTTGAGTTCAACCCACAGCGCGATACTGTTGATGGGATGACTGCAATGGTTGCTGCCAAGCTGGTGAGAGAGCTGACTGCGAAAATTTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004053 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006560 GO:0006570 GO:0006576 GO:0006591 GO:0006595 GO:0006596 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008783 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009072 GO:0009308 GO:0009309 GO:0009445 GO:0009446 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0016054 GO:0016787 GO:0016810 GO:0016813 GO:0019752 GO:0033388 GO:0033389 GO:0034641 GO:0042401 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044271 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0050897 GO:0051704 GO:0051707 GO:0071704 GO:0097164 GO:0098542 GO:1901360 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko01230 ko05146 map00220 map00330 map01100 map01110 map01130 map01230 map05146

Pfam Domains

Protein Families

Arginase

Protein Analysis

208

Amino Acids

22.88

Weight (kDa)

5.89

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arginase	PF00491	2 - 201	4.5e-61	Arginase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08870 AT4G08870 AT4G08900
fragaria_vesca	FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450
malus_domestica	MD02G1206500.v1.1 MD02G1206600.v1.1 MD07G1119200.v1.1
prunus_persica	Prupe.2G142300_v2.0.a1 Prupe.2G142300_v2.0.a1
pyrus_communis	pycom07g10550
rosa_chinensis	RchiOBHm_Chr1g0349751 RchiOBHm_Chr1g0349761 RchiOBHm_Chr1g0349771
rosa_laevigata	RLG00000028523 RLG00000028524
rosa_multiflora	Rmu_sc0004624.1_g000004 Rmu_sc0004624.1_g000006 Rmu_sc0014735.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305350
rosa_rugosa	Rorug01G0205900
rosa_samantha	Rh1AG223000 Rh1AG223100 Rh1BG189200 Rh1CG207800 Rh1CG207900 Rh1DG218100
rosa_wichuraiana	Rw1G019010 Rw1G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	240
AccII	CGCG	2 cut(s)	474, 549
AciI	CCGC	1 cut(s)	472
AclI	AACGTT	1 cut(s)	298
AclWI	GGATC	4 cut(s)	38, 51, 413, 426
AcsI	RAATTY	1 cut(s)	612
AcyI	GRCGYC	1 cut(s)	241
AfaI	GTAC	2 cut(s)	288, 480
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgsI	TTSAA	3 cut(s)	179, 538, 618
AjnI	CCWGG	3 cut(s)	414, 433, 454
AluBI	AGCT	5 cut(s)	28, 104, 118, 589, 601
AluI	AGCT	5 cut(s)	28, 104, 118, 589, 601
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	4 cut(s)	38, 51, 413, 426
ApeKI	GCWGC	2 cut(s)	518, 581
ApoI	RAATTY	1 cut(s)	612
Asp700I	GAANNNNTTC	1 cut(s)	331
AspLEI	GCGC	3 cut(s)	54, 243, 549
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	3 cut(s)	83, 518, 604
AvaII	GGWCC	1 cut(s)	125
BamHI	GGATCC	2 cut(s)	43, 418
BanI	GGYRCC	1 cut(s)	240
BarI	GAAGNNNNNNTAC	2 cut(s)	270, 302
BauI	CACGAG	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	505, 568
BccI	CCATC	2 cut(s)	162, 554
BciT130I	CCWGG	3 cut(s)	416, 435, 456
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	519
BfoI	RGCGCY	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	2 cut(s)	519, 582
BlsI	GCNGC	2 cut(s)	520, 583
Bme1390I	CCNGG	3 cut(s)	416, 435, 456
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	4 cut(s)	45, 126, 242, 420
BmrFI	CCNGG	3 cut(s)	416, 435, 456
BmsI	GCATC	2 cut(s)	139, 209
BpmI	CTGGAG	1 cut(s)	456
BsaBI	GATNNNNATC	2 cut(s)	153, 165
BsaHI	GRCGYC	1 cut(s)	241
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	579
Bse8I	GATNNNNATC	2 cut(s)	153, 165
BseBI	CCWGG	3 cut(s)	416, 435, 456
BseDI	CCNNGG	1 cut(s)	502
BseGI	GGATG	2 cut(s)	154, 570
BseJI	GATNNNNATC	2 cut(s)	153, 165
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	505, 568
Bsh1236I	CGCG	2 cut(s)	474, 549
BshNI	GGYRCC	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	138
Bso31I	GGTCTC	1 cut(s)	467
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	4 cut(s)	43, 263, 340, 418
BspACI	CCGC	1 cut(s)	472
BspCNI	CTCAG	1 cut(s)	103
BspFNI	CGCG	2 cut(s)	474, 549
BspLI	GGNNCC	4 cut(s)	45, 126, 242, 420
BspMAI	CTGCAG	1 cut(s)	523
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	4 cut(s)	38, 51, 413, 426
BspT107I	GGYRCC	1 cut(s)	240
BspTNI	GGTCTC	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	579
BsrGI	TGTACA	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	502
BssMI	GATC	4 cut(s)	43, 263, 340, 418
BssNI	GRCGYC	1 cut(s)	241
BssSI	CACGAG	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	502
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	3 cut(s)	416, 435, 456
Bst4CI	ACNGT	1 cut(s)	556
BstACI	GRCGYC	1 cut(s)	241
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstAUI	TGTACA	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	111
BstEII	GGTNACC	1 cut(s)	71
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	154, 570
BstFNI	CGCG	2 cut(s)	474, 549
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	3 cut(s)	54, 243, 549
BstKTI	GATC	4 cut(s)	46, 266, 343, 421
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	4 cut(s)	43, 263, 340, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 578
BstNI	CCWGG	3 cut(s)	416, 435, 456
BstNSI	RCATGY	1 cut(s)	200
BstPI	GGTNACC	1 cut(s)	71
BstSCI	CCNGG	3 cut(s)	414, 433, 454
BstSFI	CTRYAG	1 cut(s)	519
BstUI	CGCG	2 cut(s)	474, 549
BstV1I	GCAGC	2 cut(s)	505, 568
BstX2I	RGATCY	2 cut(s)	43, 418
BstYI	RGATCY	2 cut(s)	43, 418
BtgZI	GCGATG	1 cut(s)	489
BtsCI	GGATG	2 cut(s)	154, 570
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	47
BveI	ACCTGC	1 cut(s)	241
CfoI	GCGC	3 cut(s)	54, 243, 549
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	287, 479
CviAII	CATG	2 cut(s)	170, 197
CviJI	RGCY	6 cut(s)	28, 104, 118, 454, 589, 601
CviKI_1	RGCY	6 cut(s)	28, 104, 118, 454, 589, 601
CviQI	GTAC	2 cut(s)	287, 479
DdeI	CTNAG	1 cut(s)	111
DinI	GGCGCC	1 cut(s)	242
DpnI	GATC	4 cut(s)	45, 265, 342, 420
DpnII	GATC	4 cut(s)	43, 263, 340, 418
Eco130I	CCWWGG	1 cut(s)	502
Eco31I	GGTCTC	1 cut(s)	467
Eco32I	GATATC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	125
Eco91I	GGTNACC	1 cut(s)	71
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	125
EcoO65I	GGTNACC	1 cut(s)	71
EcoRII	CCWGG	3 cut(s)	414, 433, 454
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	502
EcoT22I	ATGCAT	1 cut(s)	202
EgeI	GGCGCC	1 cut(s)	242
EheI	GGCGCC	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	2 cut(s)	173, 200
FaiI	YATR	9 cut(s)	11, 171, 198, 221, 234, 318, 393, 488, 495
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	2 cut(s)	169, 196
Fnu4HI	GCNGC	2 cut(s)	519, 582
FokI	GGATG	2 cut(s)	141, 577
Fsp4HI	GCNGC	2 cut(s)	519, 582
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	3 cut(s)	53, 242, 548
GluI	GCNGC	2 cut(s)	519, 582
GsuI	CTGGAG	1 cut(s)	456
HaeII	RGCGCY	1 cut(s)	244
HhaI	GCGC	3 cut(s)	54, 243, 549
Hin1I	GRCGYC	1 cut(s)	241
Hin1II	CATG	2 cut(s)	173, 200
Hin6I	GCGC	3 cut(s)	52, 241, 547
HinP1I	GCGC	3 cut(s)	52, 241, 547
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	1 cut(s)	17
HphI	GGTGA	3 cut(s)	83, 518, 604
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	4 cut(s)	146, 158, 336, 397
Hpy8I	GTNNAC	1 cut(s)	287
HpyAV	CCTTC	5 cut(s)	218, 272, 368, 376, 478
HpyCH4III	ACNGT	1 cut(s)	556
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	4 cut(s)	200, 250, 521, 572
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 578
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	298
Hsp92I	GRCGYC	1 cut(s)	241
Hsp92II	CATG	2 cut(s)	173, 200
HspAI	GCGC	3 cut(s)	52, 241, 547
KasI	GGCGCC	1 cut(s)	240
Kzo9I	GATC	4 cut(s)	43, 263, 340, 418
LmnI	GCTCC	1 cut(s)	436
Lsp1109I	GCAGC	2 cut(s)	505, 568
LweI	GCATC	2 cut(s)	139, 209
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	3 cut(s)	71, 344, 441
MalI	GATC	4 cut(s)	45, 265, 342, 420
MboI	GATC	4 cut(s)	43, 263, 340, 418
MboII	GAAGA	3 cut(s)	131, 191, 195
MflI	RGATCY	2 cut(s)	43, 418
MluCI	AATT	4 cut(s)	81, 267, 365, 612
Mly113I	GGCGCC	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	1 cut(s)	509
Mph1103I	ATGCAT	1 cut(s)	202
MroXI	GAANNNNTTC	1 cut(s)	331
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	147
MspR9I	CCNGG	3 cut(s)	416, 435, 456
MvaI	CCWGG	3 cut(s)	416, 435, 456
MvnI	CGCG	2 cut(s)	474, 549
MwoI	GCNNNNNNNGC	2 cut(s)	247, 578
NarI	GGCGCC	1 cut(s)	241
NdeII	GATC	4 cut(s)	43, 263, 340, 418
NlaIII	CATG	2 cut(s)	173, 200
NlaIV	GGNNCC	4 cut(s)	45, 126, 242, 420
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	3 cut(s)	71, 344, 441
NsiI	ATGCAT	1 cut(s)	202
NspI	RCATGY	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	331
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	2 cut(s)	520, 583
PleI	GAGTC	1 cut(s)	25
PluTI	GGCGCC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	25
PpuMI	RGGWCCY	1 cut(s)	125
Psp1406I	AACGTT	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	125
Psp6I	CCWGG	3 cut(s)	414, 433, 454
PspEI	GGTNACC	1 cut(s)	71
PspGI	CCWGG	3 cut(s)	414, 433, 454
PspN4I	GGNNCC	4 cut(s)	45, 126, 242, 420
PspPI	GGNCC	1 cut(s)	125
PspPPI	RGGWCCY	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	523
PsuI	RGATCY	2 cut(s)	43, 418
RsaI	GTAC	2 cut(s)	288, 480
RsaNI	GTAC	2 cut(s)	287, 479
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	2 cut(s)	519, 582
Sau3AI	GATC	4 cut(s)	43, 263, 340, 418
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	3 cut(s)	416, 435, 456
SfaNI	GCATC	2 cut(s)	139, 209
SfcI	CTRYAG	1 cut(s)	519
SfoI	GGCGCC	1 cut(s)	242
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	4 cut(s)	81, 267, 365, 612
SsiI	CCGC	1 cut(s)	472
SspDI	GGCGCC	1 cut(s)	240
SspI	AATATT	1 cut(s)	191
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	3 cut(s)	414, 433, 454
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	1 cut(s)	556
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	398
TasI	AATT	4 cut(s)	81, 267, 365, 612
TatI	WGTACW	2 cut(s)	286, 478
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	3 cut(s)	71, 344, 441
TseI	GCWGC	2 cut(s)	518, 581
Tsp45I	GTSAC	3 cut(s)	71, 344, 441
TspDTI	ATGAA	4 cut(s)	17, 131, 291, 333
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	125
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	612
XceI	RCATGY	1 cut(s)	200
XmnI	GAANNNNTTC	1 cut(s)	331
XspI	CTAG	1 cut(s)	29
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.