Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014735.1

Orthogroup ID

OG0004401

Physical Location & Seq

Genomic Coordinates Forward (+)

15 .. 1218

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014735.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atggagggtggttatgctcggcgacttttgcaggtcggtattcgctcaattaaccatgaagggcgtgaacaaggaaaaagatttggtgttgagcaatatgaaatgcgaaccttttcaagagatcgtgactttttggaaaacctgaaactaggggaaggtgtgaagggtgtctatatctcgatagatgtagattgccttgatcctgcctttgctccaggagtatcacacatcgagccagggggtctctccttccgtgatgttctcaacatactgcacaatctccaaggtgatgtggttgctgcagatgtcgttgaattcaatccacagcgcgatactgctgatgggatgactgcaatggtagctgctaaactggtgagagaattgtctgcaaagatatcaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004053 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006560 GO:0006570 GO:0006576 GO:0006591 GO:0006595 GO:0006596 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008783 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009072 GO:0009308 GO:0009309 GO:0009445 GO:0009446 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0016054 GO:0016787 GO:0016810 GO:0016813 GO:0019752 GO:0033388 GO:0033389 GO:0034641 GO:0042401 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044271 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0050897 GO:0051704 GO:0051707 GO:0071704 GO:0097164 GO:0098542 GO:1901360 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko01230 ko05146 map00220 map00330 map01100 map01110 map01130 map01230 map05146

Pfam Domains

Protein Families

Arginase

Protein Analysis

134

Amino Acids

14.82

Weight (kDa)

5.61

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08870 AT4G08870 AT4G08900
fragaria_vesca	FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450
malus_domestica	MD02G1206500.v1.1 MD02G1206600.v1.1 MD07G1119200.v1.1
prunus_persica	Prupe.2G142300_v2.0.a1 Prupe.2G142300_v2.0.a1
pyrus_communis	pycom07g10550
rosa_chinensis	RchiOBHm_Chr1g0349751 RchiOBHm_Chr1g0349761 RchiOBHm_Chr1g0349771
rosa_laevigata	RLG00000028523 RLG00000028524
rosa_multiflora	Rmu_sc0004624.1_g000004 Rmu_sc0004624.1_g000006 Rmu_sc0014735.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305350
rosa_rugosa	Rorug01G0205900
rosa_samantha	Rh1AG223000 Rh1AG223100 Rh1BG189200 Rh1CG207800 Rh1CG207900 Rh1DG218100
rosa_wichuraiana	Rw1G019010 Rw1G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	22
AccII	CGCG	1 cut(s)	330
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	314
AgsI	TTSAA	3 cut(s)	117, 314, 319
AjnI	CCWGG	2 cut(s)	214, 235
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	194
ApeKI	GCWGC	2 cut(s)	299, 362
ApoI	RAATTY	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	299, 385
BbvI	GCAGC	2 cut(s)	286, 349
BccI	CCATC	1 cut(s)	335
BciT130I	CCWGG	2 cut(s)	216, 237
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	22
BisI	GCNGC	2 cut(s)	300, 363
BlsI	GCNGC	2 cut(s)	301, 364
Bme1390I	CCNGG	2 cut(s)	216, 237
BmrFI	CCNGG	2 cut(s)	216, 237
BpmI	CTGGAG	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	236, 283
Bse1I	ACTGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	2 cut(s)	216, 237
BseDI	CCNNGG	2 cut(s)	236, 283
BseGI	GGATG	1 cut(s)	351
BseMI	GCAATG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	286, 349
BsgI	GTGCAG	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	330
BsmAI	GTCTC	1 cut(s)	248
Bso31I	GGTCTC	1 cut(s)	248
Bsp143I	GATC	2 cut(s)	121, 199
BspFNI	CGCG	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	375
BssECI	CCNNGG	2 cut(s)	236, 283
BssMI	GATC	2 cut(s)	121, 199
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	2 cut(s)	216, 237
BstF5I	GGATG	1 cut(s)	351
BstFNI	CGCG	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	2 cut(s)	124, 202
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	2 cut(s)	121, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 359
BstNI	CCWGG	2 cut(s)	216, 237
BstSCI	CCNGG	2 cut(s)	214, 235
BstSFI	CTRYAG	1 cut(s)	300
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	2 cut(s)	286, 349
BtsCI	GGATG	1 cut(s)	351
BveI	ACCTGC	1 cut(s)	22
CfoI	GCGC	1 cut(s)	330
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	2 cut(s)	235, 362
CviKI_1	RGCY	2 cut(s)	235, 362
DpnI	GATC	2 cut(s)	123, 201
DpnII	GATC	2 cut(s)	121, 199
Eco130I	CCWWGG	1 cut(s)	283
Eco31I	GGTCTC	1 cut(s)	248
Eco32I	GATATC	1 cut(s)	396
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	214, 235
EcoRV	GATATC	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	1 cut(s)	59
FaiI	YATR	5 cut(s)	15, 57, 99, 174, 269
FatI	CATG	1 cut(s)	55
Fnu4HI	GCNGC	2 cut(s)	300, 363
FokI	GGATG	1 cut(s)	358
Fsp4HI	GCNGC	2 cut(s)	300, 363
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	2 cut(s)	300, 363
GsuI	CTGGAG	1 cut(s)	198
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HphI	GGTGA	2 cut(s)	299, 385
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188III	TCNNGA	3 cut(s)	117, 125, 178
Hpy8I	GTNNAC	1 cut(s)	68
HpyAV	CCTTC	4 cut(s)	53, 149, 157, 259
HpyCH4V	TGCA	5 cut(s)	31, 274, 302, 353, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 359
Hsp92II	CATG	1 cut(s)	59
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	121, 199
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	8 cut(s)	17, 155, 201, 216, 222, 228, 249, 356
Lsp1109I	GCAGC	2 cut(s)	286, 349
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	2 cut(s)	123, 201
MboI	GATC	2 cut(s)	121, 199
MluCI	AATT	3 cut(s)	48, 314, 380
MroXI	GAANNNNTTC	1 cut(s)	112
MseI	TTAA	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	216, 237
MvaI	CCWGG	2 cut(s)	216, 237
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	2 cut(s)	28, 359
NdeII	GATC	2 cut(s)	121, 199
NlaIII	CATG	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	112
PfoI	TCCNGGA	1 cut(s)	214
PkrI	GCNGC	2 cut(s)	301, 364
Psp6I	CCWGG	2 cut(s)	214, 235
PspGI	CCWGG	2 cut(s)	214, 235
PstI	CTGCAG	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	2 cut(s)	300, 363
Sau3AI	GATC	2 cut(s)	121, 199
ScrFI	CCNGG	2 cut(s)	216, 237
SetI	ASST	6 cut(s)	36, 113, 144, 160, 289, 364
SfcI	CTRYAG	1 cut(s)	300
Sse9I	AATT	3 cut(s)	48, 314, 380
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	2 cut(s)	214, 235
StyI	CCWWGG	1 cut(s)	283
TaqI	TCGA	2 cut(s)	179, 231
TasI	AATT	3 cut(s)	48, 314, 380
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	2 cut(s)	299, 362
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	72, 114
TspGWI	ACGGA	1 cut(s)	242
XapI	RAATTY	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	112
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.