Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004401

Physical Location & Seq

Genomic Coordinates Forward (+)

44980568 .. 44985123

Gene Structure 4556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG207800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCAATAATCGGGAGGAGAGGAATCCACCACTTGCAGAAACTAAACACTCCGAACATCCCAACAGTTGAGTGTCAGAACCGGGTCATAGATGCCTCCCTCACTCTTATTCGTGAGAGTGCCAAACTCAAGGGAAAGCTGGTGCGCGCTTTAGGTGGAGCCGTAGCGTCTTCTTCGCTTCTGGGGGTTCCTTTGGGACATAACTCGTCGTTTCTGCAAGGCCCGGCTTTTGCTCCTCCGTTGATTCGGGAGGCTATTTGGTGCGGTAGCACAAACTCTACAACTGAAGAAGGGAAGGAACTGAAGGATCCGCGGGTGCTAACTGATGTGGGCAATTTGCCTGTGCAAGAGATTCGAGATTGTGGAGTGGATGATGATAGATTGATGAATGTGATAAGTGAGTCTGTCAAGCTAGTGATGGAAGAGGCTCCACTGCGGCCATTAGTATTAGGTGGTGATCACTCAATTTCGTATCCTGTTGTAAGAGCTGTCTCTGAGAAGCTTGGGGGACCTGTGGACATACTTCATCTTGATGCCCATCCTGATATTTATCATGCCTTTGAGGGTAATAAATACTCACATGCATCTTCTTTTGCTCGAATTATGGAGGGTGGTTATGCTCGGCGACTTTTGCAGGTTGGTATTCGCTCAATTAACTATGAAGGGCGTGAACAAGGAAAAAGATTTGGTGTTGAGCAATATGAAATGCGAACCTTTTCAAGAGATCGTGACTTTTTGGAAAACCTGAAACTAGGGGAAGGTGTGAAGGGTGTCTATATCTCGATAGATGTAGATTGCCTTGATCCTGCCTTTGCTCCAGGAGTATCACACATCGAGCCAGGGGGTCTCTCCTTCCGTGATGTTCTCAACATACTGCACAATCTCCAAGGTGATGTGGTTGCTGCAGATGTCGTTGAATTCAATCCACAGCGCGATACTGCTGATGGGATGACTGCAATGGTAGCTGCTAAACTGGTGAGAGAATTGGCTGCAAAGATGTCAAAATCATATAATCCTTGGGAATATCCGGAGACACCAAGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004053 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006560 GO:0006570 GO:0006576 GO:0006591 GO:0006595 GO:0006596 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008783 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009072 GO:0009308 GO:0009309 GO:0009445 GO:0009446 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0016054 GO:0016787 GO:0016810 GO:0016813 GO:0019752 GO:0033388 GO:0033389 GO:0034641 GO:0042401 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044271 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0050897 GO:0051704 GO:0051707 GO:0071704 GO:0097164 GO:0098542 GO:1901360 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko01230 ko05146 map00220 map00330 map01100 map01110 map01130 map01230 map05146

Pfam Domains

Protein Families

Arginase

Protein Analysis

348

Amino Acids

38.15

Weight (kDa)

5.84

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arginase	PF00491	59 - 329	3.6e-70	Arginase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08870 AT4G08870 AT4G08900
fragaria_vesca	FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450
malus_domestica	MD02G1206500.v1.1 MD02G1206600.v1.1 MD07G1119200.v1.1
prunus_persica	Prupe.2G142300_v2.0.a1 Prupe.2G142300_v2.0.a1
pyrus_communis	pycom07g10550
rosa_chinensis	RchiOBHm_Chr1g0349751 RchiOBHm_Chr1g0349761 RchiOBHm_Chr1g0349771
rosa_laevigata	RLG00000028523 RLG00000028524
rosa_multiflora	Rmu_sc0004624.1_g000004 Rmu_sc0004624.1_g000006 Rmu_sc0014735.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305350
rosa_rugosa	Rorug01G0205900
rosa_samantha	Rh1AG223000 Rh1AG223100 Rh1BG189200 Rh1CG207800 Rh1CG207900 Rh1DG218100
rosa_wichuraiana	Rw1G019010 Rw1G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	625
AccII	CGCG	3 cut(s)	147, 313, 933
AccIII	TCCGGA	1 cut(s)	1027
AciI	CCGC	4 cut(s)	264, 311, 313, 436
AclWI	GGATC	3 cut(s)	302, 315, 797
AcoI	YGGCCR	1 cut(s)	437
AcsI	RAATTY	1 cut(s)	917
AcuI	CTGAAG	2 cut(s)	306, 323
AgsI	TTSAA	3 cut(s)	720, 917, 922
AjnI	CCWGG	2 cut(s)	817, 838
AluBI	AGCT	6 cut(s)	139, 412, 488, 502, 965, 1041
AluI	AGCT	6 cut(s)	139, 412, 488, 502, 965, 1041
Alw26I	GTCTC	3 cut(s)	496, 851, 1025
AlwI	GGATC	3 cut(s)	302, 315, 797
Aor13HI	TCCGGA	1 cut(s)	1027
AoxI	GGCC	2 cut(s)	220, 437
ApeKI	GCWGC	3 cut(s)	902, 965, 989
ApoI	RAATTY	1 cut(s)	917
Asp700I	GAANNNNTTC	1 cut(s)	715
AspLEI	GCGC	3 cut(s)	147, 149, 933
AspS9I	GGNCC	2 cut(s)	221, 509
AsuC2I	CCSGG	2 cut(s)	83, 224
AsuHPI	GGTGA	3 cut(s)	467, 902, 988
AvaII	GGWCC	1 cut(s)	509
BamHI	GGATCC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	889, 952, 976
BccI	CCATC	3 cut(s)	412, 546, 938
BceAI	ACGGC	1 cut(s)	146
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	2 cut(s)	819, 840
BciVI	GTATCC	1 cut(s)	483
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	2 cut(s)	83, 224
BcoDI	GTCTC	3 cut(s)	496, 851, 1025
BfaI	CTAG	3 cut(s)	413, 752, 1045
BfmI	CTRYAG	1 cut(s)	903
BfuAI	ACCTGC	1 cut(s)	625
BfuI	GTATCC	1 cut(s)	483
BisI	GCNGC	4 cut(s)	437, 903, 966, 990
BlsI	GCNGC	4 cut(s)	438, 904, 967, 991
Bme1390I	CCNGG	4 cut(s)	83, 224, 819, 840
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	2 cut(s)	221, 509
BmiI	GGNNCC	5 cut(s)	160, 189, 309, 429, 510
BmrFI	CCNGG	4 cut(s)	83, 224, 819, 840
BmsI	GCATC	3 cut(s)	82, 523, 593
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	801
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	2 cut(s)	83, 224
BsaBI	GATNNNNATC	2 cut(s)	537, 549
BsaI	GGTCTC	1 cut(s)	851
BsaJI	CCNNGG	4 cut(s)	311, 839, 886, 1016
BsaWI	WCCGGW	1 cut(s)	1027
Bse1I	ACTGG	1 cut(s)	978
Bse3DI	GCAATG	1 cut(s)	963
Bse8I	GATNNNNATC	2 cut(s)	537, 549
BseAI	TCCGGA	1 cut(s)	1027
BseBI	CCWGG	2 cut(s)	819, 840
BseDI	CCNNGG	4 cut(s)	311, 839, 886, 1016
BseGI	GGATG	4 cut(s)	57, 376, 538, 954
BseJI	GATNNNNATC	2 cut(s)	537, 549
BseMI	GCAATG	1 cut(s)	963
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	1 cut(s)	978
BsePI	GCGCGC	1 cut(s)	145
BseRI	GAGGAG	2 cut(s)	31, 225
BseXI	GCAGC	3 cut(s)	889, 952, 976
BsgI	GTGCAG	1 cut(s)	860
Bsh1236I	CGCG	3 cut(s)	147, 313, 933
BshFI	GGCC	2 cut(s)	222, 439
BsiSI	CCGG	3 cut(s)	82, 224, 1028
BslFI	GGGAC	2 cut(s)	210, 522
BsmAI	GTCTC	3 cut(s)	496, 851, 1025
BsmFI	GGGAC	2 cut(s)	210, 522
BsnI	GGCC	2 cut(s)	222, 439
Bso31I	GGTCTC	1 cut(s)	851
Bsp13I	TCCGGA	1 cut(s)	1027
Bsp143I	GATC	4 cut(s)	307, 457, 724, 802
BspACI	CCGC	4 cut(s)	264, 311, 313, 436
BspANI	GGCC	2 cut(s)	222, 439
BspCNI	CTCAG	1 cut(s)	487
BspEI	TCCGGA	1 cut(s)	1027
BspFNI	CGCG	3 cut(s)	147, 313, 933
BspLI	GGNNCC	5 cut(s)	160, 189, 309, 429, 510
BspMAI	CTGCAG	1 cut(s)	907
BspMI	ACCTGC	1 cut(s)	625
BspPI	GGATC	3 cut(s)	302, 315, 797
BspTNI	GGTCTC	1 cut(s)	851
BsrDI	GCAATG	1 cut(s)	963
BsrI	ACTGG	1 cut(s)	978
BssECI	CCNNGG	4 cut(s)	311, 839, 886, 1016
BssHII	GCGCGC	1 cut(s)	145
BssMI	GATC	4 cut(s)	307, 457, 724, 802
BssT1I	CCWWGG	2 cut(s)	886, 1016
Bst2UI	CCWGG	2 cut(s)	819, 840
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	495
BstDSI	CCRYGG	1 cut(s)	311
BstF5I	GGATG	4 cut(s)	57, 376, 538, 954
BstFNI	CGCG	3 cut(s)	147, 313, 933
BstHHI	GCGC	3 cut(s)	147, 149, 933
BstKTI	GATC	4 cut(s)	310, 460, 727, 805
BstMAI	GTCTC	3 cut(s)	496, 851, 1025
BstMBI	GATC	4 cut(s)	307, 457, 724, 802
BstMWI	GCNNNNNNNGC	2 cut(s)	631, 962
BstNI	CCWGG	2 cut(s)	819, 840
BstNSI	RCATGY	1 cut(s)	584
BstSCI	CCNGG	4 cut(s)	81, 222, 817, 838
BstSFI	CTRYAG	1 cut(s)	903
BstUI	CGCG	3 cut(s)	147, 313, 933
BstV1I	GCAGC	3 cut(s)	889, 952, 976
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	483
BsuRI	GGCC	2 cut(s)	222, 439
BtgI	CCRYGG	1 cut(s)	311
BtsCI	GGATG	4 cut(s)	57, 376, 538, 954
BtsI	GCAGTG	1 cut(s)	431
BtsIMutI	CAGTG	1 cut(s)	431
BveI	ACCTGC	1 cut(s)	625
Cac8I	GCNNGC	1 cut(s)	147
CfoI	GCGC	3 cut(s)	147, 149, 933
Cfr13I	GGNCC	2 cut(s)	221, 509
Cfr42I	CCGCGG	1 cut(s)	314
CseI	GACGC	1 cut(s)	156
CviAII	CATG	2 cut(s)	554, 581
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	4 cut(s)	309, 459, 726, 804
DpnII	GATC	4 cut(s)	307, 457, 724, 802
EaeI	YGGCCR	1 cut(s)	437
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco130I	CCWWGG	2 cut(s)	886, 1016
Eco31I	GGTCTC	1 cut(s)	851
Eco47I	GGWCC	1 cut(s)	509
Eco57I	CTGAAG	2 cut(s)	306, 323
EcoO109I	RGGNCCY	1 cut(s)	509
EcoRI	GAATTC	1 cut(s)	917
EcoRII	CCWGG	2 cut(s)	817, 838
EcoT14I	CCWWGG	2 cut(s)	886, 1016
EcoT22I	ATGCAT	1 cut(s)	586
ErhI	CCWWGG	2 cut(s)	886, 1016
FaeI	CATG	2 cut(s)	557, 584
FaqI	GGGAC	2 cut(s)	210, 522
FatI	CATG	2 cut(s)	553, 580
FauI	CCCGC	1 cut(s)	306
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	4 cut(s)	437, 903, 966, 990
FokI	GGATG	4 cut(s)	44, 383, 525, 961
Fsp4HI	GCNGC	4 cut(s)	437, 903, 966, 990
FspBI	CTAG	3 cut(s)	413, 752, 1045
GlaI	GCGC	3 cut(s)	146, 148, 932
GluI	GCNGC	4 cut(s)	437, 903, 966, 990
GsuI	CTGGAG	1 cut(s)	801
HaeIII	GGCC	2 cut(s)	222, 439
HapII	CCGG	3 cut(s)	82, 224, 1028
HgaI	GACGC	1 cut(s)	156
HhaI	GCGC	3 cut(s)	147, 149, 933
Hin1II	CATG	2 cut(s)	557, 584
Hin6I	GCGC	3 cut(s)	145, 147, 931
HinP1I	GCGC	3 cut(s)	145, 147, 931
HindIII	AAGCTT	2 cut(s)	500, 1039
HinfI	GANTC	4 cut(s)	24, 244, 352, 401
HpaII	CCGG	3 cut(s)	82, 224, 1028
HphI	GGTGA	3 cut(s)	467, 902, 988
Hpy166II	GTNNAC	2 cut(s)	517, 671
Hpy188I	TCNGA	3 cut(s)	54, 78, 496
Hpy8I	GTNNAC	2 cut(s)	517, 671
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	7 cut(s)	284, 289, 298, 656, 752, 760, 862
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	9 cut(s)	37, 217, 346, 584, 634, 877, 905, 956, 992
HpyF10VI	GCNNNNNNNGC	2 cut(s)	631, 962
HpyF3I	CTNAG	1 cut(s)	495
Hsp92II	CATG	2 cut(s)	557, 584
HspAI	GCGC	3 cut(s)	145, 147, 931
Kpn2I	TCCGGA	1 cut(s)	1027
Ksp22I	TGATCA	1 cut(s)	457
KspI	CCGCGG	1 cut(s)	314
Kzo9I	GATC	4 cut(s)	307, 457, 724, 802
LmnI	GCTCC	4 cut(s)	158, 238, 433, 820
Lsp1109I	GCAGC	3 cut(s)	889, 952, 976
LweI	GCATC	3 cut(s)	82, 523, 593
MaeI	CTAG	3 cut(s)	413, 752, 1045
MaeIII	GTNAC	1 cut(s)	728
MalI	GATC	4 cut(s)	309, 459, 726, 804
MboI	GATC	4 cut(s)	307, 457, 724, 802
MboII	GAAGA	5 cut(s)	162, 165, 299, 434, 579
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	6 cut(s)	334, 465, 600, 651, 917, 983
MlyI	GAGTC	1 cut(s)	410
MnlI	CCTC	9 cut(s)	9, 14, 106, 110, 244, 246, 418, 556, 601
Mph1103I	ATGCAT	1 cut(s)	586
MroI	TCCGGA	1 cut(s)	1027
MroXI	GAANNNNTTC	1 cut(s)	715
MseI	TTAA	1 cut(s)	654
MslI	CAYNNNNRTG	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	3 cut(s)	82, 224, 1028
MspR9I	CCNGG	4 cut(s)	83, 224, 819, 840
MvaI	CCWGG	2 cut(s)	819, 840
MvnI	CGCG	3 cut(s)	147, 313, 933
MwoI	GCNNNNNNNGC	2 cut(s)	631, 962
NciI	CCSGG	2 cut(s)	83, 224
NdeII	GATC	4 cut(s)	307, 457, 724, 802
NlaIII	CATG	2 cut(s)	557, 584
NlaIV	GGNNCC	5 cut(s)	160, 189, 309, 429, 510
NmeAIII	GCCGAG	1 cut(s)	601
NmuCI	GTSAC	1 cut(s)	728
NsiI	ATGCAT	1 cut(s)	586
NspI	RCATGY	1 cut(s)	584
PauI	GCGCGC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	715
PfeI	GAWTC	3 cut(s)	24, 244, 352
PfoI	TCCNGGA	1 cut(s)	817
PkrI	GCNGC	4 cut(s)	438, 904, 967, 991
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PpuMI	RGGWCCY	1 cut(s)	509
Psp5II	RGGWCCY	1 cut(s)	509
Psp6I	CCWGG	2 cut(s)	817, 838
PspGI	CCWGG	2 cut(s)	817, 838
PspN4I	GGNNCC	5 cut(s)	160, 189, 309, 429, 510
PspPI	GGNCC	2 cut(s)	221, 509
PspPPI	RGGWCCY	1 cut(s)	509
PstI	CTGCAG	1 cut(s)	907
PsuI	RGATCY	1 cut(s)	307
PteI	GCGCGC	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	531
SacII	CCGCGG	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	654
SatI	GCNGC	4 cut(s)	437, 903, 966, 990
Sau3AI	GATC	4 cut(s)	307, 457, 724, 802
Sau96I	GGNCC	2 cut(s)	221, 509
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	4 cut(s)	83, 224, 819, 840
SfaNI	GCATC	3 cut(s)	82, 523, 593
SfcI	CTRYAG	1 cut(s)	903
Sfr303I	CCGCGG	1 cut(s)	314
SgrBI	CCGCGG	1 cut(s)	314
SinI	GGWCC	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	6 cut(s)	334, 465, 600, 651, 917, 983
SsiI	CCGC	4 cut(s)	264, 311, 313, 436
SspMI	CTAG	3 cut(s)	413, 752, 1045
StyD4I	CCNGG	4 cut(s)	81, 222, 817, 838
StyI	CCWWGG	2 cut(s)	886, 1016
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	4 cut(s)	355, 598, 782, 834
TasI	AATT	6 cut(s)	334, 465, 600, 651, 917, 983
TauI	GCSGC	1 cut(s)	439
TfiI	GAWTC	3 cut(s)	24, 244, 352
Tru1I	TTAA	1 cut(s)	654
Tru9I	TTAA	1 cut(s)	654
TscAI	CASTG	1 cut(s)	438
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	3 cut(s)	902, 965, 989
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	4 cut(s)	401, 515, 675, 717
TspGWI	ACGGA	2 cut(s)	228, 845
TspRI	CASTG	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	509
XapI	RAATTY	1 cut(s)	917
XceI	RCATGY	1 cut(s)	584
XmnI	GAANNNNTTC	1 cut(s)	715
XspI	CTAG	3 cut(s)	413, 752, 1045
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.