Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004401

Physical Location & Seq

Genomic Coordinates Reverse (-)

25973171 .. 25977205

Gene Structure 4035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00305350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCTTATCTTTCTCTTTTTAACTGAGACTGAACTGGCTCCACTGCGGCCGTTAGTATTAGGTGGTGATCACTCAATTTCGTATCCTGTTGTAAGAGCTGTCTCTGAGAAGCTTGGGGGACCTGTGGACGTACTTCATCTTGATGCCCATCCTGATATTTATCATGCCTTTGAAGGTAATAAATACTCACATGCATCTTCTTTTGCTCGAATTATGGAGGGTGGTTATGCTCGGCGACTTTTGCAGGTTGGTATTCGCTCAATTAACCATGAAGGGCGTGAACAAGGAAAAAGATTTGGTGTTGAGCAATATGAAATGCGAACCTTTTCAAGAGATCGTGACTTTTTGGAAAACCTGAAACTAGGGGAAGGTGTGAAGGGTGTCTATATCTCGATAGATGTAGATTGCCTTGATCCTGCCTTTGCTCCAGGAGTATCACACATCGAGCCAGGGGTCTCTCCTTCCGTGATGTTCTCAACATACTGCACAATCTCCAAGGTGAAGTGGTTGCTGCAGATGTCGTTGAATTCAATCCACAGCGCGATACTGTTGATGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004053 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006560 GO:0006570 GO:0006576 GO:0006591 GO:0006595 GO:0006596 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008783 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009072 GO:0009308 GO:0009309 GO:0009445 GO:0009446 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0016054 GO:0016787 GO:0016810 GO:0016813 GO:0019752 GO:0033388 GO:0033389 GO:0034641 GO:0042401 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044271 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0050897 GO:0051704 GO:0051707 GO:0071704 GO:0097164 GO:0098542 GO:1901360 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko01230 ko05146 map00220 map00330 map01100 map01110 map01130 map01230 map05146

Pfam Domains

Protein Families

Arginase

Protein Analysis

186

Amino Acids

20.69

Weight (kDa)

6.23

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arginase	PF00491	16 - 151	3.1e-41	Arginase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08870 AT4G08870 AT4G08900
fragaria_vesca	FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450
malus_domestica	MD02G1206500.v1.1 MD02G1206600.v1.1 MD07G1119200.v1.1
prunus_persica	Prupe.2G142300_v2.0.a1 Prupe.2G142300_v2.0.a1
pyrus_communis	pycom07g10550
rosa_chinensis	RchiOBHm_Chr1g0349751 RchiOBHm_Chr1g0349761 RchiOBHm_Chr1g0349771
rosa_laevigata	RLG00000028523 RLG00000028524
rosa_multiflora	Rmu_sc0004624.1_g000004 Rmu_sc0004624.1_g000006 Rmu_sc0014735.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305350
rosa_rugosa	Rorug01G0205900
rosa_samantha	Rh1AG223000 Rh1AG223100 Rh1BG189200 Rh1CG207800 Rh1CG207900 Rh1DG218100
rosa_wichuraiana	Rw1G019010 Rw1G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AccII	CGCG	1 cut(s)	542
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	1 cut(s)	407
AcoI	YGGCCR	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	526
AfaI	GTAC	1 cut(s)	132
AgsI	TTSAA	4 cut(s)	173, 330, 526, 531
AjnI	CCWGG	2 cut(s)	427, 448
AluBI	AGCT	2 cut(s)	98, 112
AluI	AGCT	2 cut(s)	98, 112
Alw26I	GTCTC	3 cut(s)	20, 106, 460
AlwI	GGATC	1 cut(s)	407
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	511
ApoI	RAATTY	1 cut(s)	526
Asp700I	GAANNNNTTC	1 cut(s)	325
AspLEI	GCGC	1 cut(s)	542
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	77, 511
AvaII	GGWCC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	498
BccI	CCATC	2 cut(s)	156, 547
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	2 cut(s)	429, 450
BciVI	GTATCC	1 cut(s)	93
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	3 cut(s)	20, 106, 460
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	235
BfuI	GTATCC	1 cut(s)	93
BisI	GCNGC	2 cut(s)	47, 512
BlsI	GCNGC	2 cut(s)	48, 513
Bme1390I	CCNGG	2 cut(s)	429, 450
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	2 cut(s)	39, 120
BmrFI	CCNGG	2 cut(s)	429, 450
BmsI	GCATC	2 cut(s)	133, 203
BpmI	CTGGAG	1 cut(s)	411
BsaBI	GATNNNNATC	2 cut(s)	147, 159
BsaI	GGTCTC	1 cut(s)	460
BsaJI	CCNNGG	2 cut(s)	449, 495
Bse1I	ACTGG	1 cut(s)	39
Bse8I	GATNNNNATC	2 cut(s)	147, 159
BseBI	CCWGG	2 cut(s)	429, 450
BseDI	CCNNGG	2 cut(s)	449, 495
BseGI	GGATG	1 cut(s)	148
BseJI	GATNNNNATC	2 cut(s)	147, 159
BseMII	CTCAG	2 cut(s)	15, 96
BseNI	ACTGG	1 cut(s)	39
BseX3I	CGGCCG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	498
BsgI	GTGCAG	1 cut(s)	469
Bsh1236I	CGCG	1 cut(s)	542
Bsh1285I	CGRYCG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	49
BsiEI	CGRYCG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	132
BsmAI	GTCTC	3 cut(s)	20, 106, 460
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	49
Bso31I	GGTCTC	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	67, 334, 412
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	2 cut(s)	16, 97
BspFNI	CGCG	1 cut(s)	542
BspLI	GGNNCC	2 cut(s)	39, 120
BspMAI	CTGCAG	1 cut(s)	516
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	407
BspTNI	GGTCTC	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	449, 495
BssMI	GATC	3 cut(s)	67, 334, 412
BssT1I	CCWWGG	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	429, 450
Bst4CI	ACNGT	1 cut(s)	549
BstDEI	CTNAG	2 cut(s)	24, 105
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	542
BstHHI	GCGC	1 cut(s)	542
BstKTI	GATC	3 cut(s)	70, 337, 415
BstMAI	GTCTC	3 cut(s)	20, 106, 460
BstMBI	GATC	3 cut(s)	67, 334, 412
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	2 cut(s)	429, 450
BstNSI	RCATGY	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	427, 448
BstSFI	CTRYAG	1 cut(s)	512
BstUI	CGCG	1 cut(s)	542
BstV1I	GCAGC	1 cut(s)	498
BstZI	CGGCCG	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	41
BveI	ACCTGC	1 cut(s)	235
CfoI	GCGC	1 cut(s)	542
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	131
CviAII	CATG	3 cut(s)	164, 191, 269
CviJI	RGCY	5 cut(s)	38, 49, 98, 112, 448
CviKI_1	RGCY	5 cut(s)	38, 49, 98, 112, 448
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	2 cut(s)	24, 105
DpnI	GATC	3 cut(s)	69, 336, 414
DpnII	GATC	3 cut(s)	67, 334, 412
EaeI	YGGCCR	1 cut(s)	47
EagI	CGGCCG	1 cut(s)	47
EclXI	CGGCCG	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	495
Eco31I	GGTCTC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	119
Eco52I	CGGCCG	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	526
EcoRII	CCWGG	2 cut(s)	427, 448
EcoT14I	CCWWGG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	3 cut(s)	167, 194, 272
FaiI	YATR	8 cut(s)	165, 192, 215, 228, 270, 312, 387, 481
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	3 cut(s)	163, 190, 268
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	47, 512
FokI	GGATG	1 cut(s)	135
Fsp4HI	GCNGC	2 cut(s)	47, 512
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	1 cut(s)	541
GluI	GCNGC	2 cut(s)	47, 512
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	542
Hin1II	CATG	3 cut(s)	167, 194, 272
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HindIII	AAGCTT	1 cut(s)	110
HphI	GGTGA	2 cut(s)	77, 511
Hpy166II	GTNNAC	2 cut(s)	127, 281
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	5 cut(s)	140, 152, 330, 338, 391
Hpy8I	GTNNAC	2 cut(s)	127, 281
HpyAV	CCTTC	5 cut(s)	167, 266, 362, 370, 471
HpyCH4III	ACNGT	1 cut(s)	549
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	4 cut(s)	194, 244, 486, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	2 cut(s)	24, 105
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	167, 194, 272
HspAI	GCGC	1 cut(s)	540
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	67, 334, 412
LmnI	GCTCC	2 cut(s)	43, 430
Lsp1109I	GCAGC	1 cut(s)	498
LweI	GCATC	2 cut(s)	133, 203
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	3 cut(s)	69, 336, 414
MboI	GATC	3 cut(s)	67, 334, 412
MboII	GAAGA	1 cut(s)	189
MluCI	AATT	4 cut(s)	75, 210, 261, 526
MnlI	CCTC	1 cut(s)	211
Mph1103I	ATGCAT	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	325
MseI	TTAA	2 cut(s)	20, 264
MslI	CAYNNNNRTG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	429, 450
MvaI	CCWGG	2 cut(s)	429, 450
MvnI	CGCG	1 cut(s)	542
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeII	GATC	3 cut(s)	67, 334, 412
NlaIII	CATG	3 cut(s)	167, 194, 272
NlaIV	GGNNCC	2 cut(s)	39, 120
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	338
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	325
PfoI	TCCNGGA	1 cut(s)	427
PkrI	GCNGC	2 cut(s)	48, 513
PpuMI	RGGWCCY	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	427, 448
PspGI	CCWGG	2 cut(s)	427, 448
PspN4I	GGNNCC	2 cut(s)	39, 120
PspPI	GGNCC	1 cut(s)	119
PspPPI	RGGWCCY	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	516
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	20, 264
SatI	GCNGC	2 cut(s)	47, 512
Sau3AI	GATC	3 cut(s)	67, 334, 412
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	429, 450
SfaNI	GCATC	2 cut(s)	133, 203
SfcI	CTRYAG	1 cut(s)	512
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	4 cut(s)	75, 210, 261, 526
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	2 cut(s)	427, 448
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	549
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	3 cut(s)	208, 392, 444
TasI	AATT	4 cut(s)	75, 210, 261, 526
TauI	GCSGC	1 cut(s)	49
Tru1I	TTAA	2 cut(s)	20, 264
Tru9I	TTAA	2 cut(s)	20, 264
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	1 cut(s)	511
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	3 cut(s)	125, 285, 327
TspGWI	ACGGA	1 cut(s)	454
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	526
XceI	RCATGY	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	325
XspI	CTAG	1 cut(s)	362
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.