Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004401

Physical Location & Seq

Genomic Coordinates Forward (+)

42824200 .. 42826193

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57572

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCAATAATCGGGAGGAGAGGAATCCACTACTTGCAGAAACTAAACTCTCCGAACGTCCCAACTGATTTGATACACAAGGGTCAGAACAGGGTCATAGATGCCTCCCTCACTCTTATTCGTGAGAAAGCCAAGCTCAAGGGAGAGCTGGTGCGTGCTTTAGGTGGGGCCGTAGCGTCTTCTTCGCTTCTGGGGGTTCCTTTGGGACATAACTCGTCGTTTCTGCAAGGCCCGGCTTTTGCTCCTCCGAGGATTCGGGAGGCTATTTGGTGCGGGAGCACAAACTCTACAACTGAAGAAGGGAAGGAACTGAAGGACCCGCGGGTGCTAACTGATGTGGGCGATGTGCCTGTGCAAGAGATTCGAGATTGTGGAGTGGATGATGATAGATTGATGAATGTGATAGGGGAGTCTGTCAAGCTAGTGATGGAAGAGCTTTTTAGGACATGCTTTGAAGCTGGCTTAGCACAGTTCAAAGTTTTAAACACTTATAAACTATGCCATCCAGGTCCATGCTTTGGAGTATGCTTTTATTATGCCGTCATCCCTGCAGTATATATGATAGCATTCAGTTCAGGGCCACACAAACTATGGGCTACAGGATCACTGGATGCTTATCTTTCTCTTTTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004053 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006560 GO:0006570 GO:0006576 GO:0006591 GO:0006595 GO:0006596 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008783 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009072 GO:0009308 GO:0009309 GO:0009445 GO:0009446 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0016054 GO:0016787 GO:0016810 GO:0016813 GO:0019752 GO:0033388 GO:0033389 GO:0034641 GO:0042401 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044271 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0050897 GO:0051704 GO:0051707 GO:0071704 GO:0097164 GO:0098542 GO:1901360 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko01230 ko05146 map00220 map00330 map01100 map01110 map01130 map01230 map05146

Pfam Domains

Protein Families

Arginase

Protein Analysis

211

Amino Acids

23.03

Weight (kDa)

7.62

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08870 AT4G08870 AT4G08900
fragaria_vesca	FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450 FvH4_7g11450
malus_domestica	MD02G1206500.v1.1 MD02G1206600.v1.1 MD07G1119200.v1.1
prunus_persica	Prupe.2G142300_v2.0.a1 Prupe.2G142300_v2.0.a1
pyrus_communis	pycom07g10550
rosa_chinensis	RchiOBHm_Chr1g0349751 RchiOBHm_Chr1g0349761 RchiOBHm_Chr1g0349771
rosa_laevigata	RLG00000028523 RLG00000028524
rosa_multiflora	Rmu_sc0004624.1_g000004 Rmu_sc0004624.1_g000006 Rmu_sc0014735.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305350
rosa_rugosa	Rorug01G0205900
rosa_samantha	Rh1AG223000 Rh1AG223100 Rh1BG189200 Rh1CG207800 Rh1CG207900 Rh1DG218100
rosa_wichuraiana	Rw1G019010 Rw1G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	492
AccB7I	CCANNNNNTGG	1 cut(s)	518
AccII	CGCG	1 cut(s)	322
AciI	CCGC	3 cut(s)	273, 320, 322
AclWI	GGATC	1 cut(s)	610
AcuI	CTGAAG	2 cut(s)	315, 332
AfiI	CCNNNNNNNGG	1 cut(s)	518
AgsI	TTSAA	2 cut(s)	455, 475
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	5 cut(s)	136, 148, 421, 436, 458
AluI	AGCT	5 cut(s)	136, 148, 421, 436, 458
Alw21I	GWGCWC	1 cut(s)	281
AlwI	GGATC	1 cut(s)	610
AoxI	GGCC	3 cut(s)	168, 229, 578
AspS9I	GGNCC	5 cut(s)	168, 230, 316, 509, 578
AsuC2I	CCSGG	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	316, 509
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	281
BccI	CCATC	2 cut(s)	421, 510
BceAI	ACGGC	2 cut(s)	155, 524
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	1 cut(s)	507
BcnI	CCSGG	1 cut(s)	233
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	2 cut(s)	549, 597
BlpI	GCTNAGC	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	233, 507
Bme18I	GGWCC	2 cut(s)	316, 509
BmgT120I	GGNCC	5 cut(s)	168, 230, 316, 509, 578
BmiI	GGNNCC	3 cut(s)	169, 198, 318
BmrFI	CCNGG	2 cut(s)	233, 507
BmsI	GCATC	2 cut(s)	91, 601
BpiI	GAAGAC	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	463
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	233
BsaBI	GATNNNNATC	1 cut(s)	615
BsaJI	CCNNGG	2 cut(s)	248, 320
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	612
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	2 cut(s)	248, 320
BseGI	GGATG	4 cut(s)	385, 502, 543, 616
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	2 cut(s)	31, 234
Bsh1236I	CGCG	1 cut(s)	322
BshFI	GGCC	3 cut(s)	170, 231, 580
BsiHKAI	GWGCWC	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	2 cut(s)	44, 219
BslI	CCNNNNNNNGG	1 cut(s)	518
BsmFI	GGGAC	2 cut(s)	44, 219
BsmI	GAATGC	1 cut(s)	566
BsnI	GGCC	3 cut(s)	170, 231, 580
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	1 cut(s)	602
Bsp1720I	GCTNAGC	1 cut(s)	463
BspACI	CCGC	3 cut(s)	273, 320, 322
BspANI	GGCC	3 cut(s)	170, 231, 580
BspFNI	CGCG	1 cut(s)	322
BspLI	GGNNCC	3 cut(s)	169, 198, 318
BspMAI	CTGCAG	1 cut(s)	553
BspPI	GGATC	1 cut(s)	610
BspQI	GCTCTTC	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	248, 320
BssMI	GATC	1 cut(s)	602
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	471
Bst6I	CTCTTC	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	156, 460
BstDEI	CTNAG	1 cut(s)	463
BstDSI	CCRYGG	1 cut(s)	320
BstF5I	GGATG	4 cut(s)	385, 502, 543, 616
BstFNI	CGCG	1 cut(s)	322
BstKTI	GATC	1 cut(s)	605
BstMBI	GATC	1 cut(s)	602
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	1 cut(s)	507
BstNSI	RCATGY	1 cut(s)	450
BstSCI	CCNGG	2 cut(s)	231, 505
BstSFI	CTRYAG	2 cut(s)	549, 597
BstUI	CGCG	1 cut(s)	322
BstV2I	GAAGAC	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	170, 231, 580
BtgI	CCRYGG	1 cut(s)	320
BtgZI	GCGATG	1 cut(s)	357
BtsCI	GGATG	4 cut(s)	385, 502, 543, 616
BtsIMutI	CAGTG	1 cut(s)	605
Cac8I	GCNNGC	2 cut(s)	156, 460
Cfr13I	GGNCC	5 cut(s)	168, 230, 316, 509, 578
Cfr42I	CCGCGG	1 cut(s)	323
CseI	GACGC	1 cut(s)	165
CviAII	CATG	2 cut(s)	447, 513
DdeI	CTNAG	1 cut(s)	463
DpnI	GATC	1 cut(s)	604
DpnII	GATC	1 cut(s)	602
DraI	TTTAAA	2 cut(s)	483, 630
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco47I	GGWCC	2 cut(s)	316, 509
Eco57I	CTGAAG	2 cut(s)	315, 332
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	505
FaeI	CATG	2 cut(s)	450, 516
FaqI	GGGAC	2 cut(s)	44, 219
FatI	CATG	2 cut(s)	446, 512
FauI	CCCGC	3 cut(s)	266, 315, 327
FokI	GGATG	4 cut(s)	392, 489, 530, 623
FspBI	CTAG	1 cut(s)	422
HaeIII	GGCC	3 cut(s)	170, 231, 580
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	450, 516
HinfI	GANTC	4 cut(s)	24, 253, 361, 410
HpaII	CCGG	1 cut(s)	233
Hpy188I	TCNGA	3 cut(s)	54, 87, 249
Hpy188III	TCNNGA	4 cut(s)	13, 122, 257, 365
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	3 cut(s)	293, 298, 307
HpyCH4III	ACNGT	1 cut(s)	471
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	4 cut(s)	37, 226, 355, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	1 cut(s)	463
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	450, 516
KspI	CCGCGG	1 cut(s)	323
Kzo9I	GATC	1 cut(s)	602
LguI	GCTCTTC	1 cut(s)	426
LmnI	GCTCC	2 cut(s)	247, 276
LweI	GCATC	2 cut(s)	91, 601
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	57
MalI	GATC	1 cut(s)	604
MboI	GATC	1 cut(s)	602
MboII	GAAGA	4 cut(s)	171, 174, 308, 443
MhlI	GDGCHC	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	419
MnlI	CCTC	7 cut(s)	9, 14, 115, 119, 243, 253, 255
MseI	TTAA	2 cut(s)	482, 629
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	233, 507
Mva1269I	GAATGC	1 cut(s)	566
MvaI	CCWGG	1 cut(s)	507
MvnI	CGCG	1 cut(s)	322
MwoI	GCNNNNNNNGC	1 cut(s)	464
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	1 cut(s)	602
NlaIII	CATG	2 cut(s)	450, 516
NlaIV	GGNNCC	3 cut(s)	169, 198, 318
NspI	RCATGY	1 cut(s)	450
PciSI	GCTCTTC	1 cut(s)	426
PctI	GAATGC	1 cut(s)	566
PfeI	GAWTC	3 cut(s)	24, 253, 361
PflMI	CCANNNNNTGG	1 cut(s)	518
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PpuMI	RGGWCCY	1 cut(s)	316
PsiI	TTATAA	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	3 cut(s)	169, 198, 318
PspPI	GGNCC	5 cut(s)	168, 230, 316, 509, 578
PspPPI	RGGWCCY	1 cut(s)	316
PstI	CTGCAG	1 cut(s)	553
SacII	CCGCGG	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	426
SaqAI	TTAA	2 cut(s)	482, 629
Sau3AI	GATC	1 cut(s)	602
Sau96I	GGNCC	5 cut(s)	168, 230, 316, 509, 578
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	2 cut(s)	233, 507
SduI	GDGCHC	1 cut(s)	281
SetI	ASST	8 cut(s)	60, 138, 150, 166, 423, 438, 460, 511
SfaNI	GCATC	2 cut(s)	91, 601
SfcI	CTRYAG	2 cut(s)	549, 597
Sfr303I	CCGCGG	1 cut(s)	323
SgrBI	CCGCGG	1 cut(s)	323
SinI	GGWCC	2 cut(s)	316, 509
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SsiI	CCGC	3 cut(s)	273, 320, 322
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	231, 505
TaaI	ACNGT	1 cut(s)	471
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	364
TfiI	GAWTC	3 cut(s)	24, 253, 361
Tru1I	TTAA	2 cut(s)	482, 629
Tru9I	TTAA	2 cut(s)	482, 629
TscAI	CASTG	1 cut(s)	612
TspDTI	ATGAA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	612
Van91I	CCANNNNNTGG	1 cut(s)	518
VpaK11BI	GGWCC	2 cut(s)	316, 509
XceI	RCATGY	1 cut(s)	450
XcmI	CCANNNNNNNNNTGG	1 cut(s)	588
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.