Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006058

Physical Location & Seq

Genomic Coordinates Forward (+)

5812335 .. 5813642

Gene Structure 1308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G09110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGACTATATTCGCGAGAGATCTCATCTATAGGATCGAAACGAAGGTTTTGTTGCCGCTCTTCCTTGTCCATTTGTTACCTTATGTAACATGCCAGCAAGAGTCAGAATCCGTAGACCGCAATAGAAAAACCAATTTCCCAACGGAAACGGTAATCGCAATCATTGTGCTTGCAATATTTATCTCATTAAGCATGGTCGCTTGTTTCTTGCACAAAACATTCTATAGAGCAGAGGTTGAGGCGGCAAGCCAAGAAGTGTTTCACAGTAGAGCGAGGCGTGGGCTCGAGAAGGAACTCGTTGAGTCCTTTCCAATTTTCCTCTATTCGGAGGTTAAAGGGCTCAAGATAGGCAAAGGCGGAGTAGAATGTGCAATTTGTCTAAGCGAGTTTGTGGATAAAGAAACACTACGTTGGATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATTGATGTGTGGCTCTCTTCTCAGTCCACATGTCCGGCTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAGTTATCCATATCCGATCACGGATCTTGAAACGGGAAATGAACAAAGAGATGAACATTCATTGCTTCAACTAGGTACGAATCTAGATCGATTCACACTTCAGTTACCAGAGGAGATGCAAAGACAATTGGTTAGCTTGAATCTGATAAGGACAAGCAACATGACCTTACCTCGAGCCATGAGTTCGAGACAGGGCTACAGAAGCGGTTTCTCTCATGGACGACAAACACTTCGGCGGGCCATATCTATGTCTCTAAGTTTCTCTTTACAAGCTGCTTCTGTTCGTTCCACAGTTGGCAGAGACGATCTAGTGCTAGAGACTTCCCAAGCTAAGGACAAAGATTTATGTGAACAGTCGTTCCAACACCTCATGCCAGAGAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009814 GO:0009816 GO:0009987 GO:0009991 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033273 GO:0033591 GO:0033993 GO:0034284 GO:0036211 GO:0042221 GO:0042493 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071496 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

302

Amino Acids

34.32

Weight (kDa)

7.07

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	122 - 165	7.8e-14	Ring finger domain
zf-RING_11	PF17123	122 - 151	1.5e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	122 - 164	6.8e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	122 - 165	7.9e-07	zinc-RING finger domain
zf-C3HC4	PF00097	123 - 164	7.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	123 - 162	1e-06	RING-type zinc-finger
zf-rbx1	PF12678	137 - 165	7.4e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09110 AT4G09120 AT4G09130
fragaria_vesca	FvH4_1g20110
malus_domestica	MD15G1316800.v1.1
prunus_persica	Prupe.6G195100_v2.0.a1
pyrus_communis	pycom01g06440 pycom15g27950
rosa_chinensis	RchiOBHm_Chr2g0112141 RchiOBHm_Chr7g0233001
rosa_laevigata	RLG00000001306 RLG00000017954
rosa_multiflora	Rmu_sc0000360.1_g000026 Rmu_sc0001294.1_g000027 Rmu_ssc0000018.1_g000029
rosa_roxburghii	Rroxscaffold_2G00131730
rosa_rugosa	Rorug02G0178700
rosa_samantha	Rh2AG230700 Rh2BG244000 Rh2CG235300 Rh2DG238600 Rh7AG432600 Rh7BG405400 Rh7CG451900 Rh7DG421400
rosa_wichuraiana	Rw2G017900 Rw7G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	58
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	14
AciI	CCGC	6 cut(s)	56, 118, 242, 357, 726, 757
AclWI	GGATC	2 cut(s)	41, 552
AcuI	CTGAAG	1 cut(s)	605
AfaI	GTAC	1 cut(s)	598
AfiI	CCNNNNNNNGG	2 cut(s)	325, 853
AflIII	ACRYGT	1 cut(s)	479
AgsI	TTSAA	3 cut(s)	551, 590, 661
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AloI	GAACNNNNNNTCC	2 cut(s)	864, 896
AluBI	AGCT	3 cut(s)	657, 794, 851
AluI	AGCT	3 cut(s)	657, 794, 851
Alw26I	GTCTC	5 cut(s)	510, 703, 777, 816, 833
AlwI	GGATC	2 cut(s)	41, 552
Ama87I	CYCGRG	2 cut(s)	284, 693
AoxI	GGCC	1 cut(s)	759
ApeKI	GCWGC	1 cut(s)	794
ArsI	GACNNNNNNTTYG	2 cut(s)	735, 767
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	759
AsuC2I	CCSGG	1 cut(s)	516
AsuHPI	GGTGA	1 cut(s)	530
AvaI	CYCGRG	2 cut(s)	284, 693
BanII	GRGCYC	2 cut(s)	285, 342
BbvI	GCAGC	1 cut(s)	781
BcnI	CCSGG	1 cut(s)	516
BcoDI	GTCTC	5 cut(s)	510, 703, 777, 816, 833
BfaI	CTAG	4 cut(s)	593, 605, 830, 836
BfmI	CTRYAG	3 cut(s)	28, 223, 718
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	3 cut(s)	56, 243, 795
BlsI	GCNGC	3 cut(s)	57, 244, 796
Bme1390I	CCNGG	1 cut(s)	516
BmeT110I	CYCGRG	2 cut(s)	284, 693
BmgT120I	GGNCC	1 cut(s)	759
BmrFI	CCNGG	1 cut(s)	516
BmsI	GCATC	2 cut(s)	405, 627
Bpu10I	CCTNAGC	1 cut(s)	852
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	516
Bsa29I	ATCGAT	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 853
Bse3DI	GCAATG	1 cut(s)	581
BseCI	ATCGAT	1 cut(s)	610
BseGI	GGATG	1 cut(s)	420
BseLI	CCNNNNNNNGG	2 cut(s)	325, 853
BseMI	GCAATG	1 cut(s)	581
BseMII	CTCAG	1 cut(s)	485
BseRI	GAGGAG	1 cut(s)	647
BseXI	GCAGC	1 cut(s)	781
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	761
BshVI	ATCGAT	1 cut(s)	610
BsiHKCI	CYCGRG	2 cut(s)	284, 693
BsiSI	CCGG	2 cut(s)	485, 516
BslI	CCNNNNNNNGG	2 cut(s)	325, 853
BsmAI	GTCTC	5 cut(s)	510, 703, 777, 816, 833
BsmBI	CGTCTC	1 cut(s)	816
BsnI	GGCC	1 cut(s)	761
BsoBI	CYCGRG	2 cut(s)	284, 693
Bsp1286I	GDGCHC	2 cut(s)	285, 342
Bsp143I	GATC	6 cut(s)	19, 33, 537, 544, 607, 826
Bsp68I	TCGCGA	1 cut(s)	14
BspACI	CCGC	6 cut(s)	56, 118, 242, 357, 726, 757
BspANI	GGCC	1 cut(s)	761
BspCNI	CTCAG	1 cut(s)	484
BspDI	ATCGAT	1 cut(s)	610
BspFNI	CGCG	1 cut(s)	14
BspPI	GGATC	2 cut(s)	41, 552
BspQI	GCTCTTC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	581
BssMI	GATC	6 cut(s)	19, 33, 537, 544, 607, 826
Bst4CI	ACNGT	4 cut(s)	151, 266, 814, 876
Bst6I	CTCTTC	2 cut(s)	65, 472
BstC8I	GCNNGC	4 cut(s)	95, 171, 247, 759
BstDEI	CTNAG	4 cut(s)	380, 471, 776, 852
BstF5I	GGATG	1 cut(s)	420
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	6 cut(s)	22, 36, 540, 547, 610, 829
BstMAI	GTCTC	5 cut(s)	510, 703, 777, 816, 833
BstMBI	GATC	6 cut(s)	19, 33, 537, 544, 607, 826
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 723
BstNSI	RCATGY	2 cut(s)	93, 483
BstSCI	CCNGG	1 cut(s)	514
BstSFI	CTRYAG	3 cut(s)	28, 223, 718
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	781
BstX2I	RGATCY	2 cut(s)	19, 544
BstYI	RGATCY	2 cut(s)	19, 544
Bsu15I	ATCGAT	1 cut(s)	610
BsuRI	GGCC	1 cut(s)	761
BsuTUI	ATCGAT	1 cut(s)	610
BtsCI	GGATG	1 cut(s)	420
BtuMI	TCGCGA	1 cut(s)	14
Cac8I	GCNNGC	4 cut(s)	95, 171, 247, 759
Cfr13I	GGNCC	1 cut(s)	759
ClaI	ATCGAT	1 cut(s)	610
Csp6I	GTAC	1 cut(s)	597
CviAII	CATG	8 cut(s)	90, 193, 440, 480, 682, 700, 737, 892
CviQI	GTAC	1 cut(s)	597
DdeI	CTNAG	4 cut(s)	380, 471, 776, 852
DpnI	GATC	6 cut(s)	21, 35, 539, 546, 609, 828
DpnII	GATC	6 cut(s)	19, 33, 537, 544, 607, 826
Eam1104I	CTCTTC	2 cut(s)	65, 472
EarI	CTCTTC	2 cut(s)	65, 472
EciI	GGCGGA	1 cut(s)	372
Eco24I	GRGCYC	2 cut(s)	285, 342
Eco57I	CTGAAG	1 cut(s)	605
Eco88I	CYCGRG	2 cut(s)	284, 693
EcoT38I	GRGCYC	2 cut(s)	285, 342
Esp3I	CGTCTC	1 cut(s)	816
FaeI	CATG	8 cut(s)	93, 196, 443, 483, 685, 703, 740, 895
FalI	AAGNNNNNCTT	2 cut(s)	769, 801
FatI	CATG	8 cut(s)	89, 192, 439, 479, 681, 699, 736, 891
FauI	CCCGC	1 cut(s)	750
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	3 cut(s)	56, 243, 795
FokI	GGATG	1 cut(s)	427
FriOI	GRGCYC	2 cut(s)	285, 342
Fsp4HI	GCNGC	3 cut(s)	56, 243, 795
FspBI	CTAG	4 cut(s)	593, 605, 830, 836
GluI	GCNGC	3 cut(s)	56, 243, 795
HaeIII	GGCC	1 cut(s)	761
HapII	CCGG	2 cut(s)	485, 516
Hin1II	CATG	8 cut(s)	93, 196, 443, 483, 685, 703, 740, 895
HinfI	GANTC	6 cut(s)	101, 107, 302, 601, 612, 661
HpaII	CCGG	2 cut(s)	485, 516
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	3 cut(s)	115, 477, 872
Hpy188I	TCNGA	4 cut(s)	106, 328, 537, 666
Hpy188III	TCNNGA	6 cut(s)	13, 286, 343, 548, 605, 708
Hpy8I	GTNNAC	3 cut(s)	115, 477, 872
HpyAV	CCTTC	3 cut(s)	37, 283, 895
HpyCH4III	ACNGT	4 cut(s)	151, 266, 814, 876
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	6 cut(s)	173, 211, 371, 450, 497, 640
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 723
HpyF3I	CTNAG	4 cut(s)	380, 471, 776, 852
HpySE526I	ACGT	1 cut(s)	409
Hsp92II	CATG	8 cut(s)	93, 196, 443, 483, 685, 703, 740, 895
Kzo9I	GATC	6 cut(s)	19, 33, 537, 544, 607, 826
LguI	GCTCTTC	1 cut(s)	65
LpnPI	CCDG	5 cut(s)	107, 498, 529, 642, 698
Lsp1109I	GCAGC	1 cut(s)	781
LweI	GCATC	2 cut(s)	405, 627
MaeI	CTAG	4 cut(s)	593, 605, 830, 836
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	3 cut(s)	75, 85, 624
MalI	GATC	6 cut(s)	21, 35, 539, 546, 609, 828
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	6 cut(s)	19, 33, 537, 544, 607, 826
MboII	GAAGA	2 cut(s)	52, 459
MfeI	CAATTG	1 cut(s)	647
MflI	RGATCY	2 cut(s)	19, 544
MhlI	GDGCHC	2 cut(s)	285, 342
MluCI	AATT	5 cut(s)	133, 312, 372, 445, 647
MlyI	GAGTC	2 cut(s)	110, 311
MmeI	TCCRAC	2 cut(s)	392, 907
MnlI	CCTC	9 cut(s)	226, 232, 267, 322, 329, 429, 625, 702, 899
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	2 cut(s)	188, 333
MslI	CAYNNNNRTG	2 cut(s)	455, 767
MspI	CCGG	2 cut(s)	485, 516
MspR9I	CCNGG	1 cut(s)	516
MunI	CAATTG	1 cut(s)	647
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	494, 723
NciI	CCSGG	1 cut(s)	516
NdeII	GATC	6 cut(s)	19, 33, 537, 544, 607, 826
NlaIII	CATG	8 cut(s)	93, 196, 443, 483, 685, 703, 740, 895
NruI	TCGCGA	1 cut(s)	14
NspI	RCATGY	2 cut(s)	93, 483
PaeR7I	CTCGAG	2 cut(s)	284, 693
PciI	ACATGT	1 cut(s)	479
PciSI	GCTCTTC	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	4 cut(s)	107, 601, 612, 661
PkrI	GCNGC	3 cut(s)	57, 244, 796
PleI	GAGTC	2 cut(s)	109, 310
PpsI	GAGTC	2 cut(s)	109, 310
PscI	ACATGT	1 cut(s)	479
PspPI	GGNCC	1 cut(s)	759
PspXI	VCTCGAGB	1 cut(s)	693
PsuI	RGATCY	2 cut(s)	19, 544
RruI	TCGCGA	1 cut(s)	14
RsaI	GTAC	1 cut(s)	598
RsaNI	GTAC	1 cut(s)	597
RseI	CAYNNNNRTG	2 cut(s)	455, 767
SapI	GCTCTTC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	188, 333
SatI	GCNGC	3 cut(s)	56, 243, 795
Sau3AI	GATC	6 cut(s)	19, 33, 537, 544, 607, 826
Sau96I	GGNCC	1 cut(s)	759
SchI	GAGTC	2 cut(s)	110, 311
ScrFI	CCNGG	1 cut(s)	516
SduI	GDGCHC	2 cut(s)	285, 342
SfaNI	GCATC	2 cut(s)	405, 627
SfcI	CTRYAG	3 cut(s)	28, 223, 718
Sfr274I	CTCGAG	2 cut(s)	284, 693
SlaI	CTCGAG	2 cut(s)	284, 693
SmiMI	CAYNNNNRTG	2 cut(s)	455, 767
SmlI	CTYRAG	3 cut(s)	284, 341, 693
SmoI	CTYRAG	3 cut(s)	284, 341, 693
Sse9I	AATT	5 cut(s)	133, 312, 372, 445, 647
SsiI	CCGC	6 cut(s)	56, 118, 242, 357, 726, 757
SspI	AATATT	1 cut(s)	177
SspMI	CTAG	4 cut(s)	593, 605, 830, 836
StyD4I	CCNGG	1 cut(s)	514
TaaI	ACNGT	4 cut(s)	151, 266, 814, 876
TaiI	ACGT	1 cut(s)	412
TaqI	TCGA	5 cut(s)	36, 285, 610, 694, 707
TasI	AATT	5 cut(s)	133, 312, 372, 445, 647
TauI	GCSGC	2 cut(s)	58, 245
TfiI	GAWTC	4 cut(s)	107, 601, 612, 661
Tru1I	TTAA	2 cut(s)	188, 333
Tru9I	TTAA	2 cut(s)	188, 333
TseI	GCWGC	1 cut(s)	794
TspDTI	ATGAA	3 cut(s)	570, 576, 588
TspGWI	ACGGA	3 cut(s)	100, 158, 557
XbaI	TCTAGA	1 cut(s)	604
XceI	RCATGY	2 cut(s)	93, 483
XhoI	CTCGAG	2 cut(s)	284, 693
XmiI	GTMKAC	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	4 cut(s)	593, 605, 830, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.