Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006058

Physical Location & Seq

Genomic Coordinates Forward (+)

5813998 .. 5815119

Gene Structure 1122 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G09120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAATATCTTCACGAGATATCACCTTCCTCGGGTCGTATCAGGTGTTATATTGCCGCTCTTCCTTTTCCATCTTTTGCCTTACGTTACATGTCAGCAAGAGTCGGTACCAACAAACAGCATTAGACAAACCAATCTCTCAGCTGACTCAATAATTGCAATCGTTGTGCTTGCAATATTTATATCATTAGGCATGGTCTCTTGTTGCTTGCACTGCATATTCTATAGGGAAGAGATTGGGGCGGCAGGTCAAGATGTATTACACAGTAGAGCAAGGCGTGGGCTCGAGAAGGAAGTCATCGAGTCTTTTCCAACTTTCCTTTATTCAGAAGTTAAAGGGCTCAAGATAGGCAAAGGCGGTGTAGAATGTGCAATTTGTCTGAGCGAGTTTGAGGATCAAGAAACGCTACGTTGGATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCTTGGTCCACATGTCCGGTTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAGTTATCCATATCTGAACATGGATGTTGAAACGGGAGGTGTTCAAAAACTCCCCAATGAGAGAAGCTTGACAGGTAATAGTGTAACAACTAGATCGAGATCTACAGGGTTATTGTCGAGCTGGCGTATGGCTGAGATATTCGTCCCTAGATCTCATTCGACCGGACATTCATTGGTTCAACAACTAGGTGAAAATCTAGACCGGTTCACATTGCAATTACCAGAGGAGGTACAAAGACAATTAGTTAGCTTGAATCTGATAAGGAGAAGCCACATAGTCTTACCTCAAGCCGTGAGTTCGAGGCAGGGCTACAGGAGCGGGAGCGTTGGGAGCGAGAGAGGTGGTTTCTCTCAGGGACGGCAAACGCACCGAAGGGCCTTATCTATGTCTTTCTCTTTCTCTTTCCAAACTGCTTCTGTTCGGTCAATACATGACATGAATGATCAAGCCCAAGCTAAGGACAAATATTTTGGTGAACGGTCATTTGAACGCCTTATGCCAGAGGAGAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009814 GO:0009816 GO:0009987 GO:0009991 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033273 GO:0033591 GO:0033993 GO:0034284 GO:0036211 GO:0042221 GO:0042493 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071496 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

345

Amino Acids

38.8

Weight (kDa)

8.52

Isoelectric Point (pI)

60.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	122 - 165	2.1e-13	Ring finger domain
zf-RING_11	PF17123	122 - 151	8.7e-12	RING-like zinc finger
zf-C3HC4_2	PF13923	122 - 164	3e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	122 - 165	2.1e-06	zinc-RING finger domain
zf-C3HC4	PF00097	123 - 164	1.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	123 - 165	2.3e-06	RING-H2 zinc finger domain
zf-RING_UBOX	PF13445	123 - 158	2.3e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09110 AT4G09120 AT4G09130
fragaria_vesca	FvH4_1g20110
malus_domestica	MD15G1316800.v1.1
prunus_persica	Prupe.6G195100_v2.0.a1
pyrus_communis	pycom01g06440 pycom15g27950
rosa_chinensis	RchiOBHm_Chr2g0112141 RchiOBHm_Chr7g0233001
rosa_laevigata	RLG00000001306 RLG00000017954
rosa_multiflora	Rmu_sc0000360.1_g000026 Rmu_sc0001294.1_g000027 Rmu_ssc0000018.1_g000029
rosa_roxburghii	Rroxscaffold_2G00131730
rosa_rugosa	Rorug02G0178700
rosa_samantha	Rh2AG230700 Rh2BG244000 Rh2CG235300 Rh2DG238600 Rh7AG432600 Rh7BG405400 Rh7CG451900 Rh7DG421400
rosa_wichuraiana	Rw2G017900 Rw7G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	236
Acc65I	GGTACC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	106
AccBSI	CCGCTC	2 cut(s)	58, 840
AciI	CCGC	4 cut(s)	56, 242, 357, 840
AclWI	GGATC	1 cut(s)	402
AfaI	GTAC	2 cut(s)	108, 753
AfiI	CCNNNNNNNGG	2 cut(s)	31, 979
AflIII	ACRYGT	2 cut(s)	89, 479
AgeI	ACCGGT	1 cut(s)	723
AgsI	TTSAA	5 cut(s)	551, 566, 701, 775, 1010
AluBI	AGCT	5 cut(s)	143, 588, 642, 771, 977
AluI	AGCT	5 cut(s)	143, 588, 642, 771, 977
Alw26I	GTCTC	2 cut(s)	202, 510
AlwI	GGATC	1 cut(s)	402
Ama87I	CYCGRG	2 cut(s)	30, 284
AoxI	GGCC	1 cut(s)	897
ArsI	GACNNNNNNTTYG	2 cut(s)	974, 1006
AsiGI	ACCGGT	1 cut(s)	723
Asp700I	GAANNNNTTC	1 cut(s)	8
Asp718I	GGTACC	1 cut(s)	106
AspS9I	GGNCC	2 cut(s)	474, 897
AsuC2I	CCSGG	1 cut(s)	516
AsuHPI	GGTGA	4 cut(s)	14, 530, 722, 1007
AvaI	CYCGRG	2 cut(s)	30, 284
AvaII	GGWCC	1 cut(s)	474
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	2 cut(s)	285, 342
BauI	CACGAG	1 cut(s)	13
BccI	CCATC	1 cut(s)	78
BceAI	ACGGC	2 cut(s)	797, 896
BclI	TGATCA	1 cut(s)	964
BcnI	CCSGG	1 cut(s)	516
BcoDI	GTCTC	2 cut(s)	202, 510
BfaI	CTAG	4 cut(s)	612, 669, 707, 719
BfmI	CTRYAG	3 cut(s)	223, 624, 832
BfuAI	ACCTGC	1 cut(s)	236
BglII	AGATCT	2 cut(s)	620, 671
BisI	GCNGC	2 cut(s)	56, 243
BlsI	GCNGC	2 cut(s)	57, 244
Bme1390I	CCNGG	1 cut(s)	516
Bme18I	GGWCC	1 cut(s)	474
BmeT110I	CYCGRG	2 cut(s)	30, 284
BmgT120I	GGNCC	2 cut(s)	474, 897
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	516
BmsI	GCATC	2 cut(s)	405, 459
Bpu10I	CCTNAGC	1 cut(s)	978
BpuEI	CTTGAG	2 cut(s)	326, 792
BpuMI	CCSGG	1 cut(s)	516
Bsa29I	ATCGAT	1 cut(s)	453
BsaBI	GATNNNNATC	1 cut(s)	619
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	3 cut(s)	484, 683, 723
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 979
Bse118I	RCCGGY	1 cut(s)	723
Bse3DI	GCAATG	1 cut(s)	731
Bse8I	GATNNNNATC	1 cut(s)	619
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	2 cut(s)	420, 550
BseJI	GATNNNNATC	1 cut(s)	619
BseLI	CCNNNNNNNGG	2 cut(s)	31, 979
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	4 cut(s)	153, 371, 645, 887
BseRI	GAGGAG	1 cut(s)	761
Bsh1285I	CGRYCG	1 cut(s)	684
BshFI	GGCC	1 cut(s)	899
BshNI	GGYRCC	1 cut(s)	106
BshTI	ACCGGT	1 cut(s)	723
BshVI	ATCGAT	1 cut(s)	453
BsiEI	CGRYCG	1 cut(s)	684
BsiHKCI	CYCGRG	2 cut(s)	30, 284
BsiSI	CCGG	4 cut(s)	485, 516, 684, 724
BslFI	GGGAC	2 cut(s)	650, 891
BslI	CCNNNNNNNGG	2 cut(s)	31, 979
BsmAI	GTCTC	2 cut(s)	202, 510
BsmFI	GGGAC	2 cut(s)	650, 891
BsnI	GGCC	1 cut(s)	899
Bso31I	GGTCTC	1 cut(s)	202
BsoBI	CYCGRG	2 cut(s)	30, 284
Bsp1286I	GDGCHC	2 cut(s)	285, 342
Bsp143I	GATC	5 cut(s)	394, 614, 620, 671, 964
BspACI	CCGC	4 cut(s)	56, 242, 357, 840
BspANI	GGCC	1 cut(s)	899
BspCNI	CTCAG	4 cut(s)	152, 372, 646, 886
BspDI	ATCGAT	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	108
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	402
BspQI	GCTCTTC	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	202
BsrBI	CCGCTC	2 cut(s)	58, 840
BsrDI	GCAATG	1 cut(s)	731
BsrFI	RCCGGY	1 cut(s)	723
BssAI	RCCGGY	1 cut(s)	723
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	5 cut(s)	394, 614, 620, 671, 964
BssSI	CACGAG	1 cut(s)	13
Bst2BI	CACGAG	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	266, 1002
Bst6I	CTCTTC	3 cut(s)	65, 225, 472
BstC8I	GCNNGC	3 cut(s)	171, 209, 644
BstDEI	CTNAG	5 cut(s)	139, 380, 654, 873, 978
BstF5I	GGATG	2 cut(s)	420, 550
BstKTI	GATC	5 cut(s)	397, 617, 623, 674, 967
BstMAI	GTCTC	2 cut(s)	202, 510
BstMBI	GATC	5 cut(s)	394, 614, 620, 671, 964
BstMCI	CGRYCG	1 cut(s)	684
BstMWI	GCNNNNNNNGC	3 cut(s)	213, 837, 852
BstNSI	RCATGY	2 cut(s)	93, 483
BstSCI	CCNGG	1 cut(s)	514
BstSFI	CTRYAG	3 cut(s)	223, 624, 832
BstX2I	RGATCY	2 cut(s)	620, 671
BstYI	RGATCY	2 cut(s)	620, 671
Bsu15I	ATCGAT	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	899
BsuTUI	ATCGAT	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	420, 550
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	211
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	3 cut(s)	171, 209, 644
Cfr10I	RCCGGY	1 cut(s)	723
Cfr13I	GGNCC	2 cut(s)	474, 897
ClaI	ATCGAT	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	107, 752
CspAI	ACCGGT	1 cut(s)	723
CviAII	CATG	7 cut(s)	90, 193, 440, 480, 541, 953, 958
CviQI	GTAC	2 cut(s)	107, 752
DdeI	CTNAG	5 cut(s)	139, 380, 654, 873, 978
DpnI	GATC	5 cut(s)	396, 616, 622, 673, 966
DpnII	GATC	5 cut(s)	394, 614, 620, 671, 964
Eam1104I	CTCTTC	3 cut(s)	65, 225, 472
EarI	CTCTTC	3 cut(s)	65, 225, 472
Eco24I	GRGCYC	2 cut(s)	285, 342
Eco31I	GGTCTC	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	474
Eco88I	CYCGRG	2 cut(s)	30, 284
EcoO109I	RGGNCCY	1 cut(s)	897
EcoRV	GATATC	1 cut(s)	20
EcoT38I	GRGCYC	2 cut(s)	285, 342
FaeI	CATG	7 cut(s)	93, 196, 443, 483, 544, 956, 961
FaqI	GGGAC	2 cut(s)	650, 891
FatI	CATG	7 cut(s)	89, 192, 439, 479, 540, 952, 957
FauI	CCCGC	1 cut(s)	833
FbaI	TGATCA	1 cut(s)	964
Fnu4HI	GCNGC	2 cut(s)	56, 243
FokI	GGATG	2 cut(s)	427, 557
FriOI	GRGCYC	2 cut(s)	285, 342
Fsp4HI	GCNGC	2 cut(s)	56, 243
FspBI	CTAG	4 cut(s)	612, 669, 707, 719
GluI	GCNGC	2 cut(s)	56, 243
HaeIII	GGCC	1 cut(s)	899
HapII	CCGG	4 cut(s)	485, 516, 684, 724
Hin1II	CATG	7 cut(s)	93, 196, 443, 483, 544, 956, 961
HindIII	AAGCTT	1 cut(s)	586
HinfI	GANTC	4 cut(s)	101, 146, 302, 775
HpaII	CCGG	4 cut(s)	485, 516, 684, 724
HphI	GGTGA	4 cut(s)	14, 530, 722, 1007
Hpy166II	GTNNAC	3 cut(s)	477, 729, 998
Hpy188I	TCNGA	4 cut(s)	328, 381, 537, 780
Hpy188III	TCNNGA	7 cut(s)	13, 251, 286, 343, 398, 618, 719
Hpy8I	GTNNAC	3 cut(s)	477, 729, 998
HpyAV	CCTTC	4 cut(s)	35, 283, 888, 1024
HpyCH4III	ACNGT	2 cut(s)	266, 1002
HpyCH4IV	ACGT	2 cut(s)	84, 409
HpyCH4V	TGCA	8 cut(s)	158, 173, 211, 216, 371, 450, 497, 736
HpyF10VI	GCNNNNNNNGC	3 cut(s)	213, 837, 852
HpyF3I	CTNAG	5 cut(s)	139, 380, 654, 873, 978
HpySE526I	ACGT	2 cut(s)	84, 409
Hsp92II	CATG	7 cut(s)	93, 196, 443, 483, 544, 956, 961
KpnI	GGTACC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	964
Kzo9I	GATC	5 cut(s)	394, 614, 620, 671, 964
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	3 cut(s)	837, 843, 852
LweI	GCATC	2 cut(s)	405, 459
MaeI	CTAG	4 cut(s)	612, 669, 707, 719
MaeII	ACGT	2 cut(s)	84, 409
MaeIII	GTNAC	2 cut(s)	85, 604
MalI	GATC	5 cut(s)	396, 616, 622, 673, 966
MbiI	CCGCTC	2 cut(s)	58, 840
MboI	GATC	5 cut(s)	394, 614, 620, 671, 964
MboII	GAAGA	3 cut(s)	52, 242, 459
MflI	RGATCY	2 cut(s)	620, 671
MhlI	GDGCHC	2 cut(s)	285, 342
MluCI	AATT	5 cut(s)	153, 372, 445, 737, 761
MlyI	GAGTC	3 cut(s)	110, 140, 311
MmeI	TCCRAC	2 cut(s)	335, 392
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	455
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	4 cut(s)	485, 516, 684, 724
MspR9I	CCNGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	3 cut(s)	213, 837, 852
NciI	CCSGG	1 cut(s)	516
NdeII	GATC	5 cut(s)	394, 614, 620, 671, 964
NlaIII	CATG	7 cut(s)	93, 196, 443, 483, 544, 956, 961
NlaIV	GGNNCC	1 cut(s)	108
NspI	RCATGY	2 cut(s)	93, 483
PaeR7I	CTCGAG	1 cut(s)	284
PciI	ACATGT	2 cut(s)	89, 479
PciSI	GCTCTTC	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	775
PinAI	ACCGGT	1 cut(s)	723
PkrI	GCNGC	2 cut(s)	57, 244
PleI	GAGTC	3 cut(s)	109, 140, 310
PpsI	GAGTC	3 cut(s)	109, 140, 310
PscI	ACATGT	2 cut(s)	89, 479
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	2 cut(s)	474, 897
PsuI	RGATCY	2 cut(s)	620, 671
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	2 cut(s)	108, 753
RsaNI	GTAC	2 cut(s)	107, 752
RseI	CAYNNNNRTG	1 cut(s)	455
SapI	GCTCTTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	2 cut(s)	56, 243
Sau3AI	GATC	5 cut(s)	394, 614, 620, 671, 964
Sau96I	GGNCC	2 cut(s)	474, 897
SchI	GAGTC	3 cut(s)	110, 140, 311
ScrFI	CCNGG	1 cut(s)	516
SduI	GDGCHC	2 cut(s)	285, 342
SfaNI	GCATC	2 cut(s)	405, 459
SfcI	CTRYAG	3 cut(s)	223, 624, 832
Sfr274I	CTCGAG	1 cut(s)	284
SinI	GGWCC	1 cut(s)	474
SlaI	CTCGAG	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	3 cut(s)	284, 341, 807
SmoI	CTYRAG	3 cut(s)	284, 341, 807
Sse9I	AATT	5 cut(s)	153, 372, 445, 737, 761
SsiI	CCGC	4 cut(s)	56, 242, 357, 840
SspI	AATATT	2 cut(s)	177, 989
SspMI	CTAG	4 cut(s)	612, 669, 707, 719
StyD4I	CCNGG	1 cut(s)	514
TaaI	ACNGT	2 cut(s)	266, 1002
TaiI	ACGT	2 cut(s)	87, 412
TaqI	TCGA	7 cut(s)	285, 300, 453, 617, 638, 680, 821
TaqII	GACCGA	1 cut(s)	933
TasI	AATT	5 cut(s)	153, 372, 445, 737, 761
TauI	GCSGC	2 cut(s)	58, 245
TfiI	GAWTC	1 cut(s)	775
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	17, 681, 974
TspRI	CASTG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	474
XbaI	TCTAGA	1 cut(s)	718
XceI	RCATGY	2 cut(s)	93, 483
XhoI	CTCGAG	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	4 cut(s)	612, 669, 707, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.