Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006058

Physical Location & Seq

Genomic Coordinates Reverse (-)

45360068 .. 45360949

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG405400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAATTTAAAGCCCTTCCATCTTCTGCTGCTGCACTTGCTGCTACAGCCACGCAGTCACGTCGTTGCGCAGGAAACCACTGAATCACAGCAGAACCTCGACTCCACAGTGTCAATTGTGATTGTGCTGCTAGTGTGCGCCTTGTGTATCTCGGTTGGCTTGTTCTCCATCTGCAACAGCAGTTTTGTGGAGGCGCACATAGATATAGCCGGCGCCGGCATTGATTCCTCGCACCGTCCACGGCAACATCATTTTCATCATCGAGGTCTGGAGGCGGCTGTCATCGAAACGTTCCCTATCTTGCCCTACGCCGCCGTCAAGCACCTCAAGATCGGCAAGGGAGCATTGGAATGTGCAGTGTGCTTAAGCCAATTCGAGGGCTACGAAACCCTGCGTTTGCTGCCGAAATGCTACCACGTCTTCCACCCCCAATGCATCGACCCTTGGTTGGCTTCTCACCTCACGTGCCCTGTTTGCCGCGCCAACCTCGCGCCCGAGTCCAACAAGCCAGCACCAGAAAATGGTGCCTTTGTAATTGCGGATTTGGATGAGATAGTGATCGAGTCGCAGTCGGCGGGTCAGTCACCTACTCCGCTTGGACAGAACACGGAGAGCTATAGGTTGAGACTGCCGGAAGAGCTGGGGAGGCAGCTGCGTTCAAGTAACTACGTCGAGGTCGTCTTTCCGAGGCTTGGGAGTTGCAGGAAGGGATACAGGTACGGTAGTGAAGGGAGTAGTAGTAGCCAAGATGAGGATGGTCATCAATTGGGCCAGTGGGATTTAACCACCATGTTACCGCCGGTTATAGCTAGTAGTGGTGGTGCAGGTGAGATGAAGACGCTGTTAGCGCCTCATGAATCCATATGTCGGCTTCCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

293

Amino Acids

32.09

Weight (kDa)

6.09

Isoelectric Point (pI)

55.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	117 - 160	1.6e-12	Ring finger domain
zf-RING_11	PF17123	117 - 146	1.4e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	117 - 159	4.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	129 - 160	2.2e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09110 AT4G09120 AT4G09130
fragaria_vesca	FvH4_1g20110
malus_domestica	MD15G1316800.v1.1
prunus_persica	Prupe.6G195100_v2.0.a1
pyrus_communis	pycom01g06440 pycom15g27950
rosa_chinensis	RchiOBHm_Chr2g0112141 RchiOBHm_Chr7g0233001
rosa_laevigata	RLG00000001306 RLG00000017954
rosa_multiflora	Rmu_sc0000360.1_g000026 Rmu_sc0001294.1_g000027 Rmu_ssc0000018.1_g000029
rosa_roxburghii	Rroxscaffold_2G00131730
rosa_rugosa	Rorug02G0178700
rosa_samantha	Rh2AG230700 Rh2BG244000 Rh2CG235300 Rh2DG238600 Rh7AG432600 Rh7BG405400 Rh7CG451900 Rh7DG421400
rosa_wichuraiana	Rw2G017900 Rw7G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	815
Acc16I	TGCGCA	1 cut(s)	69
Acc36I	ACCTGC	1 cut(s)	815
AccB1I	GGYRCC	2 cut(s)	212, 524
AccB7I	CCANNNNNTGG	1 cut(s)	521
AccII	CGCG	2 cut(s)	480, 491
AciI	CCGC	7 cut(s)	275, 312, 478, 539, 575, 593, 797
AclI	AACGTT	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	4
AcvI	CACGTG	1 cut(s)	465
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	719
AfiI	CCNNNNNNNGG	6 cut(s)	376, 448, 521, 692, 751, 867
AflII	CTTAAG	1 cut(s)	364
AgsI	TTSAA	1 cut(s)	660
AjiI	CACGTC	2 cut(s)	61, 418
AloI	GAACNNNNNNTCC	2 cut(s)	86, 118
AluBI	AGCT	4 cut(s)	615, 640, 652, 809
AluI	AGCT	4 cut(s)	615, 640, 652, 809
Alw26I	GTCTC	1 cut(s)	619
Ama87I	CYCGRG	1 cut(s)	494
AoxI	GGCC	1 cut(s)	769
ApeKI	GCWGC	7 cut(s)	28, 31, 40, 127, 400, 649, 652
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	7 cut(s)	70, 140, 196, 215, 482, 493, 850
AspS9I	GGNCC	1 cut(s)	769
AsuHPI	GGTGA	3 cut(s)	449, 576, 839
AvaI	CYCGRG	1 cut(s)	494
BaeGI	GKGCMC	1 cut(s)	470
BaeI	ACNNNNGTAYC	2 cut(s)	709, 742
BanI	GGYRCC	2 cut(s)	212, 524
BbrPI	CACGTG	1 cut(s)	465
BbsI	GAAGAC	2 cut(s)	412, 842
BbvI	GCAGC	7 cut(s)	15, 18, 27, 114, 387, 639, 661
BccI	CCATC	3 cut(s)	27, 176, 749
BceAI	ACGGC	2 cut(s)	257, 299
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciVI	GTATCC	1 cut(s)	704
BcoDI	GTCTC	1 cut(s)	619
BfaI	CTAG	2 cut(s)	131, 810
BfmI	CTRYAG	2 cut(s)	44, 616
BfoI	RGCGCY	2 cut(s)	216, 851
BfrI	CTTAAG	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	815
BfuI	GTATCC	1 cut(s)	704
BmeT110I	CYCGRG	1 cut(s)	494
BmgBI	CACGTC	2 cut(s)	61, 418
BmgT120I	GGNCC	1 cut(s)	769
BmiI	GGNNCC	2 cut(s)	214, 526
BmsI	GCATC	1 cut(s)	444
BpiI	GAAGAC	2 cut(s)	412, 842
BpmI	CTGGAG	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	311
BsaAI	YACGTR	1 cut(s)	465
BsaBI	GATNNNNATC	2 cut(s)	557, 759
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	239, 443, 686
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 116, 724, 754
Bsc4I	CCNNNNNNNGG	6 cut(s)	376, 448, 521, 692, 751, 867
Bse118I	RCCGGY	3 cut(s)	209, 215, 799
Bse1I	ACTGG	1 cut(s)	772
Bse8I	GATNNNNATC	2 cut(s)	557, 759
BseDI	CCNNGG	3 cut(s)	239, 443, 686
BseGI	GGATG	2 cut(s)	553, 760
BseJI	GATNNNNATC	2 cut(s)	557, 759
BseLI	CCNNNNNNNGG	6 cut(s)	376, 448, 521, 692, 751, 867
BseNI	ACTGG	1 cut(s)	772
BseSI	GKGCMC	1 cut(s)	470
BseXI	GCAGC	7 cut(s)	15, 18, 27, 114, 387, 639, 661
BseYI	CCCAGC	1 cut(s)	640
BsgI	GTGCAG	3 cut(s)	17, 375, 843
Bsh1236I	CGCG	2 cut(s)	480, 491
BshFI	GGCC	1 cut(s)	771
BshNI	GGYRCC	2 cut(s)	212, 524
BsiHKCI	CYCGRG	1 cut(s)	494
BsiSI	CCGG	4 cut(s)	210, 216, 632, 800
BslI	CCNNNNNNNGG	6 cut(s)	376, 448, 521, 692, 751, 867
BsmAI	GTCTC	1 cut(s)	619
BsnI	GGCC	1 cut(s)	771
BsoBI	CYCGRG	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	470
Bsp143I	GATC	2 cut(s)	330, 558
BspACI	CCGC	7 cut(s)	275, 312, 478, 539, 575, 593, 797
BspANI	GGCC	1 cut(s)	771
BspFNI	CGCG	2 cut(s)	480, 491
BspHI	TCATGA	1 cut(s)	853
BspLI	GGNNCC	2 cut(s)	214, 526
BspMI	ACCTGC	1 cut(s)	815
BspQI	GCTCTTC	1 cut(s)	630
BspT107I	GGYRCC	2 cut(s)	212, 524
BspTI	CTTAAG	1 cut(s)	364
BsrFI	RCCGGY	3 cut(s)	209, 215, 799
BsrI	ACTGG	1 cut(s)	772
BssAI	RCCGGY	3 cut(s)	209, 215, 799
BssECI	CCNNGG	3 cut(s)	239, 443, 686
BssMI	GATC	2 cut(s)	330, 558
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	443
Bst4CI	ACNGT	3 cut(s)	109, 236, 722
Bst6I	CTCTTC	1 cut(s)	630
BstACI	GRCGYC	1 cut(s)	213
BstAFI	CTTAAG	1 cut(s)	364
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	465
BstC8I	GCNNGC	3 cut(s)	211, 217, 510
BstDSI	CCRYGG	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	553, 760
BstFNI	CGCG	2 cut(s)	480, 491
BstH2I	RGCGCY	2 cut(s)	216, 851
BstHHI	GCGC	7 cut(s)	70, 140, 196, 215, 482, 493, 850
BstKTI	GATC	2 cut(s)	333, 561
BstMAI	GTCTC	1 cut(s)	619
BstMBI	GATC	2 cut(s)	330, 558
BstMWI	GCNNNNNNNGC	9 cut(s)	37, 40, 46, 400, 474, 488, 637, 646, 847
BstSFI	CTRYAG	2 cut(s)	44, 616
BstSLI	GKGCMC	1 cut(s)	470
BstUI	CGCG	2 cut(s)	480, 491
BstV1I	GCAGC	7 cut(s)	15, 18, 27, 114, 387, 639, 661
BstV2I	GAAGAC	2 cut(s)	412, 842
BsuI	GTATCC	1 cut(s)	704
BsuRI	GGCC	1 cut(s)	771
BtgI	CCRYGG	1 cut(s)	239
BtrI	CACGTC	2 cut(s)	61, 418
BtsCI	GGATG	2 cut(s)	553, 760
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	4 cut(s)	78, 114, 363, 779
BveI	ACCTGC	1 cut(s)	815
Cac8I	GCNNGC	3 cut(s)	211, 217, 510
CciI	TCATGA	1 cut(s)	853
CfoI	GCGC	7 cut(s)	70, 140, 196, 215, 482, 493, 850
Cfr10I	RCCGGY	3 cut(s)	209, 215, 799
Cfr13I	GGNCC	1 cut(s)	769
CseI	GACGC	1 cut(s)	847
Csp6I	GTAC	1 cut(s)	718
CviAII	CATG	2 cut(s)	790, 854
CviQI	GTAC	1 cut(s)	718
DinI	GGCGCC	1 cut(s)	214
DpnI	GATC	2 cut(s)	332, 560
DpnII	GATC	2 cut(s)	330, 558
DraI	TTTAAA	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Eco130I	CCWWGG	1 cut(s)	443
Eco72I	CACGTG	1 cut(s)	465
Eco88I	CYCGRG	1 cut(s)	494
EcoT14I	CCWWGG	1 cut(s)	443
EcoT22I	ATGCAT	1 cut(s)	437
EgeI	GGCGCC	1 cut(s)	214
EheI	GGCGCC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	443
FaeI	CATG	2 cut(s)	793, 857
FaiI	YATR	8 cut(s)	200, 206, 618, 791, 806, 855, 863, 865
FatI	CATG	2 cut(s)	789, 853
FauI	CCCGC	1 cut(s)	568
FauNDI	CATATG	1 cut(s)	863
FokI	GGATG	2 cut(s)	560, 767
FspBI	CTAG	2 cut(s)	131, 810
FspI	TGCGCA	1 cut(s)	69
GlaI	GCGC	7 cut(s)	69, 139, 195, 214, 481, 492, 849
GsaI	CCCAGC	1 cut(s)	644
GsuI	CTGGAG	1 cut(s)	290
HaeII	RGCGCY	2 cut(s)	216, 851
HaeIII	GGCC	1 cut(s)	771
HapII	CCGG	4 cut(s)	210, 216, 632, 800
HgaI	GACGC	1 cut(s)	847
HhaI	GCGC	7 cut(s)	70, 140, 196, 215, 482, 493, 850
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	2 cut(s)	793, 857
Hin6I	GCGC	7 cut(s)	68, 138, 194, 213, 480, 491, 848
HinP1I	GCGC	7 cut(s)	68, 138, 194, 213, 480, 491, 848
HinfI	GANTC	6 cut(s)	83, 101, 224, 497, 563, 857
HpaII	CCGG	4 cut(s)	210, 216, 632, 800
HphI	GGTGA	3 cut(s)	449, 576, 839
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	1 cut(s)	687
Hpy188III	TCNNGA	3 cut(s)	269, 328, 854
Hpy8I	GTNNAC	1 cut(s)	239
Hpy99I	CGWCG	2 cut(s)	65, 674
HpyAV	CCTTC	3 cut(s)	25, 700, 722
HpyCH4III	ACNGT	3 cut(s)	109, 236, 722
HpyCH4IV	ACGT	5 cut(s)	60, 290, 417, 464, 669
HpyCH4V	TGCA	6 cut(s)	34, 174, 356, 435, 702, 824
HpyF10VI	GCNNNNNNNGC	9 cut(s)	37, 40, 46, 400, 474, 488, 637, 646, 847
HpySE526I	ACGT	5 cut(s)	60, 290, 417, 464, 669
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	793, 857
HspAI	GCGC	7 cut(s)	68, 138, 194, 213, 480, 491, 848
KasI	GGCGCC	1 cut(s)	212
KroI	GCCGGC	2 cut(s)	209, 215
KroNI	GCCGGC	2 cut(s)	211, 217
Kzo9I	GATC	2 cut(s)	330, 558
LguI	GCTCTTC	1 cut(s)	630
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	7 cut(s)	15, 18, 27, 114, 387, 639, 661
LweI	GCATC	1 cut(s)	444
MaeI	CTAG	2 cut(s)	131, 810
MaeII	ACGT	5 cut(s)	60, 290, 417, 464, 669
MaeIII	GTNAC	4 cut(s)	56, 582, 662, 792
MalI	GATC	2 cut(s)	332, 560
MboI	GATC	2 cut(s)	330, 558
MboII	GAAGA	4 cut(s)	14, 412, 647, 847
MfeI	CAATTG	2 cut(s)	114, 764
MhlI	GDGCHC	1 cut(s)	470
MluCI	AATT	5 cut(s)	4, 114, 371, 534, 764
Mly113I	GGCGCC	1 cut(s)	213
MlyI	GAGTC	3 cut(s)	95, 506, 572
MmeI	TCCRAC	1 cut(s)	525
Mph1103I	ATGCAT	1 cut(s)	437
MroNI	GCCGGC	2 cut(s)	209, 215
MseI	TTAA	3 cut(s)	8, 365, 782
MslI	CAYNNNNRTG	1 cut(s)	349
MspA1I	CMGCKG	1 cut(s)	652
MspCI	CTTAAG	1 cut(s)	364
MspI	CCGG	4 cut(s)	210, 216, 632, 800
MunI	CAATTG	2 cut(s)	114, 764
MvnI	CGCG	2 cut(s)	480, 491
MwoI	GCNNNNNNNGC	9 cut(s)	37, 40, 46, 400, 474, 488, 637, 646, 847
NaeI	GCCGGC	2 cut(s)	211, 217
NarI	GGCGCC	1 cut(s)	213
NdeI	CATATG	1 cut(s)	863
NdeII	GATC	2 cut(s)	330, 558
NgoMIV	GCCGGC	2 cut(s)	209, 215
NlaIII	CATG	2 cut(s)	793, 857
NlaIV	GGNNCC	2 cut(s)	214, 526
NmuCI	GTSAC	2 cut(s)	56, 582
NsbI	TGCGCA	1 cut(s)	69
NsiI	ATGCAT	1 cut(s)	437
PagI	TCATGA	1 cut(s)	853
PaqCI	CACCTGC	1 cut(s)	815
PciSI	GCTCTTC	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	2 cut(s)	381, 675
PdiI	GCCGGC	2 cut(s)	211, 217
PfeI	GAWTC	3 cut(s)	83, 224, 857
PflMI	CCANNNNNTGG	1 cut(s)	521
PleI	GAGTC	3 cut(s)	95, 505, 571
PluTI	GGCGCC	1 cut(s)	216
PmaCI	CACGTG	1 cut(s)	465
PmlI	CACGTG	1 cut(s)	465
PpsI	GAGTC	3 cut(s)	95, 505, 571
Ppu21I	YACGTR	1 cut(s)	465
Psp1406I	AACGTT	1 cut(s)	290
PspCI	CACGTG	1 cut(s)	465
PspFI	CCCAGC	1 cut(s)	640
PspN4I	GGNNCC	2 cut(s)	214, 526
PspPI	GGNCC	1 cut(s)	769
PvuII	CAGCTG	1 cut(s)	652
RsaI	GTAC	1 cut(s)	719
RsaNI	GTAC	1 cut(s)	718
RseI	CAYNNNNRTG	1 cut(s)	349
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	3 cut(s)	8, 365, 782
Sau3AI	GATC	2 cut(s)	330, 558
Sau96I	GGNCC	1 cut(s)	769
SchI	GAGTC	3 cut(s)	95, 506, 572
SduI	GDGCHC	1 cut(s)	470
SfaNI	GCATC	1 cut(s)	444
SfcI	CTRYAG	2 cut(s)	44, 616
SfoI	GGCGCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	349
SmlI	CTYRAG	2 cut(s)	326, 364
SmoI	CTYRAG	2 cut(s)	326, 364
Sse9I	AATT	5 cut(s)	4, 114, 371, 534, 764
SsiI	CCGC	7 cut(s)	275, 312, 478, 539, 575, 593, 797
SspDI	GGCGCC	1 cut(s)	212
SspMI	CTAG	2 cut(s)	131, 810
StyI	CCWWGG	1 cut(s)	443
TaaI	ACNGT	3 cut(s)	109, 236, 722
TaiI	ACGT	5 cut(s)	63, 293, 420, 467, 672
TaqI	TCGA	7 cut(s)	99, 262, 285, 375, 438, 561, 672
TasI	AATT	5 cut(s)	4, 114, 371, 534, 764
TauI	GCSGC	3 cut(s)	278, 314, 480
TfiI	GAWTC	3 cut(s)	83, 224, 857
Tru1I	TTAA	3 cut(s)	8, 365, 782
Tru9I	TTAA	3 cut(s)	8, 365, 782
TscAI	CASTG	4 cut(s)	85, 114, 363, 779
TseFI	GTSAC	2 cut(s)	56, 582
TseI	GCWGC	7 cut(s)	28, 31, 40, 127, 400, 649, 652
Tsp45I	GTSAC	2 cut(s)	56, 582
TspDTI	ATGAA	4 cut(s)	17, 245, 848, 870
TspGWI	ACGGA	1 cut(s)	623
TspRI	CASTG	4 cut(s)	85, 114, 363, 779
Van91I	CCANNNNNTGG	1 cut(s)	521
Vha464I	CTTAAG	1 cut(s)	364
XapI	RAATTY	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XspI	CTAG	2 cut(s)	131, 810
Zsp2I	ATGCAT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.