Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006058

Physical Location & Seq

Genomic Coordinates Reverse (-)

16434906 .. 16436843

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0178700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGTCTCAAATTCGGCAAATCTCTACTAGTATCGTCTGTCCAACTTGTGAGAATGATGAGTTAACTCATAGAGTCGAGTTAAGTCCATGGGATCTTCGACTCCTTCAACTTGAGTACATCCAGAAAGGGCTTCTCTTCCCAAAGCTAGCAGAGAAAGAAGTAGACCAGAGCTTGATACAACACCTAAAAGTTTCCCTTTCTCGCACTTTGAATATCTTGTACCCACTAGCAGGTCGCTTATCCCAGATTGAAAACGAAGATGGCACCACTTGCTTTTTCATCAACTGTAACAGCGCAGGAGCCCAATTTGTTCATGCAGCTCATGATGGTGTCAGAGTGGCTGATATTCTCGACCCTATTTACATTCCTGGTGAGATTATCGAAAACCTATTTTCTATGAATTCAGTTCTGAACTATGAAGGCACTTCAAAACCATTGCTTGCAGTGCAAATCACTGAGCTTGCGGATGGCATATTTATTGGTTGCAGCATAAACCATGTGGTTGCAGATGGCACCTCTTTCTGGCATTTCTGTAATACTTGGTCTCACATCTCTCGTTCTGGCTCTGATGATACAGTTTCTCAAAGTAGTCCTCCTGTTTTTGGTCGTCATTTTCTTGATGGCCTAATTGATCTCCCAGTTCGCATACCGTTCTCCCAAATTCAAATCCCGGAGACACTTATTCAACAGACACCTTCTTCAACTCTTTTACAAAGGGTGTTTCATTTTCCCAAAGAAAAAGTTGCACAGCTCAAAGCAAAGGCTAATGCTGAGATGGGTACAAATAACATCTCGTCCCTTCAGGCACTCATGGCTCATCTTTGGAGAGCCACAACACGTGGAAGACGTGATGTCAAATCCGATGAAGAGACTACTTACAGGATTGCAATAGGGTTGAGGCAAAAATTGAAGCCACCATTGCCAAATCTTTACATGGGGAATGCACTTCGAGGAGTTTCTACCAACTCCACTGCAAGTGATCTGCTACAACACGGACTAGGATGGACCGCTTTGAAAATCAACAAAGCGATTGCTTCCATGACACCTGAAGATGTGACAAGAGAATTGGAGGACTGGGTAAAGGCCCCTATCATACGTCCAAGTTTAAGGGCTCAAACAAGAGTTCACAGCTTGCTCACAGGAAGCTCACCGCGGTTCAATGTGTATGGTAATGATTTTGGTTGGGGGAGACCGCTTGCTGTGAGAAGCGGAAATGCAAATAAAATGAATGGGAAGCTGACAGTGTTTCCTGGTGCTGAAGAAGGAAGTATTGATTTTGAAGTTTGCCTTTTGCCTGAGACTCTACATGCTATGGCGGACGATGCAGAGTTCATGGAAGCTGTGCTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

450

Amino Acids

49.9

Weight (kDa)

6.02

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	6 - 445	2e-85	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09110 AT4G09120 AT4G09130
fragaria_vesca	FvH4_1g20110
malus_domestica	MD15G1316800.v1.1
prunus_persica	Prupe.6G195100_v2.0.a1
pyrus_communis	pycom01g06440 pycom15g27950
rosa_chinensis	RchiOBHm_Chr2g0112141 RchiOBHm_Chr7g0233001
rosa_laevigata	RLG00000001306 RLG00000017954
rosa_multiflora	Rmu_sc0000360.1_g000026 Rmu_sc0001294.1_g000027 Rmu_ssc0000018.1_g000029
rosa_roxburghii	Rroxscaffold_2G00131730
rosa_rugosa	Rorug02G0178700
rosa_samantha	Rh2AG230700 Rh2BG244000 Rh2CG235300 Rh2DG238600 Rh7AG432600 Rh7BG405400 Rh7CG451900 Rh7DG421400
rosa_wichuraiana	Rw2G017900 Rw7G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	221
AccB1I	GGYRCC	2 cut(s)	263, 512
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	1 cut(s)	1153
AciI	CCGC	7 cut(s)	464, 1008, 1151, 1153, 1193, 1209, 1316
AclWI	GGATC	1 cut(s)	99
AcsI	RAATTY	3 cut(s)	9, 400, 660
AcuI	CTGAAG	3 cut(s)	785, 1068, 1278
AcvI	CACGTG	1 cut(s)	839
AfaI	GTAC	3 cut(s)	116, 221, 781
AfiI	CCNNNNNNNGG	3 cut(s)	230, 522, 602
AflIII	ACRYGT	1 cut(s)	836
AhdI	GACNNNNNGTC	1 cut(s)	851
AhlI	ACTAGT	1 cut(s)	26
AjiI	CACGTC	1 cut(s)	848
AjnI	CCWGG	2 cut(s)	367, 1249
AluBI	AGCT	9 cut(s)	145, 171, 320, 460, 751, 1131, 1146, 1237, 1340
AluI	AGCT	9 cut(s)	145, 171, 320, 460, 751, 1131, 1146, 1237, 1340
Alw21I	GWGCWC	1 cut(s)	1347
Alw26I	GTCTC	6 cut(s)	9, 549, 668, 863, 1183, 1292
AlwI	GGATC	1 cut(s)	99
AoxI	GGCC	2 cut(s)	622, 1083
ApeKI	GCWGC	2 cut(s)	317, 486
ApoI	RAATTY	3 cut(s)	9, 400, 660
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	2 cut(s)	1005, 1084
AsuC2I	CCSGG	1 cut(s)	671
AsuHPI	GGTGA	2 cut(s)	383, 1140
AsuNHI	GCTAGC	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	1005
BanI	GGYRCC	2 cut(s)	263, 512
BanII	GRGCYC	2 cut(s)	304, 1114
BbrPI	CACGTG	1 cut(s)	839
BbsI	GAAGAC	1 cut(s)	850
Bbv12I	GWGCWC	1 cut(s)	1347
BbvI	GCAGC	2 cut(s)	329, 498
BccI	CCATC	7 cut(s)	254, 320, 461, 503, 614, 769, 996
BciT130I	CCWGG	2 cut(s)	369, 1251
BcnI	CCSGG	1 cut(s)	671
BcoDI	GTCTC	6 cut(s)	9, 549, 668, 863, 1183, 1292
BcuI	ACTAGT	1 cut(s)	26
BfaI	CTAG	4 cut(s)	27, 146, 227, 998
BfuAI	ACCTGC	1 cut(s)	221
BisI	GCNGC	2 cut(s)	318, 487
BlsI	GCNGC	2 cut(s)	319, 488
Bme1390I	CCNGG	3 cut(s)	369, 671, 1251
Bme18I	GGWCC	1 cut(s)	1005
BmeRI	GACNNNNNGTC	1 cut(s)	851
BmgBI	CACGTC	1 cut(s)	848
BmgT120I	GGNCC	2 cut(s)	1005, 1084
BmiI	GGNNCC	4 cut(s)	265, 301, 514, 1086
BmrFI	CCNGG	3 cut(s)	369, 671, 1251
BmrI	ACTGGG	2 cut(s)	632, 1084
BmsI	GCATC	1 cut(s)	1312
BmtI	GCTAGC	1 cut(s)	149
BmuI	ACTGGG	2 cut(s)	632, 1084
BpiI	GAAGAC	1 cut(s)	850
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	671
BsaAI	YACGTR	1 cut(s)	839
BsaI	GGTCTC	2 cut(s)	549, 1183
BsaJI	CCNNGG	2 cut(s)	86, 1151
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 522, 602
Bse1I	ACTGG	2 cut(s)	638, 1079
Bse3DI	GCAATG	2 cut(s)	434, 917
BseBI	CCWGG	2 cut(s)	369, 1251
BseDI	CCNNGG	2 cut(s)	86, 1151
BseGI	GGATG	3 cut(s)	117, 472, 1007
BseLI	CCNNNNNNNGG	3 cut(s)	230, 522, 602
BseMI	GCAATG	2 cut(s)	434, 917
BseMII	CTCAG	3 cut(s)	447, 762, 1287
BseNI	ACTGG	2 cut(s)	638, 1079
BseRI	GAGGAG	1 cut(s)	966
BseXI	GCAGC	2 cut(s)	329, 498
Bsh1236I	CGCG	1 cut(s)	1153
BshFI	GGCC	2 cut(s)	624, 1085
BshNI	GGYRCC	2 cut(s)	263, 512
BsiHKAI	GWGCWC	1 cut(s)	1347
BsiSI	CCGG	1 cut(s)	671
BslFI	GGGAC	1 cut(s)	781
BslI	CCNNNNNNNGG	3 cut(s)	230, 522, 602
BsmAI	GTCTC	6 cut(s)	9, 549, 668, 863, 1183, 1292
BsmFI	GGGAC	1 cut(s)	781
BsmI	GAATGC	1 cut(s)	946
BsnI	GGCC	2 cut(s)	624, 1085
Bso31I	GGTCTC	2 cut(s)	549, 1183
Bsp1286I	GDGCHC	3 cut(s)	304, 1114, 1347
Bsp143I	GATC	3 cut(s)	91, 631, 979
Bsp19I	CCATGG	1 cut(s)	86
BspACI	CCGC	7 cut(s)	464, 1008, 1151, 1153, 1193, 1209, 1316
BspANI	GGCC	2 cut(s)	624, 1085
BspCNI	CTCAG	3 cut(s)	448, 763, 1288
BspFNI	CGCG	1 cut(s)	1153
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	4 cut(s)	265, 301, 514, 1086
BspMI	ACCTGC	1 cut(s)	221
BspOI	GCTAGC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	99
BspT107I	GGYRCC	2 cut(s)	263, 512
BspTNI	GGTCTC	2 cut(s)	549, 1183
BsrDI	GCAATG	2 cut(s)	434, 917
BsrI	ACTGG	2 cut(s)	638, 1079
BssECI	CCNNGG	2 cut(s)	86, 1151
BssMI	GATC	3 cut(s)	91, 631, 979
BssT1I	CCWWGG	1 cut(s)	86
Bst2UI	CCWGG	2 cut(s)	369, 1251
Bst4CI	ACNGT	4 cut(s)	287, 577, 651, 1243
Bst6I	CTCTTC	2 cut(s)	140, 861
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstBAI	YACGTR	1 cut(s)	839
BstC8I	GCNNGC	5 cut(s)	147, 441, 462, 1133, 1197
BstDEI	CTNAG	3 cut(s)	456, 771, 1296
BstDSI	CCRYGG	2 cut(s)	86, 1151
BstF5I	GGATG	3 cut(s)	117, 472, 1007
BstFNI	CGCG	1 cut(s)	1153
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	3 cut(s)	94, 634, 982
BstMAI	GTCTC	6 cut(s)	9, 549, 668, 863, 1183, 1292
BstMBI	GATC	3 cut(s)	91, 631, 979
BstMWI	GCNNNNNNNGC	5 cut(s)	270, 445, 812, 919, 1322
BstNI	CCWGG	2 cut(s)	369, 1251
BstNSI	RCATGY	1 cut(s)	1310
BstSCI	CCNGG	3 cut(s)	367, 669, 1249
BstUI	CGCG	1 cut(s)	1153
BstV1I	GCAGC	2 cut(s)	329, 498
BstV2I	GAAGAC	1 cut(s)	850
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	624, 1085
BtgI	CCRYGG	2 cut(s)	86, 1151
BtrI	CACGTC	1 cut(s)	848
BtsCI	GGATG	3 cut(s)	117, 472, 1007
BtsI	GCAGTG	2 cut(s)	450, 969
BtsIMutI	CAGTG	4 cut(s)	450, 453, 969, 1248
BveI	ACCTGC	1 cut(s)	221
Cac8I	GCNNGC	5 cut(s)	147, 441, 462, 1133, 1197
CciI	TCATGA	1 cut(s)	322
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	2 cut(s)	1005, 1084
Cfr42I	CCGCGG	1 cut(s)	1154
Csp6I	GTAC	3 cut(s)	115, 220, 780
CviQI	GTAC	3 cut(s)	115, 220, 780
DdeI	CTNAG	3 cut(s)	456, 771, 1296
DpnI	GATC	3 cut(s)	93, 633, 981
DpnII	GATC	3 cut(s)	91, 631, 979
DriI	GACNNNNNGTC	1 cut(s)	851
Eam1104I	CTCTTC	2 cut(s)	140, 861
Eam1105I	GACNNNNNGTC	1 cut(s)	851
EarI	CTCTTC	2 cut(s)	140, 861
EciI	GGCGGA	1 cut(s)	1331
Eco130I	CCWWGG	1 cut(s)	86
Eco24I	GRGCYC	2 cut(s)	304, 1114
Eco31I	GGTCTC	2 cut(s)	549, 1183
Eco47I	GGWCC	1 cut(s)	1005
Eco57I	CTGAAG	3 cut(s)	785, 1068, 1278
Eco72I	CACGTG	1 cut(s)	839
EcoO109I	RGGNCCY	1 cut(s)	1084
EcoRI	GAATTC	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	367, 1249
EcoT14I	CCWWGG	1 cut(s)	86
EcoT38I	GRGCYC	2 cut(s)	304, 1114
ErhI	CCWWGG	1 cut(s)	86
FalI	AAGNNNNNCTT	4 cut(s)	180, 212, 1272, 1304
FaqI	GGGAC	1 cut(s)	781
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	318, 487
FokI	GGATG	3 cut(s)	104, 479, 1014
FriOI	GRGCYC	2 cut(s)	304, 1114
Fsp4HI	GCNGC	2 cut(s)	318, 487
FspBI	CTAG	4 cut(s)	27, 146, 227, 998
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	2 cut(s)	318, 487
HaeIII	GGCC	2 cut(s)	624, 1085
HapII	CCGG	1 cut(s)	671
HhaI	GCGC	1 cut(s)	296
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HinfI	GANTC	3 cut(s)	72, 99, 1300
HpaI	GTTAAC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	2 cut(s)	383, 1140
Hpy166II	GTNNAC	3 cut(s)	63, 163, 1126
Hpy188I	TCNGA	4 cut(s)	335, 411, 568, 862
Hpy188III	TCNNGA	4 cut(s)	121, 323, 350, 617
Hpy8I	GTNNAC	3 cut(s)	63, 163, 1126
HpyAV	CCTTC	5 cut(s)	113, 413, 705, 809, 1256
HpyCH4III	ACNGT	4 cut(s)	287, 577, 651, 1243
HpyCH4IV	ACGT	3 cut(s)	838, 847, 1096
HpyF10VI	GCNNNNNNNGC	5 cut(s)	270, 445, 812, 919, 1322
HpyF3I	CTNAG	3 cut(s)	456, 771, 1296
HpySE526I	ACGT	3 cut(s)	838, 847, 1096
HspAI	GCGC	1 cut(s)	294
KspAI	GTTAAC	1 cut(s)	63
KspI	CCGCGG	1 cut(s)	1154
Kzo9I	GATC	3 cut(s)	91, 631, 979
LmnI	GCTCC	1 cut(s)	299
Lsp1109I	GCAGC	2 cut(s)	329, 498
LweI	GCATC	1 cut(s)	1312
MaeI	CTAG	4 cut(s)	27, 146, 227, 998
MaeII	ACGT	3 cut(s)	838, 847, 1096
MaeIII	GTNAC	2 cut(s)	287, 1054
MalI	GATC	3 cut(s)	93, 633, 981
MboI	GATC	3 cut(s)	91, 631, 979
MboII	GAAGA	8 cut(s)	86, 127, 269, 690, 855, 878, 1061, 1271
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	3 cut(s)	304, 1114, 1347
MluCI	AATT	7 cut(s)	9, 305, 400, 627, 660, 905, 1064
MlyI	GAGTC	3 cut(s)	81, 93, 1294
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	5 cut(s)	526, 603, 891, 944, 1063
MseI	TTAA	3 cut(s)	62, 80, 1106
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	1153
MspI	CCGG	1 cut(s)	671
MspR9I	CCNGG	3 cut(s)	369, 671, 1251
Mva1269I	GAATGC	1 cut(s)	946
MvaI	CCWGG	2 cut(s)	369, 1251
MvnI	CGCG	1 cut(s)	1153
MwoI	GCNNNNNNNGC	5 cut(s)	270, 445, 812, 919, 1322
NciI	CCSGG	1 cut(s)	671
NcoI	CCATGG	1 cut(s)	86
NdeII	GATC	3 cut(s)	91, 631, 979
NheI	GCTAGC	1 cut(s)	145
NlaIV	GGNNCC	4 cut(s)	265, 301, 514, 1086
NmuCI	GTSAC	1 cut(s)	1054
NspI	RCATGY	1 cut(s)	1310
PagI	TCATGA	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	844
PctI	GAATGC	1 cut(s)	946
PfoI	TCCNGGA	1 cut(s)	669
PkrI	GCNGC	2 cut(s)	319, 488
PleI	GAGTC	3 cut(s)	80, 93, 1294
PmaCI	CACGTG	1 cut(s)	839
PmlI	CACGTG	1 cut(s)	839
PpsI	GAGTC	3 cut(s)	80, 93, 1294
Ppu21I	YACGTR	1 cut(s)	839
Psp6I	CCWGG	2 cut(s)	367, 1249
PspCI	CACGTG	1 cut(s)	839
PspGI	CCWGG	2 cut(s)	367, 1249
PspN4I	GGNNCC	4 cut(s)	265, 301, 514, 1086
PspPI	GGNCC	2 cut(s)	1005, 1084
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	3 cut(s)	116, 221, 781
RsaNI	GTAC	3 cut(s)	115, 220, 780
RseI	CAYNNNNRTG	1 cut(s)	327
SacII	CCGCGG	1 cut(s)	1154
SaqAI	TTAA	3 cut(s)	62, 80, 1106
SatI	GCNGC	2 cut(s)	318, 487
Sau3AI	GATC	3 cut(s)	91, 631, 979
Sau96I	GGNCC	2 cut(s)	1005, 1084
SchI	GAGTC	3 cut(s)	81, 93, 1294
ScrFI	CCNGG	3 cut(s)	369, 671, 1251
SduI	GDGCHC	3 cut(s)	304, 1114, 1347
SfaNI	GCATC	1 cut(s)	1312
Sfr303I	CCGCGG	1 cut(s)	1154
SgrBI	CCGCGG	1 cut(s)	1154
SinI	GGWCC	1 cut(s)	1005
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SpeI	ACTAGT	1 cut(s)	26
Sse9I	AATT	7 cut(s)	9, 305, 400, 627, 660, 905, 1064
SsiI	CCGC	7 cut(s)	464, 1008, 1151, 1153, 1193, 1209, 1316
SspMI	CTAG	4 cut(s)	27, 146, 227, 998
StyD4I	CCNGG	3 cut(s)	367, 669, 1249
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	4 cut(s)	287, 577, 651, 1243
TaiI	ACGT	3 cut(s)	841, 850, 1099
TaqI	TCGA	5 cut(s)	75, 97, 351, 381, 949
TasI	AATT	7 cut(s)	9, 305, 400, 627, 660, 905, 1064
TatI	WGTACW	1 cut(s)	114
Tru1I	TTAA	3 cut(s)	62, 80, 1106
Tru9I	TTAA	3 cut(s)	62, 80, 1106
TscAI	CASTG	4 cut(s)	450, 460, 976, 1248
TseFI	GTSAC	1 cut(s)	1054
TseI	GCWGC	2 cut(s)	317, 486
Tsp45I	GTSAC	1 cut(s)	1054
TspDTI	ATGAA	8 cut(s)	268, 302, 413, 432, 713, 879, 1241, 1321
TspGWI	ACGGA	1 cut(s)	1008
TspRI	CASTG	4 cut(s)	450, 460, 976, 1248
VpaK11BI	GGWCC	1 cut(s)	1005
XapI	RAATTY	3 cut(s)	9, 400, 660
XceI	RCATGY	1 cut(s)	1310
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	4 cut(s)	27, 146, 227, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.