Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006058

Physical Location & Seq

Genomic Coordinates Reverse (-)

59480364 .. 59481251

Gene Structure 888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG421400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAATTTAAAGCCCTTCCATCTTGTGCTGCTGCACTTGCTGCTACAGCCACGCAGTCACGTCGTTGCGCAGGAAACCACTGAATCACAGCAGAACCTCGACTCCACAGTGGCAATTGTGATTGTGCTGCTAGTGTGCGCCTTGTGTATCTCGGTTGGCTTGTTCTCCATCTGCAACAGCCGTTGTGTGGAGGCGCACATAGATATAGCCGGCGCCGGCATTGATTCCTCGCACCGTCCACGGCAACATCATTTTCATCATCGAGGTCTGGAGGCGGCTGTCATCGAAACGTTCCCTATCTTGCCCTACGCCGCCGTCAAGCACCTCAAGATCGGCAAGGGAGCACTGGAATGTGCAGTGTGCTTAAGCCAATTCGAGGACTACGAAACCCTGCGTTTGCTGCCGAAATGCTACCACGTCTTCCACCCCCAATGCATCGACCCTTGGTTGGCTTCTCACCGCACGTGCCCTGTTTGCCGCGCCAACCTCGCGCCCAAGTCCAACAAGCCAGCACCAGAAAATGGTGCCTTTGTAATTGCGGATTTGGATGAGATAGTGATCGAGTCGCAGTCGGCGGGTCAGTCACCTACTCCGCTTGGACCGCTTGGACAGAACACGGAGAGCTATAGGTTGAGACTGCCGGAAGAGCTGGGAAGGCAGCTGCGTTCAAGTAGCTACGTTGAGGTCGTCTTTCCGAGGCTTGCGAGTTGCAGGAAGGGATACAGGTACGGTAGTGAAGGGAGTAGTAGCCAAGATGAGGATGGTCATCAATTGGGCCAGTGGGATTTAACCACCATGTTACCGCCGGTTATAGCTAGTAGTGGAGGTGCAGGTGAGATGAAGACGCTGTTAACGCCTCATGAATCCATATGTCGGCTTCCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

295

Amino Acids

32.38

Weight (kDa)

6.42

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	117 - 160	4e-13	Ring finger domain
zf-RING_11	PF17123	117 - 146	7.7e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	117 - 159	5.7e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	118 - 159	3.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	130 - 160	5.8e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09110 AT4G09120 AT4G09130
fragaria_vesca	FvH4_1g20110
malus_domestica	MD15G1316800.v1.1
prunus_persica	Prupe.6G195100_v2.0.a1
pyrus_communis	pycom01g06440 pycom15g27950
rosa_chinensis	RchiOBHm_Chr2g0112141 RchiOBHm_Chr7g0233001
rosa_laevigata	RLG00000001306 RLG00000017954
rosa_multiflora	Rmu_sc0000360.1_g000026 Rmu_sc0001294.1_g000027 Rmu_ssc0000018.1_g000029
rosa_roxburghii	Rroxscaffold_2G00131730
rosa_rugosa	Rorug02G0178700
rosa_samantha	Rh2AG230700 Rh2BG244000 Rh2CG235300 Rh2DG238600 Rh7AG432600 Rh7BG405400 Rh7CG451900 Rh7DG421400
rosa_wichuraiana	Rw2G017900 Rw7G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	821
Acc16I	TGCGCA	1 cut(s)	69
Acc36I	ACCTGC	1 cut(s)	821
AccB1I	GGYRCC	2 cut(s)	212, 524
AccB7I	CCANNNNNTGG	1 cut(s)	521
AccII	CGCG	2 cut(s)	480, 491
AciI	CCGC	9 cut(s)	275, 312, 460, 478, 539, 575, 593, 602, 803
AclI	AACGTT	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	4
AcvI	CACGTG	1 cut(s)	465
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	728
AfiI	CCNNNNNNNGG	6 cut(s)	187, 376, 448, 521, 757, 873
AflII	CTTAAG	1 cut(s)	364
AgsI	TTSAA	1 cut(s)	669
AjiI	CACGTC	2 cut(s)	61, 418
AloI	GAACNNNNNNTCC	2 cut(s)	86, 118
AluBI	AGCT	5 cut(s)	624, 649, 661, 675, 815
AluI	AGCT	5 cut(s)	624, 649, 661, 675, 815
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	628
AoxI	GGCC	1 cut(s)	775
ApeKI	GCWGC	7 cut(s)	28, 31, 40, 127, 400, 658, 661
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	6 cut(s)	70, 140, 196, 215, 482, 493
AspS9I	GGNCC	2 cut(s)	599, 775
AsuHPI	GGTGA	3 cut(s)	449, 576, 845
AvaII	GGWCC	1 cut(s)	599
BaeGI	GKGCMC	1 cut(s)	470
BaeI	ACNNNNGTAYC	2 cut(s)	718, 751
BanI	GGYRCC	2 cut(s)	212, 524
BbrPI	CACGTG	1 cut(s)	465
BbsI	GAAGAC	2 cut(s)	412, 848
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	7 cut(s)	15, 18, 27, 114, 387, 648, 670
BccI	CCATC	3 cut(s)	27, 176, 755
BceAI	ACGGC	3 cut(s)	165, 257, 299
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciVI	GTATCC	1 cut(s)	713
BcoDI	GTCTC	1 cut(s)	628
BfaI	CTAG	2 cut(s)	131, 816
BfmI	CTRYAG	2 cut(s)	44, 625
BfoI	RGCGCY	1 cut(s)	216
BfrI	CTTAAG	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	821
BfuI	GTATCC	1 cut(s)	713
Bme18I	GGWCC	1 cut(s)	599
BmgBI	CACGTC	2 cut(s)	61, 418
BmgT120I	GGNCC	2 cut(s)	599, 775
BmiI	GGNNCC	2 cut(s)	214, 526
BmsI	GCATC	1 cut(s)	444
BpiI	GAAGAC	2 cut(s)	412, 848
BpmI	CTGGAG	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	311
BsaAI	YACGTR	1 cut(s)	465
BsaBI	GATNNNNATC	2 cut(s)	557, 765
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	239, 443, 695
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	6 cut(s)	187, 376, 448, 521, 757, 873
Bse118I	RCCGGY	3 cut(s)	209, 215, 805
Bse1I	ACTGG	2 cut(s)	351, 778
Bse8I	GATNNNNATC	2 cut(s)	557, 765
BseDI	CCNNGG	3 cut(s)	239, 443, 695
BseGI	GGATG	2 cut(s)	553, 766
BseJI	GATNNNNATC	2 cut(s)	557, 765
BseLI	CCNNNNNNNGG	6 cut(s)	187, 376, 448, 521, 757, 873
BseNI	ACTGG	2 cut(s)	351, 778
BseSI	GKGCMC	1 cut(s)	470
BseXI	GCAGC	7 cut(s)	15, 18, 27, 114, 387, 648, 670
BseYI	CCCAGC	1 cut(s)	649
BsgI	GTGCAG	3 cut(s)	17, 375, 849
Bsh1236I	CGCG	2 cut(s)	480, 491
BshFI	GGCC	1 cut(s)	777
BshNI	GGYRCC	2 cut(s)	212, 524
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	4 cut(s)	210, 216, 641, 806
BslI	CCNNNNNNNGG	6 cut(s)	187, 376, 448, 521, 757, 873
BsmAI	GTCTC	1 cut(s)	628
BsnI	GGCC	1 cut(s)	777
Bsp1286I	GDGCHC	2 cut(s)	346, 470
Bsp143I	GATC	2 cut(s)	330, 558
BspACI	CCGC	9 cut(s)	275, 312, 460, 478, 539, 575, 593, 602, 803
BspANI	GGCC	1 cut(s)	777
BspFNI	CGCG	2 cut(s)	480, 491
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	2 cut(s)	214, 526
BspMI	ACCTGC	1 cut(s)	821
BspQI	GCTCTTC	1 cut(s)	639
BspT107I	GGYRCC	2 cut(s)	212, 524
BspTI	CTTAAG	1 cut(s)	364
BsrFI	RCCGGY	3 cut(s)	209, 215, 805
BsrI	ACTGG	2 cut(s)	351, 778
BssAI	RCCGGY	3 cut(s)	209, 215, 805
BssECI	CCNNGG	3 cut(s)	239, 443, 695
BssMI	GATC	2 cut(s)	330, 558
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	443
Bst4CI	ACNGT	3 cut(s)	109, 236, 731
Bst6I	CTCTTC	1 cut(s)	639
BstACI	GRCGYC	1 cut(s)	213
BstAFI	CTTAAG	1 cut(s)	364
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	465
BstC8I	GCNNGC	4 cut(s)	211, 217, 510, 702
BstDSI	CCRYGG	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	553, 766
BstFNI	CGCG	2 cut(s)	480, 491
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	6 cut(s)	70, 140, 196, 215, 482, 493
BstKTI	GATC	2 cut(s)	333, 561
BstMAI	GTCTC	1 cut(s)	628
BstMBI	GATC	2 cut(s)	330, 558
BstSFI	CTRYAG	2 cut(s)	44, 625
BstSLI	GKGCMC	1 cut(s)	470
BstUI	CGCG	2 cut(s)	480, 491
BstV1I	GCAGC	7 cut(s)	15, 18, 27, 114, 387, 648, 670
BstV2I	GAAGAC	2 cut(s)	412, 848
BsuI	GTATCC	1 cut(s)	713
BsuRI	GGCC	1 cut(s)	777
BtgI	CCRYGG	1 cut(s)	239
BtrI	CACGTC	2 cut(s)	61, 418
BtsCI	GGATG	2 cut(s)	553, 766
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	5 cut(s)	78, 114, 344, 363, 785
BveI	ACCTGC	1 cut(s)	821
Cac8I	GCNNGC	4 cut(s)	211, 217, 510, 702
CciI	TCATGA	1 cut(s)	859
CfoI	GCGC	6 cut(s)	70, 140, 196, 215, 482, 493
Cfr10I	RCCGGY	3 cut(s)	209, 215, 805
Cfr13I	GGNCC	2 cut(s)	599, 775
CseI	GACGC	1 cut(s)	853
Csp6I	GTAC	1 cut(s)	727
CviAII	CATG	2 cut(s)	796, 860
CviQI	GTAC	1 cut(s)	727
DinI	GGCGCC	1 cut(s)	214
DpnI	GATC	2 cut(s)	332, 560
DpnII	GATC	2 cut(s)	330, 558
DraI	TTTAAA	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Eco130I	CCWWGG	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	599
Eco72I	CACGTG	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	443
EcoT22I	ATGCAT	1 cut(s)	437
EgeI	GGCGCC	1 cut(s)	214
EheI	GGCGCC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	443
FaeI	CATG	2 cut(s)	799, 863
FaiI	YATR	8 cut(s)	200, 206, 627, 797, 812, 861, 869, 871
FatI	CATG	2 cut(s)	795, 859
FauI	CCCGC	1 cut(s)	568
FauNDI	CATATG	1 cut(s)	869
FokI	GGATG	2 cut(s)	560, 773
FspBI	CTAG	2 cut(s)	131, 816
FspI	TGCGCA	1 cut(s)	69
GlaI	GCGC	6 cut(s)	69, 139, 195, 214, 481, 492
GsaI	CCCAGC	1 cut(s)	653
GsuI	CTGGAG	1 cut(s)	290
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	777
HapII	CCGG	4 cut(s)	210, 216, 641, 806
HgaI	GACGC	1 cut(s)	853
HhaI	GCGC	6 cut(s)	70, 140, 196, 215, 482, 493
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	2 cut(s)	799, 863
Hin6I	GCGC	6 cut(s)	68, 138, 194, 213, 480, 491
HinP1I	GCGC	6 cut(s)	68, 138, 194, 213, 480, 491
HincII	GTYRAC	1 cut(s)	852
HindII	GTYRAC	1 cut(s)	852
HinfI	GANTC	5 cut(s)	83, 101, 224, 563, 863
HpaI	GTTAAC	1 cut(s)	852
HpaII	CCGG	4 cut(s)	210, 216, 641, 806
HphI	GGTGA	3 cut(s)	449, 576, 845
Hpy166II	GTNNAC	2 cut(s)	239, 852
Hpy188I	TCNGA	1 cut(s)	696
Hpy188III	TCNNGA	3 cut(s)	269, 328, 860
Hpy8I	GTNNAC	2 cut(s)	239, 852
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	4 cut(s)	25, 648, 709, 731
HpyCH4III	ACNGT	3 cut(s)	109, 236, 731
HpyCH4IV	ACGT	5 cut(s)	60, 290, 417, 464, 678
HpyCH4V	TGCA	6 cut(s)	34, 174, 356, 435, 711, 830
HpySE526I	ACGT	5 cut(s)	60, 290, 417, 464, 678
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	799, 863
HspAI	GCGC	6 cut(s)	68, 138, 194, 213, 480, 491
KasI	GGCGCC	1 cut(s)	212
KroI	GCCGGC	2 cut(s)	209, 215
KroNI	GCCGGC	2 cut(s)	211, 217
KspAI	GTTAAC	1 cut(s)	852
Kzo9I	GATC	2 cut(s)	330, 558
LguI	GCTCTTC	1 cut(s)	639
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	7 cut(s)	15, 18, 27, 114, 387, 648, 670
LweI	GCATC	1 cut(s)	444
MaeI	CTAG	2 cut(s)	131, 816
MaeII	ACGT	5 cut(s)	60, 290, 417, 464, 678
MaeIII	GTNAC	3 cut(s)	56, 582, 798
MalI	GATC	2 cut(s)	332, 560
MboI	GATC	2 cut(s)	330, 558
MboII	GAAGA	3 cut(s)	412, 656, 853
MfeI	CAATTG	2 cut(s)	114, 770
MhlI	GDGCHC	2 cut(s)	346, 470
MluCI	AATT	5 cut(s)	4, 114, 371, 534, 770
Mly113I	GGCGCC	1 cut(s)	213
MlyI	GAGTC	2 cut(s)	95, 572
MmeI	TCCRAC	1 cut(s)	525
Mph1103I	ATGCAT	1 cut(s)	437
MroNI	GCCGGC	2 cut(s)	209, 215
MseI	TTAA	4 cut(s)	8, 365, 788, 851
MslI	CAYNNNNRTG	1 cut(s)	349
MspA1I	CMGCKG	1 cut(s)	661
MspCI	CTTAAG	1 cut(s)	364
MspI	CCGG	4 cut(s)	210, 216, 641, 806
MunI	CAATTG	2 cut(s)	114, 770
MvnI	CGCG	2 cut(s)	480, 491
NaeI	GCCGGC	2 cut(s)	211, 217
NarI	GGCGCC	1 cut(s)	213
NdeI	CATATG	1 cut(s)	869
NdeII	GATC	2 cut(s)	330, 558
NgoMIV	GCCGGC	2 cut(s)	209, 215
NlaIII	CATG	2 cut(s)	799, 863
NlaIV	GGNNCC	2 cut(s)	214, 526
NmuCI	GTSAC	2 cut(s)	56, 582
NsbI	TGCGCA	1 cut(s)	69
NsiI	ATGCAT	1 cut(s)	437
PagI	TCATGA	1 cut(s)	859
PaqCI	CACCTGC	1 cut(s)	821
PciSI	GCTCTTC	1 cut(s)	639
PcsI	WCGNNNNNNNCGW	2 cut(s)	381, 684
PdiI	GCCGGC	2 cut(s)	211, 217
PfeI	GAWTC	3 cut(s)	83, 224, 863
PflMI	CCANNNNNTGG	1 cut(s)	521
PleI	GAGTC	2 cut(s)	95, 571
PluTI	GGCGCC	1 cut(s)	216
PmaCI	CACGTG	1 cut(s)	465
PmlI	CACGTG	1 cut(s)	465
PpsI	GAGTC	2 cut(s)	95, 571
Ppu21I	YACGTR	1 cut(s)	465
Psp1406I	AACGTT	1 cut(s)	290
PspCI	CACGTG	1 cut(s)	465
PspFI	CCCAGC	1 cut(s)	649
PspN4I	GGNNCC	2 cut(s)	214, 526
PspPI	GGNCC	2 cut(s)	599, 775
PvuII	CAGCTG	1 cut(s)	661
RsaI	GTAC	1 cut(s)	728
RsaNI	GTAC	1 cut(s)	727
RseI	CAYNNNNRTG	1 cut(s)	349
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	4 cut(s)	8, 365, 788, 851
Sau3AI	GATC	2 cut(s)	330, 558
Sau96I	GGNCC	2 cut(s)	599, 775
SchI	GAGTC	2 cut(s)	95, 572
SduI	GDGCHC	2 cut(s)	346, 470
SfaNI	GCATC	1 cut(s)	444
SfcI	CTRYAG	2 cut(s)	44, 625
SfoI	GGCGCC	1 cut(s)	214
SinI	GGWCC	1 cut(s)	599
SmiMI	CAYNNNNRTG	1 cut(s)	349
SmlI	CTYRAG	2 cut(s)	326, 364
SmoI	CTYRAG	2 cut(s)	326, 364
Sse9I	AATT	5 cut(s)	4, 114, 371, 534, 770
SsiI	CCGC	9 cut(s)	275, 312, 460, 478, 539, 575, 593, 602, 803
SspDI	GGCGCC	1 cut(s)	212
SspMI	CTAG	2 cut(s)	131, 816
StyI	CCWWGG	1 cut(s)	443
TaaI	ACNGT	3 cut(s)	109, 236, 731
TaiI	ACGT	5 cut(s)	63, 293, 420, 467, 681
TaqI	TCGA	6 cut(s)	99, 262, 285, 375, 438, 561
TasI	AATT	5 cut(s)	4, 114, 371, 534, 770
TauI	GCSGC	3 cut(s)	278, 314, 480
TfiI	GAWTC	3 cut(s)	83, 224, 863
Tru1I	TTAA	4 cut(s)	8, 365, 788, 851
Tru9I	TTAA	4 cut(s)	8, 365, 788, 851
TscAI	CASTG	5 cut(s)	85, 114, 351, 363, 785
TseFI	GTSAC	2 cut(s)	56, 582
TseI	GCWGC	7 cut(s)	28, 31, 40, 127, 400, 658, 661
Tsp45I	GTSAC	2 cut(s)	56, 582
TspDTI	ATGAA	4 cut(s)	17, 245, 854, 876
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	5 cut(s)	85, 114, 351, 363, 785
Van91I	CCANNNNNTGG	1 cut(s)	521
Vha464I	CTTAAG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	758
XspI	CTAG	2 cut(s)	131, 816
Zsp2I	ATGCAT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.