Prupe.6G195100_v2.0.a1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
20258118 .. 20259623
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G195100.1

Sequence Viewer

Length: 1131 bp
ATGCGAGGACTGATAAAGAGCTTCAGCCTCCTCATGCTCTTGCTTGCCTTCCCTTACGCCATTAATGCGCAGGCCACCCAGGAATTACAGAACAACAACGGCTATGGCTACGTCTCCACTTTCACCTCATCCATGGCCATGATCCTTGTGTTCCTCGTATGCGCCTTCTTCTTGATGGTCTTCTTCATCATCTGCATTCGCCGCTGCGCCGAGGCCGCAGACATCGAATCCGCCGGAAGCGCAGCTCCGGCCACCGTTTCCCGCCGCCGAGGCCTCGACCCTGCCGTGATCGAGACTTTCCCGATCCTCGTCTACTCCGCCGTCAAGGATCTCAAGATCGGGAAGGAAGCTCTGGAGTGCGCGGTGTGCTTGGGCGAGTTCGACGACTACGAAACGCTGCGTTTGCTGCCGAAGTGCGATCACGTCTTCCACCCAGACTGCATCGACGCCTGGTTAGCAGCTCACGTGACGTGTCCGGTTTGCCGCGCCAAGCTCTCGGCCGAGTCGAACTCGCGAGTTCCCGAGCCACACAACGATCCGAATCTGGAAAGTTCGAGTACGACGAGCCAGATTGAAGTCGGTGAGGCTGGGAACAACGCCGTCGTGGTCAATGTGTATGAAAATCAGAGCGAGGACCCACAAGGGGTTGAGACTGCGAACCGTACAAGTACAGCGAGGTCGGGAATCTCTGGAAAGTTCCCGAGATCGCATTCGACGGGGCACTCACTGAGTCAACTCGGAGGGAACACGGAGCGGTACACCTTGAGACTGCCAGAGGAGGTGAGGAGACAGCTGATTTCGCTCGGGATAAATAAGCTGAGACGTTCGAATAGCTACGACGTCGTTTTGCCTCGCCTTGAGAGTTCGAGGAAGGGGTATAGGTGCGGCGGCGGTGAAACGAAAAGCAATGTGGATAATCAAACCGGGTGGTTCGACTCATGTGTTTTGTTAAGAACGCCCTCGTTTTTGGCTAGGGGGAGTTCCGTTACCTTTAAGTCTCCTAAGGGAGGAGGCGGTGACGGAGATGGCGTGTTTGGGAAGACACCGTTAAGGTCTGTTAAAACGCCGTTCGATTGTCTGAATGCGAAGGCGGAGAGGTCCAAAGAATCGATATCTCGGCTTCCTGTTTGA

Protein Analysis

377

Amino Acids

40.95

Weight (kDa)

8.21

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 843
Acc16I TGCGCA 1 cut(s) 69
AccBSI CCGCTC 1 cut(s) 754
AccI GTMKAC 1 cut(s) 312
AccII CGCG 3 cut(s) 362, 486, 514
AclWI GGATC 4 cut(s) 136, 298, 336, 530
AcoI YGGCCR 3 cut(s) 135, 249, 498
AcuI CTGAAG 1 cut(s) 7
AcvI CACGTG 1 cut(s) 466
AcyI GRCGYC 2 cut(s) 447, 840
AfaI GTAC 4 cut(s) 559, 664, 670, 758
AfiI CCNNNNNNNGG 2 cut(s) 643, 1007
AflIII ACRYGT 1 cut(s) 470
AgsI TTSAA 1 cut(s) 575
AjiI CACGTC 2 cut(s) 424, 471
AjnI CCWGG 2 cut(s) 78, 449
AluBI AGCT 8 cut(s) 21, 245, 350, 461, 493, 793, 817, 834
AluI AGCT 8 cut(s) 21, 245, 350, 461, 493, 793, 817, 834
Alw26I GTCTC 7 cut(s) 118, 287, 644, 760, 781, 814, 1002
AlwI GGATC 4 cut(s) 136, 298, 336, 530
Ama87I CYCGRG 3 cut(s) 521, 700, 803
AoxI GGCC 6 cut(s) 72, 135, 213, 249, 271, 498
ApeKI GCWGC 5 cut(s) 204, 242, 397, 406, 458
AseI ATTAAT 1 cut(s) 63
AspLEI GCGC 6 cut(s) 70, 164, 209, 242, 362, 488
AspS9I GGNCC 2 cut(s) 634, 1098
AsuC2I CCSGG 1 cut(s) 925
AsuHPI GGTGA 5 cut(s) 115, 593, 793, 905, 1028
AsuII TTCGAA 1 cut(s) 827
AvaI CYCGRG 3 cut(s) 521, 700, 803
AvaII GGWCC 2 cut(s) 634, 1098
AxyI CCTNAGG 1 cut(s) 1002
BaeGI GKGCMC 1 cut(s) 723
BalI TGGCCA 1 cut(s) 137
BbrPI CACGTG 1 cut(s) 466
BbsI GAAGAC 3 cut(s) 172, 418, 1046
BbvI GCAGC 5 cut(s) 191, 254, 384, 393, 470
BccI CCATC 2 cut(s) 169, 1019
BceAI ACGGC 5 cut(s) 115, 269, 305, 584, 1051
BciT130I CCWGG 2 cut(s) 80, 451
BcnI CCSGG 1 cut(s) 925
BcoDI GTCTC 7 cut(s) 118, 287, 644, 760, 781, 814, 1002
BfaI CTAG 1 cut(s) 972
BglI GCCNNNNNGGC 1 cut(s) 270
Bme1390I CCNGG 3 cut(s) 80, 451, 925
Bme18I GGWCC 2 cut(s) 634, 1098
BmeT110I CYCGRG 3 cut(s) 521, 700, 803
BmgBI CACGTC 2 cut(s) 424, 471
BmgT120I GGNCC 2 cut(s) 634, 1098
BmiI GGNNCC 1 cut(s) 636
BmrFI CCNGG 3 cut(s) 80, 451, 925
BmsI GCATC 1 cut(s) 450
BpiI GAAGAC 3 cut(s) 172, 418, 1046
BplI GAGNNNNNCTC 2 cut(s) 494, 526
BpmI CTGGAG 1 cut(s) 374
Bpu14I TTCGAA 1 cut(s) 827
BpuEI CTTGAG 3 cut(s) 317, 784, 878
BpuMI CCSGG 1 cut(s) 925
Bsa29I ATCGAT 1 cut(s) 1109
BsaAI YACGTR 1 cut(s) 466
BsaBI GATNNNNATC 1 cut(s) 540
BsaHI GRCGYC 2 cut(s) 447, 840
BsaJI CCNNGG 4 cut(s) 78, 132, 210, 268
BsaWI WCCGGW 1 cut(s) 475
BsaXI ACNNNNNCTCC 2 cut(s) 1014, 1044
Bsc4I CCNNNNNNNGG 2 cut(s) 643, 1007
Bse21I CCTNAGG 1 cut(s) 1002
Bse3DI GCAATG 1 cut(s) 913
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 2 cut(s) 80, 451
BseCI ATCGAT 1 cut(s) 1109
BseDI CCNNGG 4 cut(s) 78, 132, 210, 268
BseGI GGATG 1 cut(s) 128
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 2 cut(s) 643, 1007
BseMI GCAATG 1 cut(s) 913
BseMII CTCAG 2 cut(s) 719, 809
BseRI GAGGAG 4 cut(s) 20, 791, 799, 1023
BseSI GKGCMC 1 cut(s) 723
BseX3I CGGCCG 1 cut(s) 498
BseXI GCAGC 5 cut(s) 191, 254, 384, 393, 470
BseYI CCCAGC 1 cut(s) 587
Bsh1236I CGCG 3 cut(s) 362, 486, 514
Bsh1285I CGRYCG 1 cut(s) 501
BshFI GGCC 6 cut(s) 74, 137, 215, 251, 273, 500
BshVI ATCGAT 1 cut(s) 1109
BsiEI CGRYCG 1 cut(s) 501
BsiHKCI CYCGRG 3 cut(s) 521, 700, 803
BsiSI CCGG 4 cut(s) 234, 248, 476, 924
BslI CCNNNNNNNGG 2 cut(s) 643, 1007
BsmAI GTCTC 7 cut(s) 118, 287, 644, 760, 781, 814, 1002
BsmBI CGTCTC 2 cut(s) 118, 814
BsmI GAATGC 3 cut(s) 195, 709, 1087
BsnI GGCC 6 cut(s) 74, 137, 215, 251, 273, 500
BsoBI CYCGRG 3 cut(s) 521, 700, 803
Bsp119I TTCGAA 1 cut(s) 827
Bsp1286I GDGCHC 1 cut(s) 723
Bsp143I GATC 8 cut(s) 141, 288, 303, 328, 336, 418, 535, 704
Bsp19I CCATGG 1 cut(s) 132
Bsp68I TCGCGA 1 cut(s) 514
BspANI GGCC 6 cut(s) 74, 137, 215, 251, 273, 500
BspCNI CTCAG 2 cut(s) 720, 810
BspDI ATCGAT 1 cut(s) 1109
BspFNI CGCG 3 cut(s) 362, 486, 514
BspLI GGNNCC 1 cut(s) 636
BspPI GGATC 4 cut(s) 136, 298, 336, 530
BspT104I TTCGAA 1 cut(s) 827
BsrBI CCGCTC 1 cut(s) 754
BsrDI GCAATG 1 cut(s) 913
BssECI CCNNGG 4 cut(s) 78, 132, 210, 268
BssMI GATC 8 cut(s) 141, 288, 303, 328, 336, 418, 535, 704
BssNI GRCGYC 2 cut(s) 447, 840
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 80, 451
Bst4CI ACNGT 3 cut(s) 256, 662, 1047
BstACI GRCGYC 2 cut(s) 447, 840
BstBAI YACGTR 1 cut(s) 466
BstBI TTCGAA 1 cut(s) 827
BstC8I GCNNGC 2 cut(s) 45, 72
BstDEI CTNAG 3 cut(s) 728, 818, 1002
BstDSI CCRYGG 1 cut(s) 132
BstENI CCTNNNNNAGG 1 cut(s) 1005
BstF5I GGATG 1 cut(s) 128
BstFNI CGCG 3 cut(s) 362, 486, 514
BstHHI GCGC 6 cut(s) 70, 164, 209, 242, 362, 488
BstKTI GATC 8 cut(s) 144, 291, 306, 331, 339, 421, 538, 707
BstMAI GTCTC 7 cut(s) 118, 287, 644, 760, 781, 814, 1002
BstMBI GATC 8 cut(s) 141, 288, 303, 328, 336, 418, 535, 704
BstMCI CGRYCG 1 cut(s) 501
BstNI CCWGG 2 cut(s) 80, 451
BstSCI CCNGG 3 cut(s) 78, 449, 923
BstSLI GKGCMC 1 cut(s) 723
BstUI CGCG 3 cut(s) 362, 486, 514
BstV1I GCAGC 5 cut(s) 191, 254, 384, 393, 470
BstV2I GAAGAC 3 cut(s) 172, 418, 1046
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BstZI CGGCCG 1 cut(s) 498
Bsu15I ATCGAT 1 cut(s) 1109
Bsu36I CCTNAGG 1 cut(s) 1002
BsuRI GGCC 6 cut(s) 74, 137, 215, 251, 273, 500
BsuTUI ATCGAT 1 cut(s) 1109
BtgI CCRYGG 1 cut(s) 132
BtrI CACGTC 2 cut(s) 424, 471
BtsCI GGATG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 725
BtuMI TCGCGA 1 cut(s) 514
Cac8I GCNNGC 2 cut(s) 45, 72
CfoI GCGC 6 cut(s) 70, 164, 209, 242, 362, 488
Cfr13I GGNCC 2 cut(s) 634, 1098
ClaI ATCGAT 1 cut(s) 1109
CseI GACGC 1 cut(s) 455
Csp6I GTAC 4 cut(s) 558, 663, 669, 757
CspCI CAANNNNNGTGG 2 cut(s) 908, 943
CviAII CATG 4 cut(s) 34, 133, 139, 939
CviQI GTAC 4 cut(s) 558, 663, 669, 757
DdeI CTNAG 3 cut(s) 728, 818, 1002
DpnI GATC 8 cut(s) 143, 290, 305, 330, 338, 420, 537, 706
DpnII GATC 8 cut(s) 141, 288, 303, 328, 336, 418, 535, 704
EaeI YGGCCR 3 cut(s) 135, 249, 498
EagI CGGCCG 1 cut(s) 498
EciI GGCGGA 3 cut(s) 220, 307, 1106
EclXI CGGCCG 1 cut(s) 498
Eco130I CCWWGG 1 cut(s) 132
Eco147I AGGCCT 1 cut(s) 273
Eco32I GATATC 1 cut(s) 1113
Eco47I GGWCC 2 cut(s) 634, 1098
Eco52I CGGCCG 1 cut(s) 498
Eco57I CTGAAG 1 cut(s) 7
Eco72I CACGTG 1 cut(s) 466
Eco81I CCTNAGG 1 cut(s) 1002
Eco88I CYCGRG 3 cut(s) 521, 700, 803
EcoNI CCTNNNNNAGG 1 cut(s) 1005
EcoO109I RGGNCCY 1 cut(s) 634
EcoRII CCWGG 2 cut(s) 78, 449
EcoRV GATATC 1 cut(s) 1113
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
Esp3I CGTCTC 2 cut(s) 118, 814
FaeI CATG 4 cut(s) 37, 136, 142, 942
FaiI YATR 8 cut(s) 35, 105, 134, 140, 160, 618, 879, 940
FatI CATG 4 cut(s) 33, 132, 138, 938
FauI CCCGC 1 cut(s) 269
FblI GTMKAC 1 cut(s) 312
FokI GGATG 1 cut(s) 115
FspBI CTAG 1 cut(s) 972
FspI TGCGCA 1 cut(s) 69
GlaI GCGC 6 cut(s) 69, 163, 208, 241, 361, 487
GsaI CCCAGC 1 cut(s) 591
GsuI CTGGAG 1 cut(s) 374
HaeIII GGCC 6 cut(s) 74, 137, 215, 251, 273, 500
HapII CCGG 4 cut(s) 234, 248, 476, 924
HgaI GACGC 1 cut(s) 455
HhaI GCGC 6 cut(s) 70, 164, 209, 242, 362, 488
Hin1I GRCGYC 2 cut(s) 447, 840
Hin1II CATG 4 cut(s) 37, 136, 142, 942
Hin6I GCGC 6 cut(s) 68, 162, 207, 240, 360, 486
HinP1I GCGC 6 cut(s) 68, 162, 207, 240, 360, 486
HincII GTYRAC 1 cut(s) 734
HindII GTYRAC 1 cut(s) 734
HinfI GANTC 7 cut(s) 227, 503, 541, 684, 730, 935, 1106
HpaII CCGG 4 cut(s) 234, 248, 476, 924
HphI GGTGA 5 cut(s) 115, 593, 793, 905, 1028
Hpy166II GTNNAC 3 cut(s) 313, 734, 759
Hpy188I TCNGA 4 cut(s) 540, 627, 740, 1080
Hpy8I GTNNAC 3 cut(s) 313, 734, 759
Hpy99I CGWCG 7 cut(s) 386, 449, 565, 605, 718, 842, 845
HpyAV CCTTC 5 cut(s) 58, 175, 337, 865, 1081
HpyCH4III ACNGT 3 cut(s) 256, 662, 1047
HpyCH4IV ACGT 6 cut(s) 111, 423, 465, 470, 823, 840
HpyCH4V TGCA 2 cut(s) 195, 441
HpyF3I CTNAG 3 cut(s) 728, 818, 1002
HpySE526I ACGT 6 cut(s) 111, 423, 465, 470, 823, 840
Hsp92I GRCGYC 2 cut(s) 447, 840
Hsp92II CATG 4 cut(s) 37, 136, 142, 942
HspAI GCGC 6 cut(s) 68, 162, 207, 240, 360, 486
Kzo9I GATC 8 cut(s) 141, 288, 303, 328, 336, 418, 535, 704
LmnI GCTCC 2 cut(s) 250, 751
Lsp1109I GCAGC 5 cut(s) 191, 254, 384, 393, 470
LweI GCATC 1 cut(s) 450
MaeI CTAG 1 cut(s) 972
MaeII ACGT 6 cut(s) 111, 423, 465, 470, 823, 840
MaeIII GTNAC 3 cut(s) 466, 985, 1016
MalI GATC 8 cut(s) 143, 290, 305, 330, 338, 420, 537, 706
MbiI CCGCTC 1 cut(s) 754
MboI GATC 8 cut(s) 141, 288, 303, 328, 336, 418, 535, 704
MboII GAAGA 5 cut(s) 160, 172, 175, 418, 1051
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 723
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 1 cut(s) 83
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 3 cut(s) 512, 739, 929
Mox20I TGGCCA 1 cut(s) 137
MscI TGGCCA 1 cut(s) 137
MseI TTAA 5 cut(s) 63, 950, 993, 1049, 1059
MslI CAYNNNNRTG 1 cut(s) 137
Msp20I TGGCCA 1 cut(s) 137
MspA1I CMGCKG 2 cut(s) 204, 793
MspI CCGG 4 cut(s) 234, 248, 476, 924
MspR9I CCNGG 3 cut(s) 80, 451, 925
Mva1269I GAATGC 3 cut(s) 195, 709, 1087
MvaI CCWGG 2 cut(s) 80, 451
MvnI CGCG 3 cut(s) 362, 486, 514
NciI CCSGG 1 cut(s) 925
NcoI CCATGG 1 cut(s) 132
NdeII GATC 8 cut(s) 141, 288, 303, 328, 336, 418, 535, 704
NlaIII CATG 4 cut(s) 37, 136, 142, 942
NlaIV GGNNCC 1 cut(s) 636
NmeAIII GCCGAG 5 cut(s) 235, 293, 476, 526, 1096
NmuCI GTSAC 2 cut(s) 466, 1016
NruI TCGCGA 1 cut(s) 514
NsbI TGCGCA 1 cut(s) 69
NspV TTCGAA 1 cut(s) 827
PceI AGGCCT 1 cut(s) 273
PcsI WCGNNNNNNNCGW 5 cut(s) 282, 387, 503, 560, 1026
PctI GAATGC 3 cut(s) 195, 709, 1087
PfeI GAWTC 4 cut(s) 227, 541, 684, 1106
PleI GAGTC 3 cut(s) 511, 738, 929
PmaCI CACGTG 1 cut(s) 466
PmlI CACGTG 1 cut(s) 466
PpsI GAGTC 3 cut(s) 511, 738, 929
Ppu21I YACGTR 1 cut(s) 466
PpuMI RGGWCCY 1 cut(s) 634
PshBI ATTAAT 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 634
Psp6I CCWGG 2 cut(s) 78, 449
PspCI CACGTG 1 cut(s) 466
PspFI CCCAGC 1 cut(s) 587
PspGI CCWGG 2 cut(s) 78, 449
PspN4I GGNNCC 1 cut(s) 636
PspPI GGNCC 2 cut(s) 634, 1098
PspPPI RGGWCCY 1 cut(s) 634
PsuI RGATCY 1 cut(s) 328
PvuII CAGCTG 1 cut(s) 793
RruI TCGCGA 1 cut(s) 514
RsaI GTAC 4 cut(s) 559, 664, 670, 758
RsaNI GTAC 4 cut(s) 558, 663, 669, 757
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 5 cut(s) 63, 950, 993, 1049, 1059
Sau3AI GATC 8 cut(s) 141, 288, 303, 328, 336, 418, 535, 704
Sau96I GGNCC 2 cut(s) 634, 1098
SchI GAGTC 3 cut(s) 512, 739, 929
ScrFI CCNGG 3 cut(s) 80, 451, 925
SduI GDGCHC 1 cut(s) 723
SfaNI GCATC 1 cut(s) 450
SfuI TTCGAA 1 cut(s) 827
SinI GGWCC 2 cut(s) 634, 1098
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 3 cut(s) 332, 763, 857
SmoI CTYRAG 3 cut(s) 332, 763, 857
Sse9I AATT 1 cut(s) 83
SseBI AGGCCT 1 cut(s) 273
SspMI CTAG 1 cut(s) 972
StuI AGGCCT 1 cut(s) 273
StyD4I CCNGG 3 cut(s) 78, 449, 923
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 3 cut(s) 256, 662, 1047
TaiI ACGT 6 cut(s) 114, 426, 468, 473, 826, 843
TasI AATT 1 cut(s) 83
TatI WGTACW 1 cut(s) 668
TauI GCSGC 6 cut(s) 204, 218, 267, 486, 888, 891
TfiI GAWTC 4 cut(s) 227, 541, 684, 1106
Tru1I TTAA 5 cut(s) 63, 950, 993, 1049, 1059
Tru9I TTAA 5 cut(s) 63, 950, 993, 1049, 1059
TscAI CASTG 1 cut(s) 732
TseFI GTSAC 2 cut(s) 466, 1016
TseI GCWGC 5 cut(s) 204, 242, 397, 406, 458
Tsp45I GTSAC 2 cut(s) 466, 1016
TspDTI ATGAA 2 cut(s) 175, 633
TspGWI ACGGA 3 cut(s) 764, 973, 1035
TspRI CASTG 1 cut(s) 732
VpaK11BI GGWCC 2 cut(s) 634, 1098
VspI ATTAAT 1 cut(s) 63
XagI CCTNNNNNAGG 1 cut(s) 1005
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 1 cut(s) 972
ZraI GACGTC 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.