Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006058

Physical Location & Seq

Genomic Coordinates Reverse (-)

58179578 .. 58180447

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG432600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAGTTTAAAGCCCTTCCATCTTCTGCTGCTGCACTTGCTGCTACAGCCACGCAGTCACGTCGTTGCGCAGGAAACCACTGAATCACAGCAGAACCTCAACTCCACAGTGGCAATTGTGATTGTGCTGCTAGTGTGCGCCTTGTGTACCTCGGTTGGCTTGTTCTCCATCTACAACCACCGTTGTGTGGAGGCGCACATAGATATAGCCGGCGCAGGCATCGATTCCTCCCACCGTCCACAGCAACATCATCGAGGTCTGGAGGCGGCTGTCATCGAAAGGTTCCCTATCTTGCACTACGCAGCCGTCAAGCACCTCAAGATCGGCAAGGGAGCATTGGAATGTGCGGTGTGCTTAAGCCAGTTCGAGGACTACGAAACTCTGCGTTTGCTGCCGAAATGCTACCACGTCTTCCACCCCCAATGCATCGACCCTTGGTTGGCTTCTCACCTCACGTGCCCTGTTTGCCGCGCCAACCTCGCGCCCGAGTCCAACAAGCCAGCACCAGAAAATGGTGCCTTTGTAATTGCGGATTTGGATGAGATAGTGATCGAGTCGCAGTCGGCGGGTCAGTCACCTACTCCGCTTGGACAGAACACGGAGAGCTATAGGTTGAGACTGCCGGAAGAGCTGGGGAGGCAGCTGCGTTCAAGTAGCTACGTCGAGGTAGTCTTTCCGAGGCTTGGGAGTTGCAGGAAGGGATACAGGTACGGTAGTGAAGGGAGTAGTAGCCAAGATGAGGATGGTCATCAATTGGACCAGTGGGATTTAACCACCATTTTACCGCCGGTTATAGCTAGTAGTGGTGGTACAGGTGAGATGAAGACGCTGTTAGCGCCTGATGAATCCATATGTCGGCTTCCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

289

Amino Acids

31.8

Weight (kDa)

5.94

Isoelectric Point (pI)

59.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	114 - 157	9.9e-13	Ring finger domain
zf-RING_11	PF17123	114 - 143	7.5e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	114 - 156	2.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	115 - 156	1e-05	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	127 - 157	1.6e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09110 AT4G09120 AT4G09130
fragaria_vesca	FvH4_1g20110
malus_domestica	MD15G1316800.v1.1
prunus_persica	Prupe.6G195100_v2.0.a1
pyrus_communis	pycom01g06440 pycom15g27950
rosa_chinensis	RchiOBHm_Chr2g0112141 RchiOBHm_Chr7g0233001
rosa_laevigata	RLG00000001306 RLG00000017954
rosa_multiflora	Rmu_sc0000360.1_g000026 Rmu_sc0001294.1_g000027 Rmu_ssc0000018.1_g000029
rosa_roxburghii	Rroxscaffold_2G00131730
rosa_rugosa	Rorug02G0178700
rosa_samantha	Rh2AG230700 Rh2BG244000 Rh2CG235300 Rh2DG238600 Rh7AG432600 Rh7BG405400 Rh7CG451900 Rh7DG421400
rosa_wichuraiana	Rw2G017900 Rw7G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	515
AccB7I	CCANNNNNTGG	1 cut(s)	512
AccII	CGCG	2 cut(s)	471, 482
AciI	CCGC	7 cut(s)	266, 347, 469, 530, 566, 584, 785
AcvI	CACGTG	1 cut(s)	456
AfaI	GTAC	3 cut(s)	148, 710, 811
AfiI	CCNNNNNNNGG	7 cut(s)	187, 367, 439, 512, 683, 739, 855
AflII	CTTAAG	1 cut(s)	355
AgsI	TTSAA	1 cut(s)	651
AjiI	CACGTC	2 cut(s)	61, 409
AleI	CACNNNNGTG	1 cut(s)	183
AloI	GAACNNNNNNTCC	2 cut(s)	86, 118
AluBI	AGCT	5 cut(s)	606, 631, 643, 657, 797
AluI	AGCT	5 cut(s)	606, 631, 643, 657, 797
Alw26I	GTCTC	1 cut(s)	610
Ama87I	CYCGRG	1 cut(s)	485
ApeKI	GCWGC	8 cut(s)	28, 31, 40, 127, 302, 391, 640, 643
AspLEI	GCGC	7 cut(s)	70, 140, 196, 215, 473, 484, 838
AspS9I	GGNCC	1 cut(s)	757
AsuHPI	GGTGA	3 cut(s)	440, 567, 827
AvaI	CYCGRG	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	757
BaeGI	GKGCMC	1 cut(s)	461
BaeI	ACNNNNGTAYC	2 cut(s)	700, 733
BanI	GGYRCC	1 cut(s)	515
BbrPI	CACGTG	1 cut(s)	456
BbsI	GAAGAC	2 cut(s)	403, 830
BbvI	GCAGC	8 cut(s)	15, 18, 27, 114, 314, 378, 630, 652
BccI	CCATC	3 cut(s)	27, 176, 737
BceAI	ACGGC	1 cut(s)	290
BcgI	CGANNNNNNTGC	4 cut(s)	43, 77, 233, 267
BciVI	GTATCC	1 cut(s)	695
BcoDI	GTCTC	1 cut(s)	610
BfaI	CTAG	2 cut(s)	131, 798
BfmI	CTRYAG	2 cut(s)	44, 607
BfoI	RGCGCY	1 cut(s)	839
BfrI	CTTAAG	1 cut(s)	355
BfuI	GTATCC	1 cut(s)	695
Bme18I	GGWCC	1 cut(s)	757
BmeT110I	CYCGRG	1 cut(s)	485
BmgBI	CACGTC	2 cut(s)	61, 409
BmgT120I	GGNCC	1 cut(s)	757
BmiI	GGNNCC	2 cut(s)	284, 517
BmsI	GCATC	2 cut(s)	228, 435
BpiI	GAAGAC	2 cut(s)	403, 830
BpmI	CTGGAG	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	302
Bsa29I	ATCGAT	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	456
BsaBI	GATNNNNATC	2 cut(s)	548, 747
BsaJI	CCNNGG	3 cut(s)	150, 434, 677
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	7 cut(s)	187, 367, 439, 512, 683, 739, 855
Bse118I	RCCGGY	2 cut(s)	209, 787
Bse1I	ACTGG	2 cut(s)	361, 760
Bse8I	GATNNNNATC	2 cut(s)	548, 747
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	3 cut(s)	150, 434, 677
BseGI	GGATG	2 cut(s)	544, 748
BseJI	GATNNNNATC	2 cut(s)	548, 747
BseLI	CCNNNNNNNGG	7 cut(s)	187, 367, 439, 512, 683, 739, 855
BseNI	ACTGG	2 cut(s)	361, 760
BseSI	GKGCMC	1 cut(s)	461
BseXI	GCAGC	8 cut(s)	15, 18, 27, 114, 314, 378, 630, 652
BseYI	CCCAGC	1 cut(s)	631
BsgI	GTGCAG	1 cut(s)	17
Bsh1236I	CGCG	2 cut(s)	471, 482
BshNI	GGYRCC	1 cut(s)	515
BshVI	ATCGAT	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	3 cut(s)	210, 623, 788
BslI	CCNNNNNNNGG	7 cut(s)	187, 367, 439, 512, 683, 739, 855
BsmAI	GTCTC	1 cut(s)	610
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	2 cut(s)	321, 549
BspACI	CCGC	7 cut(s)	266, 347, 469, 530, 566, 584, 785
BspDI	ATCGAT	1 cut(s)	222
BspFNI	CGCG	2 cut(s)	471, 482
BspLI	GGNNCC	2 cut(s)	284, 517
BspQI	GCTCTTC	1 cut(s)	621
BspT107I	GGYRCC	1 cut(s)	515
BspTI	CTTAAG	1 cut(s)	355
BsrFI	RCCGGY	2 cut(s)	209, 787
BsrI	ACTGG	2 cut(s)	361, 760
BssAI	RCCGGY	2 cut(s)	209, 787
BssECI	CCNNGG	3 cut(s)	150, 434, 677
BssMI	GATC	2 cut(s)	321, 549
BssT1I	CCWWGG	1 cut(s)	434
Bst4CI	ACNGT	4 cut(s)	109, 182, 236, 713
Bst6I	CTCTTC	1 cut(s)	621
BstAFI	CTTAAG	1 cut(s)	355
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	456
BstC8I	GCNNGC	3 cut(s)	211, 217, 501
BstF5I	GGATG	2 cut(s)	544, 748
BstFNI	CGCG	2 cut(s)	471, 482
BstH2I	RGCGCY	1 cut(s)	839
BstHHI	GCGC	7 cut(s)	70, 140, 196, 215, 473, 484, 838
BstKTI	GATC	2 cut(s)	324, 552
BstMAI	GTCTC	1 cut(s)	610
BstMBI	GATC	2 cut(s)	321, 549
BstMWI	GCNNNNNNNGC	9 cut(s)	37, 40, 46, 391, 465, 479, 628, 637, 835
BstSFI	CTRYAG	2 cut(s)	44, 607
BstSLI	GKGCMC	1 cut(s)	461
BstUI	CGCG	2 cut(s)	471, 482
BstV1I	GCAGC	8 cut(s)	15, 18, 27, 114, 314, 378, 630, 652
BstV2I	GAAGAC	2 cut(s)	403, 830
Bsu15I	ATCGAT	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	695
BsuTUI	ATCGAT	1 cut(s)	222
BtrI	CACGTC	2 cut(s)	61, 409
BtsCI	GGATG	2 cut(s)	544, 748
BtsIMutI	CAGTG	3 cut(s)	78, 114, 767
Cac8I	GCNNGC	3 cut(s)	211, 217, 501
CfoI	GCGC	7 cut(s)	70, 140, 196, 215, 473, 484, 838
Cfr10I	RCCGGY	2 cut(s)	209, 787
Cfr13I	GGNCC	1 cut(s)	757
ClaI	ATCGAT	1 cut(s)	222
CseI	GACGC	1 cut(s)	835
Csp6I	GTAC	3 cut(s)	147, 709, 810
CviQI	GTAC	3 cut(s)	147, 709, 810
DpnI	GATC	2 cut(s)	323, 551
DpnII	GATC	2 cut(s)	321, 549
DraI	TTTAAA	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Eco130I	CCWWGG	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	757
Eco72I	CACGTG	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	485
EcoT14I	CCWWGG	1 cut(s)	434
EcoT22I	ATGCAT	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	434
FaiI	YATR	6 cut(s)	200, 206, 609, 794, 851, 853
FauI	CCCGC	1 cut(s)	559
FauNDI	CATATG	1 cut(s)	851
FokI	GGATG	2 cut(s)	551, 755
FspBI	CTAG	2 cut(s)	131, 798
FspI	TGCGCA	1 cut(s)	69
GlaI	GCGC	7 cut(s)	69, 139, 195, 214, 472, 483, 837
GsaI	CCCAGC	1 cut(s)	635
GsuI	CTGGAG	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	839
HapII	CCGG	3 cut(s)	210, 623, 788
HgaI	GACGC	1 cut(s)	835
HhaI	GCGC	7 cut(s)	70, 140, 196, 215, 473, 484, 838
Hin6I	GCGC	7 cut(s)	68, 138, 194, 213, 471, 482, 836
HinP1I	GCGC	7 cut(s)	68, 138, 194, 213, 471, 482, 836
HinfI	GANTC	5 cut(s)	83, 224, 488, 554, 845
HpaII	CCGG	3 cut(s)	210, 623, 788
HphI	GGTGA	3 cut(s)	440, 567, 827
Hpy166II	GTNNAC	2 cut(s)	147, 239
Hpy188I	TCNGA	1 cut(s)	678
Hpy188III	TCNNGA	2 cut(s)	260, 319
Hpy8I	GTNNAC	2 cut(s)	147, 239
Hpy99I	CGWCG	2 cut(s)	65, 665
HpyAV	CCTTC	3 cut(s)	25, 691, 713
HpyCH4III	ACNGT	4 cut(s)	109, 182, 236, 713
HpyCH4IV	ACGT	4 cut(s)	60, 408, 455, 660
HpyCH4V	TGCA	4 cut(s)	34, 295, 426, 693
HpyF10VI	GCNNNNNNNGC	9 cut(s)	37, 40, 46, 391, 465, 479, 628, 637, 835
HpySE526I	ACGT	4 cut(s)	60, 408, 455, 660
HspAI	GCGC	7 cut(s)	68, 138, 194, 213, 471, 482, 836
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	321, 549
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	1 cut(s)	332
Lsp1109I	GCAGC	8 cut(s)	15, 18, 27, 114, 314, 378, 630, 652
LweI	GCATC	2 cut(s)	228, 435
MaeI	CTAG	2 cut(s)	131, 798
MaeII	ACGT	4 cut(s)	60, 408, 455, 660
MaeIII	GTNAC	2 cut(s)	56, 573
MalI	GATC	2 cut(s)	323, 551
MboI	GATC	2 cut(s)	321, 549
MboII	GAAGA	4 cut(s)	14, 403, 638, 835
MfeI	CAATTG	2 cut(s)	114, 752
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	3 cut(s)	114, 525, 752
MlyI	GAGTC	2 cut(s)	497, 563
MmeI	TCCRAC	1 cut(s)	516
Mph1103I	ATGCAT	1 cut(s)	428
MroNI	GCCGGC	1 cut(s)	209
MseI	TTAA	3 cut(s)	8, 356, 770
MslI	CAYNNNNRTG	2 cut(s)	183, 340
MspA1I	CMGCKG	1 cut(s)	643
MspCI	CTTAAG	1 cut(s)	355
MspI	CCGG	3 cut(s)	210, 623, 788
MunI	CAATTG	2 cut(s)	114, 752
MvnI	CGCG	2 cut(s)	471, 482
MwoI	GCNNNNNNNGC	9 cut(s)	37, 40, 46, 391, 465, 479, 628, 637, 835
NaeI	GCCGGC	1 cut(s)	211
NdeI	CATATG	1 cut(s)	851
NdeII	GATC	2 cut(s)	321, 549
NgoMIV	GCCGGC	1 cut(s)	209
NlaIV	GGNNCC	2 cut(s)	284, 517
NmuCI	GTSAC	2 cut(s)	56, 573
NsbI	TGCGCA	1 cut(s)	69
NsiI	ATGCAT	1 cut(s)	428
OliI	CACNNNNGTG	1 cut(s)	183
PciSI	GCTCTTC	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PdiI	GCCGGC	1 cut(s)	211
PfeI	GAWTC	3 cut(s)	83, 224, 845
PflMI	CCANNNNNTGG	1 cut(s)	512
PleI	GAGTC	2 cut(s)	496, 562
PmaCI	CACGTG	1 cut(s)	456
PmlI	CACGTG	1 cut(s)	456
PpsI	GAGTC	2 cut(s)	496, 562
Ppu21I	YACGTR	1 cut(s)	456
PspCI	CACGTG	1 cut(s)	456
PspFI	CCCAGC	1 cut(s)	631
PspN4I	GGNNCC	2 cut(s)	284, 517
PspPI	GGNCC	1 cut(s)	757
PvuII	CAGCTG	1 cut(s)	643
RsaI	GTAC	3 cut(s)	148, 710, 811
RsaNI	GTAC	3 cut(s)	147, 709, 810
RseI	CAYNNNNRTG	2 cut(s)	183, 340
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	3 cut(s)	8, 356, 770
Sau3AI	GATC	2 cut(s)	321, 549
Sau96I	GGNCC	1 cut(s)	757
SchI	GAGTC	2 cut(s)	497, 563
SduI	GDGCHC	1 cut(s)	461
SfaNI	GCATC	2 cut(s)	228, 435
SfcI	CTRYAG	2 cut(s)	44, 607
SinI	GGWCC	1 cut(s)	757
SmiMI	CAYNNNNRTG	2 cut(s)	183, 340
SmlI	CTYRAG	2 cut(s)	317, 355
SmoI	CTYRAG	2 cut(s)	317, 355
Sse9I	AATT	3 cut(s)	114, 525, 752
SsiI	CCGC	7 cut(s)	266, 347, 469, 530, 566, 584, 785
SspMI	CTAG	2 cut(s)	131, 798
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	4 cut(s)	109, 182, 236, 713
TaiI	ACGT	4 cut(s)	63, 411, 458, 663
TaqI	TCGA	7 cut(s)	222, 253, 276, 366, 429, 552, 663
TasI	AATT	3 cut(s)	114, 525, 752
TauI	GCSGC	2 cut(s)	269, 471
TfiI	GAWTC	3 cut(s)	83, 224, 845
Tru1I	TTAA	3 cut(s)	8, 356, 770
Tru9I	TTAA	3 cut(s)	8, 356, 770
TscAI	CASTG	3 cut(s)	85, 114, 767
TseFI	GTSAC	2 cut(s)	56, 573
TseI	GCWGC	8 cut(s)	28, 31, 40, 127, 302, 391, 640, 643
Tsp45I	GTSAC	2 cut(s)	56, 573
TspDTI	ATGAA	2 cut(s)	836, 858
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	3 cut(s)	85, 114, 767
Van91I	CCANNNNNTGG	1 cut(s)	512
Vha464I	CTTAAG	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	740
XspI	CTAG	2 cut(s)	131, 798
Zsp2I	ATGCAT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.